BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0021.p (232 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8A7.1 B3K8A7_9BACI Response regulator receiver 395 e-108 Q9K621.1 BCER_BACHD Sensory transduction protein bceR 354 3e-96 C3IYF9.1 C3IYF9_9BACI Two component transcriptional regulator, w... 345 2e-93 B7Y841.1 B7Y841_9BACI Two component transcriptional regulator, w... 345 2e-93 Q5KXG1.1 Q5KXG1_GEOKA Two-component response regulator 343 8e-93 >B3K8A7.1 B3K8A7_9BACI Response regulator receiver Length = 233 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 183/229 (79%), Positives = 209/229 (91%) Query: 1 VAVLFKIMLIEDDVTLFGEIKERLSQWSYEVYGISDFGKVLQEFTAAKPELVIVDIQLPQ 60 V +LFKIMLIEDD TLF E++ERLSQWSY+VYG+ DF VLQEFTA +P+LVI+DIQLP+ Sbjct: 2 VNLLFKIMLIEDDATLFHEVQERLSQWSYDVYGVHDFSAVLQEFTAIQPDLVIIDIQLPK 61 Query: 61 FDGFHWCRILRAHSNVPIIVLSSRDHPSDMVMSMQFGADDFIQKPFHFEVLIAKIQATLR 120 FDGFHWCR++R+HSNVPII LSSRDHP+DMVMSMQ GADDFIQKPFHF+VLIAKIQATLR Sbjct: 62 FDGFHWCRMIRSHSNVPIIFLSSRDHPTDMVMSMQLGADDFIQKPFHFDVLIAKIQATLR 121 Query: 121 RVYNYSTERTELKTWRGATIEYVKNTITLEHESALLTKNEMLILKILVESKDRIVEREEL 180 RVYNY+TERTEL+TWRGAT+E+ KNTI+ +A LTKNEM ILKIL+E K++IV RE+L Sbjct: 122 RVYNYNTERTELRTWRGATVEFGKNTISSPQGTAELTKNEMFILKILMERKNQIVSREDL 181 Query: 181 IRKLWDNEHFVSDNTLTVNVNRLRKKLEPLGLDAYIETKVGQGYMATEE 229 I+ LWDNEHFVSDNTLTVNVNRLRKKLEPLGLD YIETKVGQGY+ATEE Sbjct: 182 IKSLWDNEHFVSDNTLTVNVNRLRKKLEPLGLDPYIETKVGQGYIATEE 230 >Q9K621.1 BCER_BACHD Sensory transduction protein bceR Length = 231 Score = 354 bits (909), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 163/227 (71%), Positives = 199/227 (87%) Query: 4 LFKIMLIEDDVTLFGEIKERLSQWSYEVYGISDFGKVLQEFTAAKPELVIVDIQLPQFDG 63 +FKIMLIEDD TLF EIKERLSQWSY+V+G+S+F KV++EFT+ KP+LVI+DIQLP+FDG Sbjct: 1 MFKIMLIEDDHTLFSEIKERLSQWSYDVFGVSNFEKVIEEFTSLKPDLVIIDIQLPKFDG 60 Query: 64 FHWCRILRAHSNVPIIVLSSRDHPSDMVMSMQFGADDFIQKPFHFEVLIAKIQATLRRVY 123 FHWCR++R HSNVPII LSSRDHP+DMVMSMQ GADDFIQKPFHF+VL+AKIQA LRRV+ Sbjct: 61 FHWCRMIRQHSNVPIIFLSSRDHPTDMVMSMQLGADDFIQKPFHFDVLVAKIQAILRRVH 120 Query: 124 NYSTERTELKTWRGATIEYVKNTITLEHESALLTKNEMLILKILVESKDRIVEREELIRK 183 NY++E+T+LKTW GATI+Y NT++ S L+KNE ILK L+E K++IV R++LIR Sbjct: 121 NYTSEQTQLKTWCGATIDYESNTVSNHVGSIELSKNEFFILKRLIERKNKIVTRDDLIRS 180 Query: 184 LWDNEHFVSDNTLTVNVNRLRKKLEPLGLDAYIETKVGQGYMATEEA 230 LW++E F+SDNTLTVNVNRLRK+L+ LGL AYIETKVGQGYMA E+ Sbjct: 181 LWEDERFISDNTLTVNVNRLRKRLDELGLGAYIETKVGQGYMAKEDG 227 >C3IYF9.1 C3IYF9_9BACI Two component transcriptional regulator, winged helix family Length = 228 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 161/226 (71%), Positives = 192/226 (84%) Query: 5 FKIMLIEDDVTLFGEIKERLSQWSYEVYGISDFGKVLQEFTAAKPELVIVDIQLPQFDGF 64 I+LIEDDVTLF EIK RL QWSY+V GI DFG V++EF+A KP LVI+DIQLP+FDGF Sbjct: 1 MNILLIEDDVTLFQEIKARLEQWSYDVCGIRDFGCVMEEFSACKPHLVIIDIQLPKFDGF 60 Query: 65 HWCRILRAHSNVPIIVLSSRDHPSDMVMSMQFGADDFIQKPFHFEVLIAKIQATLRRVYN 124 HWCR +RAHSNVPI+ LSSRDHP+DMVMSMQ GADD+IQKPFHF+VLIAKIQA LRRVYN Sbjct: 61 HWCRQIRAHSNVPILFLSSRDHPTDMVMSMQLGADDYIQKPFHFDVLIAKIQALLRRVYN 120 Query: 125 YSTERTELKTWRGATIEYVKNTITLEHESALLTKNEMLILKILVESKDRIVEREELIRKL 184 Y+ +L+TW GAT++Y K+T++ EH + LTKNE+LILK L+ K++IV R ELI++L Sbjct: 121 YNAGPVQLQTWCGATVDYEKSTVSNEHGTVELTKNELLILKHLLAKKNQIVARTELIKRL 180 Query: 185 WDNEHFVSDNTLTVNVNRLRKKLEPLGLDAYIETKVGQGYMATEEA 230 W++E FVSDNTLTVNVNRLRKKL+ LGL +IETKVGQGYMATEE Sbjct: 181 WEDERFVSDNTLTVNVNRLRKKLDELGLGRFIETKVGQGYMATEEG 226 >B7Y841.1 B7Y841_9BACI Two component transcriptional regulator, winged helix family Length = 228 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 161/226 (71%), Positives = 192/226 (84%) Query: 5 FKIMLIEDDVTLFGEIKERLSQWSYEVYGISDFGKVLQEFTAAKPELVIVDIQLPQFDGF 64 I+LIEDDVTLF EIK RL QWSY+V GI DFG V++EF+A KP LVI+DIQLP+FDGF Sbjct: 1 MNILLIEDDVTLFQEIKARLEQWSYDVCGIRDFGCVMEEFSACKPHLVIIDIQLPKFDGF 60 Query: 65 HWCRILRAHSNVPIIVLSSRDHPSDMVMSMQFGADDFIQKPFHFEVLIAKIQATLRRVYN 124 HWCR +RAHSNVPI+ LSSRDHP+DMVMSMQ GADD+IQKPFHF+VLIAKIQA LRRVYN Sbjct: 61 HWCRQIRAHSNVPILFLSSRDHPTDMVMSMQLGADDYIQKPFHFDVLIAKIQALLRRVYN 120 Query: 125 YSTERTELKTWRGATIEYVKNTITLEHESALLTKNEMLILKILVESKDRIVEREELIRKL 184 Y+ +L+TW GAT++Y K+T++ EH + LTKNE+LILK L+ K++IV R ELI++L Sbjct: 121 YNAGPVQLQTWCGATVDYEKSTVSNEHGTVELTKNELLILKHLLAKKNQIVARTELIKRL 180 Query: 185 WDNEHFVSDNTLTVNVNRLRKKLEPLGLDAYIETKVGQGYMATEEA 230 W++E FVSDNTLTVNVNRLRKKL+ LGL +IETKVGQGYMATEE Sbjct: 181 WEDERFVSDNTLTVNVNRLRKKLDELGLGRFIETKVGQGYMATEEG 226 >Q5KXG1.1 Q5KXG1_GEOKA Two-component response regulator Length = 228 Score = 343 bits (880), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 160/226 (70%), Positives = 192/226 (84%) Query: 5 FKIMLIEDDVTLFGEIKERLSQWSYEVYGISDFGKVLQEFTAAKPELVIVDIQLPQFDGF 64 I+LIEDDVTLF EIK RL QWSY+V GI DF +V++EF+A KP LVI+DIQLP+FDGF Sbjct: 1 MNILLIEDDVTLFQEIKARLEQWSYDVCGIRDFDRVMEEFSACKPHLVIIDIQLPKFDGF 60 Query: 65 HWCRILRAHSNVPIIVLSSRDHPSDMVMSMQFGADDFIQKPFHFEVLIAKIQATLRRVYN 124 HWCR +RAHSNVPI+ LSSRDHP+DMVMSMQ GADD+IQKPFHF+VLIAKIQA LRRVYN Sbjct: 61 HWCRQIRAHSNVPILFLSSRDHPTDMVMSMQLGADDYIQKPFHFDVLIAKIQALLRRVYN 120 Query: 125 YSTERTELKTWRGATIEYVKNTITLEHESALLTKNEMLILKILVESKDRIVEREELIRKL 184 Y+ +L+TW GAT++Y K+T++ EH + LTKNE+LILK L+ K++IV R ELI++L Sbjct: 121 YNAGPIQLQTWCGATVDYEKSTVSNEHGTVELTKNELLILKHLLAKKNQIVARTELIKRL 180 Query: 185 WDNEHFVSDNTLTVNVNRLRKKLEPLGLDAYIETKVGQGYMATEEA 230 W++E FVSDNTLTVNVNRLRKKL+ LGL +IETKVGQGYMATEE Sbjct: 181 WEDERFVSDNTLTVNVNRLRKKLDELGLGRFIETKVGQGYMATEEG 226 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,292,750,708 Number of extensions: 49930338 Number of successful extensions: 234047 Number of sequences better than 1.0e-05: 20172 Number of HSP's gapped: 220477 Number of HSP's successfully gapped: 20211 Length of query: 232 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 101 Effective length of database: 1,826,543,238 Effective search space: 184480867038 Effective search space used: 184480867038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)