BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0033.p (276 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q02HP9.1 Q02HP9_PSEAB Putative transcriptional regulator 103 1e-20 C0Z8E4.1 C0Z8E4_BREBN Probable transcriptional regulator 103 2e-20 C0C0R7.1 C0C0R7_9CLOT Putative uncharacterized protein 102 5e-20 B0NGA4.1 B0NGA4_EUBSP Putative uncharacterized protein 100 1e-19 Q0SVI3.1 Q0SVI3_CLOPS DNA-binding response regulator, AraC family 98 1e-18 >Q02HP9.1 Q02HP9_PSEAB Putative transcriptional regulator Length = 303 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/243 (30%), Positives = 118/243 (48%), Gaps = 12/243 (4%) Query: 30 RALDHHELILVSAGKGSITIERKKYPFKAGMLFYLTPGLPHTIEMDRQEPGRFQSVHFSY 89 RA D H LI AG+G + ++ G L L GL H D Q P VHF Sbjct: 67 RAPDDHLLIYCRAGRGWLECADERVEVGGGDLLVLPKGLEHAYGADPQRPWSIYWVHFE- 125 Query: 90 GYVGLREGEWFVRPEAENLPLQAAQQLKDYYQVEEQFHKLVDC--WDAKLPGYEYVSKTA 147 GL E F+RP L+ Q + + +F L+ LP + + + Sbjct: 126 ---GL-LAEDFLRPLGSAPRLRLGMQPR----LLAEFDALLALRRQGLSLPHFIHAAHL- 176 Query: 148 FQQLLIAIYHNTKKQNQNYATSLKVEKLIQYMRENIHRKLTLTELSGQAQLSPTYLSRAF 207 Q LL ++ + + L ++ + MR ++H L L EL+ Q +LS + ++ + Sbjct: 177 LQGLLTSLAVRPARASLKSGRVLDIDAVQALMRAHLHDSLNLDELAAQFKLSRFHFAKTY 236 Query: 208 KEITGTTIIEFFNQLKMDAAKEMLLEGDLRIKEVAGALGFADEFYFSRIFKKTEGISPSQ 267 + +TG I+ F Q+KM A +L EG L ++++A LG+AD +YFSR+F+K G++PS Sbjct: 237 RALTGQAPIQDFIQMKMAHACRLLDEGALEVRQIAEQLGYADPYYFSRLFRKVVGMAPSH 296 Query: 268 FHS 270 + + Sbjct: 297 YRA 299 >C0Z8E4.1 C0Z8E4_BREBN Probable transcriptional regulator Length = 548 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/241 (29%), Positives = 118/241 (48%), Gaps = 8/241 (3%) Query: 35 HELILVSAGKGSITIERKKYPFKAGMLFYLTPGLPHTIEMDRQEPGRFQSVHFSYGYVGL 94 H +++V+ G G + E + G L+ I D +P RF +F L Sbjct: 37 HAVLIVTKGSGRMLSESDQAALLDGSALVLSRESARQISADTDDPLRFLVFYFD----AL 92 Query: 95 REGEWFVRPEAENLPLQAAQQLKDYYQVEEQFHKLVDCW---DAKLPGYEYVSKTAFQQL 151 ++ + + +L ++QV+ + + A P + ++ FQQL Sbjct: 93 QQQDQVSNDYSPSLSWHLDHSSCVFHQVDNSTELALTLYAHRQANDPLEAFQNQIRFQQL 152 Query: 152 LIAIYHNTKKQNQNYATSLKVEKLIQYMRENIHRKLTLTELSGQAQLSPTYLSRAFKEIT 211 L I+ + ++Q TS V++ I YM N +TL +L+ +A L+P Y + FK+ Sbjct: 153 LHLIWSHAERQ-ATVETSSVVDQTISYMHTNYAEPITLDDLANRAGLTPRYYTEVFKKKV 211 Query: 212 GTTIIEFFNQLKMDAAKEMLLEGDLRIKEVAGALGFADEFYFSRIFKKTEGISPSQFHSK 271 G + IE+ +M+ AK +L E + R++EVA +G+ADEFYFSR FK+ G+SP+ F Sbjct: 212 GKSPIEYLTSCRMEHAKTLLRESNKRLREVARLVGYADEFYFSRRFKQQVGVSPTVFVRM 271 Query: 272 N 272 N Sbjct: 272 N 272 >C0C0R7.1 C0C0R7_9CLOT Putative uncharacterized protein Length = 322 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 120/236 (50%), Gaps = 8/236 (3%) Query: 37 LILVSAGKGSITIERKKYPFKAGMLFYLTPGLPHTIEMDRQEPGRFQSVHFSYGYVGLRE 96 LI + GKG I +E + Y F + G H D ++P HF G V L Sbjct: 90 LIYCTEGKGCIEVEDRTYHIGRSDAFCIPKGRRHKYYADPEDPWSILWAHFK-GEVTL-- 146 Query: 97 GEWFVRPEAENLPLQAAQQLKDYYQVEEQFHKLVDCWDAKLPGYEYVSKTAFQQLLIAIY 156 + E + + + Q + + ++++ + L + Y+S+ L+++ Sbjct: 147 --CYPLEECRVVHMNSRQSDNRMMVLFKLLFRVLE-RNYTLGNFIYISQVL--SLILSEI 201 Query: 157 HNTKKQNQNYATSLKVEKLIQYMRENIHRKLTLTELSGQAQLSPTYLSRAFKEITGTTII 216 + +K +++ V +I++M EN+ R LTL E+S + +LS +YL+ FK TG + + Sbjct: 202 YFREKTDESTVQDRHVTMVIRFMYENLKRSLTLEEISEEVKLSRSYLNTIFKTQTGRSPV 261 Query: 217 EFFNQLKMDAAKEMLLEGDLRIKEVAGALGFADEFYFSRIFKKTEGISPSQFHSKN 272 EFF LKM A ++L D+ I EV+ LG+ D++YFSRIFKK G+SP + + + Sbjct: 262 EFFIHLKMQEACKLLKATDMYIYEVSSELGYEDQYYFSRIFKKVVGVSPRDYKNGD 317 >B0NGA4.1 B0NGA4_EUBSP Putative uncharacterized protein Length = 295 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 14/235 (5%) Query: 37 LILVSAGKGSITIERKKYPFKAGMLFYLTPGLPHTIEMDRQEPGRFQSVHFSYGYVGLRE 96 LI + GKG+I +E + + + F + H D ++P VHF + Sbjct: 63 LIYCTEGKGTIEVEGEVFEMRKSGAFCIPCKKGHRYYADAKDPWSILWVHF--------K 114 Query: 97 GE---WFVRPEAENLPLQAAQQLKDYYQVEEQFHKLVDCWDAKLPGYEYVSKTAFQQLLI 153 GE +F E +P+ + + +++ + L + Y+S+ L++ Sbjct: 115 GENTAYFPIDEPHVVPMNSRHSDNRMMVLFNLLFRVLR-RNYTLGNFIYISQVL--SLIL 171 Query: 154 AIYHNTKKQNQNYATSLKVEKLIQYMRENIHRKLTLTELSGQAQLSPTYLSRAFKEITGT 213 + + +K +++ V +I++M EN+ R LTL E+S + QLS +YL+ FK TG Sbjct: 172 SEVYYREKVDESSVQDRHVTMVIRFMYENLTRSLTLEEISEEVQLSRSYLNTIFKNQTGR 231 Query: 214 TIIEFFNQLKMDAAKEMLLEGDLRIKEVAGALGFADEFYFSRIFKKTEGISPSQF 268 + +EFF LKM A ++L +L I EV+ LG+ D++YFSRIFKK G+SP + Sbjct: 232 SPVEFFIHLKMQEACKLLKNTNLYIYEVSSRLGYEDQYYFSRIFKKVVGVSPKDY 286 >Q0SVI3.1 Q0SVI3_CLOPS DNA-binding response regulator, AraC family Length = 529 Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/99 (43%), Positives = 70/99 (70%) Query: 172 VEKLIQYMRENIHRKLTLTELSGQAQLSPTYLSRAFKEITGTTIIEFFNQLKMDAAKEML 231 V ++I+++ +NI +++TL ++ L+ +YLSR FK TG ++ F N++KM AKE+L Sbjct: 423 VNEIIKFIEKNIDKRITLVMVANAVNLNESYLSRIFKSETGKNLMYFINEVKMKKAKELL 482 Query: 232 LEGDLRIKEVAGALGFADEFYFSRIFKKTEGISPSQFHS 270 + D +KEVA ++G D+FYF+R+FKK G+SPS+F S Sbjct: 483 KQQDTLVKEVANSIGMTDQFYFNRVFKKFYGVSPSKFKS 521 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,604,293,354 Number of extensions: 64451039 Number of successful extensions: 168757 Number of sequences better than 1.0e-05: 5273 Number of HSP's gapped: 168668 Number of HSP's successfully gapped: 5273 Length of query: 276 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 142 Effective length of database: 1,798,280,193 Effective search space: 255355787406 Effective search space used: 255355787406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)