BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0035.p (162 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BLZ3.1 C3BLZ3_9BACI Putative uncharacterized protein 212 7e-54 C3AMQ5.1 C3AMQ5_BACMY Putative uncharacterized protein 209 9e-53 C2UWC2.1 C2UWC2_BACCE Putative uncharacterized protein 198 1e-49 C2TYI8.1 C2TYI8_BACCE Putative uncharacterized protein 198 1e-49 Q2BD06.1 Q2BD06_9BACI Putative uncharacterized protein 198 1e-49 >C3BLZ3.1 C3BLZ3_9BACI Putative uncharacterized protein Length = 163 Score = 212 bits (540), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 98/157 (62%), Positives = 126/157 (80%), Gaps = 1/157 (0%) Query: 3 LVQAKEVLSNQLLANANDPSWYVTFTASVQGLSEEEAAWKADEDSNSIAELVQHLLYWNQ 62 + AK+VLS+QLLANANDPSWY+ F+ SV+ LSEEEA WK +E+ NSIAE+VQHLLYWN+ Sbjct: 1 MFHAKDVLSDQLLANANDPSWYLPFSDSVENLSEEEAFWKPNENCNSIAEIVQHLLYWNE 60 Query: 63 TWQTRYREASVQAVPSVESNDHTFAVPPDLSFQQLQTRLLAVLLDWQSLLTEAQLAEDIR 122 TWQTRY+++ V AVPS+ N+ +F +P + SF L+ RLL VLL WQ LLTE ++ ++ Sbjct: 61 TWQTRYQKSHVNAVPSIGDNNKSFIIPENKSFSNLKERLLEVLLQWQDLLTEEKVESEVN 120 Query: 123 EFPG-SQWWEIVGNVTTHNAYHIGQIVLIRKLQKSWK 158 FP ++WWEI+GNV+THNAYHIGQI+ IRKLQ SWK Sbjct: 121 GFPAHAKWWEILGNVSTHNAYHIGQIIFIRKLQNSWK 157 >C3AMQ5.1 C3AMQ5_BACMY Putative uncharacterized protein Length = 163 Score = 209 bits (531), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 97/157 (61%), Positives = 125/157 (79%), Gaps = 1/157 (0%) Query: 3 LVQAKEVLSNQLLANANDPSWYVTFTASVQGLSEEEAAWKADEDSNSIAELVQHLLYWNQ 62 + AK+VLS+QLLANANDPSWY+ F+ SV+ LSEEEA WK +E+ NSIAE+VQHLLYWN+ Sbjct: 1 MFHAKDVLSDQLLANANDPSWYLPFSDSVENLSEEEAFWKPNENCNSIAEIVQHLLYWNE 60 Query: 63 TWQTRYREASVQAVPSVESNDHTFAVPPDLSFQQLQTRLLAVLLDWQSLLTEAQLAEDIR 122 TWQTRY+++ V AVPS+ N+ +F +P + SF L+ +LL VLL WQ LLTE ++ + Sbjct: 61 TWQTRYQKSHVNAVPSIGDNNKSFIIPENKSFSDLKEQLLEVLLQWQDLLTEEKVESAVN 120 Query: 123 EFPG-SQWWEIVGNVTTHNAYHIGQIVLIRKLQKSWK 158 FP ++WWEI+GNV+THNAYHIGQI+ IRKLQ SWK Sbjct: 121 GFPAHAKWWEILGNVSTHNAYHIGQIIFIRKLQNSWK 157 >C2UWC2.1 C2UWC2_BACCE Putative uncharacterized protein Length = 159 Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 91/156 (58%), Positives = 126/156 (80%), Gaps = 1/156 (0%) Query: 3 LVQAKEVLSNQLLANANDPSWYVTFTASVQGLSEEEAAWKADEDSNSIAELVQHLLYWNQ 62 +V K+VL++QLLANANDPSWY+ F+ +V+ LSE EA WK +E+SNSIAE+VQHLLYWN Sbjct: 1 MVHVKDVLADQLLANANDPSWYMPFSDAVKDLSEREAFWKPNEESNSIAEIVQHLLYWNS 60 Query: 63 TWQTRYREASVQAVPSVESNDHTFAVPPDLSFQQLQTRLLAVLLDWQSLLTEAQLAEDIR 122 TWQTRY+E++V AVP++ N+ +F + + +F++L+ +LL LL WQ+L+ E ++ D+ Sbjct: 61 TWQTRYKESNVNAVPAIGDNNKSFMLSDNQTFEELRGKLLEKLLQWQNLINEDKVESDVV 120 Query: 123 EFPGS-QWWEIVGNVTTHNAYHIGQIVLIRKLQKSW 157 FP S +WWE++GNVTTHNAYHIGQI+ IRKLQKS+ Sbjct: 121 GFPVSAKWWEVLGNVTTHNAYHIGQIIYIRKLQKSF 156 >C2TYI8.1 C2TYI8_BACCE Putative uncharacterized protein Length = 159 Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 91/156 (58%), Positives = 126/156 (80%), Gaps = 1/156 (0%) Query: 3 LVQAKEVLSNQLLANANDPSWYVTFTASVQGLSEEEAAWKADEDSNSIAELVQHLLYWNQ 62 +V K+VL++QLLANANDPSWY+ F+ +V+ LSE EA WK +E+SNSIAE+VQHLLYWN Sbjct: 1 MVHVKDVLADQLLANANDPSWYMPFSDAVKDLSEREAFWKPNEESNSIAEIVQHLLYWNS 60 Query: 63 TWQTRYREASVQAVPSVESNDHTFAVPPDLSFQQLQTRLLAVLLDWQSLLTEAQLAEDIR 122 TWQTRY+E++V AVP++ N+ +F + + +F++L+ +LL LL WQ+L+ E ++ D+ Sbjct: 61 TWQTRYKESNVNAVPAIGDNNKSFMLSDNQTFEELRGKLLEKLLQWQNLINEDKVESDVV 120 Query: 123 EFPGS-QWWEIVGNVTTHNAYHIGQIVLIRKLQKSW 157 FP S +WWE++GNVTTHNAYHIGQI+ IRKLQKS+ Sbjct: 121 GFPVSAKWWEVLGNVTTHNAYHIGQIIYIRKLQKSF 156 >Q2BD06.1 Q2BD06_9BACI Putative uncharacterized protein Length = 159 Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 91/159 (57%), Positives = 122/159 (76%), Gaps = 1/159 (0%) Query: 3 LVQAKEVLSNQLLANANDPSWYVTFTASVQGLSEEEAAWKADEDSNSIAELVQHLLYWNQ 62 + A +VL++QL ANANDPSWYV F+ SV LSEE+A WK +E+SNSIAE+VQHLLYWN+ Sbjct: 1 MAHAMDVLADQLSANANDPSWYVPFSESVADLSEEDAFWKPNEESNSIAEMVQHLLYWNE 60 Query: 63 TWQTRYREASVQAVPSVESNDHTFAVPPDLSFQQLQTRLLAVLLDWQSLLTEAQLAEDIR 122 TWQ RY++ V AVP + ND +F +P +++F L+ RLL VLL WQ+LL++ +L ++ Sbjct: 61 TWQKRYKKGHVNAVPPIGRNDESFVLPENITFSDLKERLLEVLLQWQNLLSQEKLESEVE 120 Query: 123 EFPGS-QWWEIVGNVTTHNAYHIGQIVLIRKLQKSWKRS 160 FP S +WW I+GN++THNAYHIGQ+V +RKLQ SW S Sbjct: 121 GFPESAEWWAIIGNLSTHNAYHIGQMVYVRKLQGSWMNS 159 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.127 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 946,134,378 Number of extensions: 34082153 Number of successful extensions: 112119 Number of sequences better than 1.0e-05: 182 Number of HSP's gapped: 111925 Number of HSP's successfully gapped: 182 Length of query: 162 Length of database: 3,060,696,203 Length adjustment: 122 Effective length of query: 40 Effective length of database: 1,911,332,373 Effective search space: 76453294920 Effective search space used: 76453294920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)