BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0029.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DA69.1 B1DA69_9BACL Short-chain dehydrogenase/reductase SDR 336 1e-90 Q6N3R2.1 Q6N3R2_RHOPA Putative glucose dehydrogenase EC=1.1.1.100 293 1e-77 B3QGH1.1 B3QGH1_RHOPT Short-chain dehydrogenase/reductase SDR 293 1e-77 Q89K11.1 Q89K11_BRAJA Oxidoreductase 288 4e-76 B9JEC6.1 B9JEC6_AGRRK Oxidoreductase protein 274 6e-72 >B1DA69.1 B1DA69_9BACL Short-chain dehydrogenase/reductase SDR Length = 257 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 172/256 (67%), Positives = 204/256 (79%), Gaps = 2/256 (0%) Query: 1 MGKLEGKVAFITGGNSGIGLATAKLFVNEGAKVVITGRNQDTLNAAVEELGAASALGVQA 60 M +L GKVA ITGGNSGIGLATAK FV EGAKVVITGRNQ++L AAV ELGA +A+ VQA Sbjct: 1 MARLNGKVALITGGNSGIGLATAKRFVQEGAKVVITGRNQESLTAAVNELGAENAVAVQA 60 Query: 61 DTTDPASLEQAVAAAVERFGTLDVVFANAGISGYTPVGGTELSLFEKVLRTNVTGVFFTV 120 + DPA E+AVAAA+ERFG LD+VFANAGISG TP+G T+L FE++L+ NVTGVFFTV Sbjct: 61 EAADPAGSEKAVAAAIERFGKLDIVFANAGISGGTPLGDTKLEDFEQILKVNVTGVFFTV 120 Query: 121 QAAVPHLKEGASVILNSSVLAEAGSPGTSAYAASKGAVSSMARVLVSELAPRGIRVNTIS 180 QAAVPHL+ GAS+IL SVLA G +AYAASKGAV+SMARV SEL+PRGIRVNT+ Sbjct: 121 QAAVPHLQAGASIILVGSVLATTGGATRAAYAASKGAVTSMARVFASELSPRGIRVNTVV 180 Query: 181 PGATRTPIWG--NAEGLAAKEAVLTRSVPLKRLGEPEEIAQVAVFLASDAASYVNGADIG 238 PGAT+TPIW E +A EA L+RS+PL RLGEP+EIA +FLASD +S+V A + Sbjct: 181 PGATKTPIWKATEPEQIAKLEAGLSRSIPLNRLGEPDEIANAVLFLASDESSFVQAAQLQ 240 Query: 239 VDGGSGSSPFGAPIYK 254 VDGG+ +P GAPIY+ Sbjct: 241 VDGGADGAPLGAPIYR 256 >Q6N3R2.1 Q6N3R2_RHOPA Putative glucose dehydrogenase EC=1.1.1.100 Length = 257 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 149/256 (58%), Positives = 191/256 (74%), Gaps = 5/256 (1%) Query: 3 KLEGKVAFITGGNSGIGLATAKLFVNEGAKVVITGRNQDTLNAAVEELGAASALGVQADT 62 +L GK A ITGGNSGIGLATAKLFV EGA+V ITGR++ L+AA ELGA AL V+AD Sbjct: 2 RLSGKTALITGGNSGIGLATAKLFVTEGARVTITGRDRARLDAAARELGA-QALAVEADV 60 Query: 63 TDPASLEQAVAAAVERFGTLDVVFANAGISGYTPVGGTELSLFEKVLRTNVTGVFFTVQA 122 TD A++E AVA A ERFG LD+VFANAGI G TP+GGT L+ FE+V+RTN+T VFFTVQA Sbjct: 61 TDVAAIENAVARAAERFGKLDIVFANAGIPGATPLGGTSLAAFEQVIRTNLTAVFFTVQA 120 Query: 123 AVPHLKEGASVILNSSVLAEAGSPGTSAYAASKGAVSSMARVLVSELAPRGIRVNTISPG 182 A+P+L +GAS+ILN SV++ G+PG +AYAASK + MARV+ SEL+PR IRVN ++PG Sbjct: 121 ALPYLNDGASIILNGSVISVLGNPGFAAYAASKAGLRGMARVMASELSPRNIRVNVVAPG 180 Query: 183 ATRTPIWGNA----EGLAAKEAVLTRSVPLKRLGEPEEIAQVAVFLASDAASYVNGADIG 238 RTPIW + + +A E + + PL R+ EPE IA+ +FLASD A+++ A+I Sbjct: 181 GARTPIWKDTAPTDQAMAVLEKRIAAATPLGRIAEPEHIAKTVLFLASDDAAHIQSAEIF 240 Query: 239 VDGGSGSSPFGAPIYK 254 VDGG+ SP G P ++ Sbjct: 241 VDGGATGSPAGVPAFR 256 >B3QGH1.1 B3QGH1_RHOPT Short-chain dehydrogenase/reductase SDR Length = 257 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 149/256 (58%), Positives = 191/256 (74%), Gaps = 5/256 (1%) Query: 3 KLEGKVAFITGGNSGIGLATAKLFVNEGAKVVITGRNQDTLNAAVEELGAASALGVQADT 62 +L GK A ITGGNSGIGLATAKLFV EGA+V ITGR++ L+AA ELGA AL V+AD Sbjct: 2 RLSGKTALITGGNSGIGLATAKLFVTEGARVTITGRDRARLDAAARELGA-QALAVEADV 60 Query: 63 TDPASLEQAVAAAVERFGTLDVVFANAGISGYTPVGGTELSLFEKVLRTNVTGVFFTVQA 122 TD A++E AVA A ERFG LD+VFANAGI G TP+GGT L+ FE+V+RTN+T VFFTVQA Sbjct: 61 TDIAAIENAVARAAERFGKLDIVFANAGIPGATPLGGTSLAAFEQVIRTNLTAVFFTVQA 120 Query: 123 AVPHLKEGASVILNSSVLAEAGSPGTSAYAASKGAVSSMARVLVSELAPRGIRVNTISPG 182 A+P+L +GAS+ILN SV++ G+PG +AYAASK + MARV+ SEL+PR IRVN ++PG Sbjct: 121 ALPYLNDGASIILNGSVISVLGNPGFAAYAASKAGLRGMARVMASELSPRNIRVNVVAPG 180 Query: 183 ATRTPIWGNA----EGLAAKEAVLTRSVPLKRLGEPEEIAQVAVFLASDAASYVNGADIG 238 RTPIW + + +A E + + PL R+ EPE IA+ +FLASD A+++ A+I Sbjct: 181 GARTPIWKDTAPTDQAMAVLEKRIAAATPLGRIAEPEHIAKTVLFLASDDAAHIQSAEIF 240 Query: 239 VDGGSGSSPFGAPIYK 254 VDGG+ SP G P ++ Sbjct: 241 VDGGATGSPAGVPAFR 256 >Q89K11.1 Q89K11_BRAJA Oxidoreductase Length = 281 Score = 288 bits (736), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 148/256 (57%), Positives = 190/256 (74%), Gaps = 5/256 (1%) Query: 3 KLEGKVAFITGGNSGIGLATAKLFVNEGAKVVITGRNQDTLNAAVEELGAASALGVQADT 62 +L+ K A ITGGN GIGLATAKLFV EGAKVVITGRN++TL AA +ELG +AL V AD Sbjct: 26 RLKNKTALITGGNGGIGLATAKLFVAEGAKVVITGRNKETLAAAAKELGP-NALAVVADA 84 Query: 63 TDPASLEQAVAAAVERFGTLDVVFANAGISGYTPVGGTELSLFEKVLRTNVTGVFFTVQA 122 TD A+ E A+ E+FG D+VFANAGI G TP+G L +FEKV+ TN+TGVFFTVQ+ Sbjct: 85 TDIAATEAAIRQGAEKFGKFDIVFANAGIPGSTPLGAATLEVFEKVISTNLTGVFFTVQS 144 Query: 123 AVPHLKEGASVILNSSVLAEAGSPGTSAYAASKGAVSSMARVLVSELAPRGIRVNTISPG 182 A+PHL + AS+ILN SV++ G PG SAY A+K V +MAR++ SEL+PRGIRVN ++PG Sbjct: 145 ALPHLNDNASIILNGSVISVLGIPGYSAYGAAKAGVRAMARIMASELSPRGIRVNVVAPG 204 Query: 183 ATRTPIWGNA----EGLAAKEAVLTRSVPLKRLGEPEEIAQVAVFLASDAASYVNGADIG 238 A RTPIWG A E A E + S PL R+GEP+ I++ +FLASD ++++ G +I Sbjct: 205 AIRTPIWGAAIATPEAEKAFEKRIALSTPLGRIGEPDHISKTVLFLASDDSAHIQGQEIF 264 Query: 239 VDGGSGSSPFGAPIYK 254 VDGG+ ++P GAPIY+ Sbjct: 265 VDGGAVAAPSGAPIYR 280 >B9JEC6.1 B9JEC6_AGRRK Oxidoreductase protein Length = 258 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 150/257 (58%), Positives = 185/257 (71%), Gaps = 7/257 (2%) Query: 3 KLEGKVAFITGGNSGIGLATAKLFVNEGAKVVITGRNQDTLNAAVEELGAASALGVQADT 62 +L+ KVA ITGGNSGIGLATA++F+ EGAKV ITGRN TL AAVEELG L +Q D Sbjct: 2 RLKNKVAIITGGNSGIGLATARVFLAEGAKVAITGRNPQTLAAAVEELGG-DVLALQVDV 60 Query: 63 TDPASLEQAVAAAVERFGTLDVVFANAGISGYTPVGGTELSLFEKVLRTNVTGVFFTVQA 122 TD A+ E+A A E+ G +D++FANAGI+G T VG T L FE V+RTN T VFFTVQA Sbjct: 61 TDVAATEKAFAEVAEKLGNIDILFANAGIAGETAVGKTMLEQFETVVRTNFTAVFFTVQA 120 Query: 123 AVPHLKEGASVILNSSVLAEAGSPGTSAYAASKGAVSSMARVLVSELAPRGIRVNTISPG 182 A+PHL +GASVILN SV A G PG SAYA +KGAV +M R L SELAPRGIRVN ++PG Sbjct: 121 ALPHLNDGASVILNGSVHAVLGIPGYSAYAGTKGAVRAMTRNLASELAPRGIRVNQVTPG 180 Query: 183 ATRTPIWGNAEGLA--AKEAVLTRS---VPLKRLGEPEEIAQVAVFLASDAASYVNGADI 237 AT+TPIW N + AK+A+ R PL R+ E EEIA+ A++ ASD +S V +I Sbjct: 181 ATKTPIW-NTRAMTEDAKDALEARFGSLSPLGRMSEAEEIAKAALYFASDDSSNVTAIEI 239 Query: 238 GVDGGSGSSPFGAPIYK 254 VDGG+ S+P GA +++ Sbjct: 240 TVDGGATSAPSGAKLFR 256 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.130 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,414,338,485 Number of extensions: 55144865 Number of successful extensions: 319884 Number of sequences better than 1.0e-05: 34515 Number of HSP's gapped: 251515 Number of HSP's successfully gapped: 34617 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 129 (54.3 bits)