BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0020.p (334 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8A8.1 B3K8A8_9BACI Sensor protein EC=2.7.13.3 421 e-116 Q9K620.1 BCES_BACHD Sensor protein bceS EC=2.7.13.3 394 e-108 Q65D39.1 Q65D39_BACLD Sensor protein EC=2.7.13.3 385 e-105 C3IYF8.1 C3IYF8_9BACI Integral membrane sensor signal transducti... 382 e-104 B7Y842.1 B7Y842_9BACI Sensor protein EC=2.7.13.3 382 e-104 >B3K8A8.1 B3K8A8_9BACI Sensor protein EC=2.7.13.3 Length = 334 Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust. Identities = 200/334 (59%), Positives = 249/334 (74%) Query: 1 MIRKYIKEKLSWXXXXXXXXXXXXXVAYVDSSIPFLSVLYIVVLNIMVCTTFVFLRYHKE 60 MI YI+E+LSW +A VD+ IPFL +LYIV L+ + F+F+RY++E Sbjct: 1 MIMAYIRERLSWILLFVFLQLMLLFIAAVDAQIPFLPILYIVFLSTLFFLVFLFVRYNRE 60 Query: 61 TRFYQRMGAWDEVYDLSTFKEANSPFERMVQEAVNAQTERYRRESSANFQLLEQEKDDLL 120 T+FY+ + AWD+ YDL+ E PFE + + ++ QTER+++ESS ++ EKD+LL Sbjct: 61 TKFYKSLQAWDDTYDLAAISEPERPFEGIAMDMLSLQTERFKKESSMRLMEMQGEKDELL 120 Query: 121 SWIHEVKTPLTAMQLMIERLTDETLKPKLMYEWLRVHHLLDQQLHQKRIPFMRNDLYIEM 180 SWIHEVKTPLT MQLMIER+ DETLK +L YEWLR+H LLDQQLHQKRIPF++NDL IE+ Sbjct: 121 SWIHEVKTPLTTMQLMIERMEDETLKAQLQYEWLRIHLLLDQQLHQKRIPFIQNDLLIEV 180 Query: 181 IRLEPVLNKEIQALKSWCIPKGIGFDVDLAVEAVLTDGKWLGFILRQLLTNAVKYSENSD 240 LEP++ +EI+ LK+WC+ KGIGFDV L VL+D KWLGFI+RQLLTNAVKYS SD Sbjct: 181 SALEPIIFQEIRGLKTWCMQKGIGFDVSLQAAEVLSDAKWLGFIIRQLLTNAVKYSSASD 240 Query: 241 ILIQSREKAGHTVLIIEDHGRGIDPKDLPRIYDKGFTSTTGRQEGAATGMGLYLTKQVAE 300 I I+S A H LII D GRGIDPKD+PRI+DKGFTSTT Q+ AATGMGLYLTK+VAE Sbjct: 241 INIESDLVAKHVRLIIRDAGRGIDPKDMPRIFDKGFTSTTSHQDRAATGMGLYLTKKVAE 300 Query: 301 PLQIGIHADSMLGEGTTFTLTFPRKNDFLRITGM 334 L I I +S G GTTFTL FP++NDF+ ITGM Sbjct: 301 ALMIRIQVESKPGIGTTFTLIFPKRNDFVSITGM 334 >Q9K620.1 BCES_BACHD Sensor protein bceS EC=2.7.13.3 Length = 334 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/334 (56%), Positives = 244/334 (73%) Query: 1 MIRKYIKEKLSWXXXXXXXXXXXXXVAYVDSSIPFLSVLYIVVLNIMVCTTFVFLRYHKE 60 MI+ +IKE+ SW +AY+DS+IP V Y V L+ M+ F+ +RY KE Sbjct: 1 MIKTFIKERGSWILIIIFLQCFTVFIAYLDSAIPLAPVFYSVFLSSMIFLFFLAVRYKKE 60 Query: 61 TRFYQRMGAWDEVYDLSTFKEANSPFERMVQEAVNAQTERYRRESSANFQLLEQEKDDLL 120 T FY+++ WD+ D++ A SPFER++++ + QT + ++ + LEQEKDDLL Sbjct: 61 TTFYRKLEEWDKDLDVTNLAAAESPFERIIEQTIVKQTGYLQEKAHRHETALEQEKDDLL 120 Query: 121 SWIHEVKTPLTAMQLMIERLTDETLKPKLMYEWLRVHHLLDQQLHQKRIPFMRNDLYIEM 180 +WIHE+KTPLTAM L+I+RL D T+K +L YEW+R+H LLDQQLHQKRIPFM NDLY+E Sbjct: 121 AWIHEIKTPLTAMHLIIDRLEDRTIKGQLTYEWMRIHLLLDQQLHQKRIPFMENDLYVEK 180 Query: 181 IRLEPVLNKEIQALKSWCIPKGIGFDVDLAVEAVLTDGKWLGFILRQLLTNAVKYSENSD 240 + LE VL++EI+ L+SWCI KGIGFD+ L V VLTD KWL FILRQLL+NAVKYSE SD Sbjct: 181 VNLESVLHQEIKTLQSWCIQKGIGFDLQLEVTDVLTDAKWLSFILRQLLSNAVKYSEASD 240 Query: 241 ILIQSREKAGHTVLIIEDHGRGIDPKDLPRIYDKGFTSTTGRQEGAATGMGLYLTKQVAE 300 I+I+S +G TV+ + D GRGI+PKDLPRI++KGFTST Q ATGMGLYL K+VAE Sbjct: 241 IIIKSDVVSGKTVVEVTDFGRGIEPKDLPRIFEKGFTSTKTDQTNGATGMGLYLAKRVAE 300 Query: 301 PLQIGIHADSMLGEGTTFTLTFPRKNDFLRITGM 334 PL I + S +GEGTTFTLTFP++N+F+R GM Sbjct: 301 PLLIDLAVSSTVGEGTTFTLTFPKENEFVRTLGM 334 >Q65D39.1 Q65D39_BACLD Sensor protein EC=2.7.13.3 Length = 334 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 175/334 (52%), Positives = 246/334 (73%) Query: 1 MIRKYIKEKLSWXXXXXXXXXXXXXVAYVDSSIPFLSVLYIVVLNIMVCTTFVFLRYHKE 60 M++ ++ E+ SW +AYVD+SIPF S+LY+ L+ + FV +R+ KE Sbjct: 1 MLKAFLTERRSWIAIFVLQQILFLFIAYVDASIPFTSILYMTYLSSFIFIVFVIVRFRKE 60 Query: 61 TRFYQRMGAWDEVYDLSTFKEANSPFERMVQEAVNAQTERYRRESSANFQLLEQEKDDLL 120 T+FY+ + WD D++ +EA +PFE M+++++ QT++ ++E++ + LE EKD+L+ Sbjct: 61 TKFYKSLEEWDHNLDVTNIREAETPFETMIEKSIAEQTKQLKQEAAQHRLALENEKDELM 120 Query: 121 SWIHEVKTPLTAMQLMIERLTDETLKPKLMYEWLRVHHLLDQQLHQKRIPFMRNDLYIEM 180 +WIHEVKTPLTAM L++E + D++LK +L YEWLR+H LLD+QLHQKR+ F+ NDL +E+ Sbjct: 121 AWIHEVKTPLTAMHLIMETIEDQSLKARLAYEWLRIHLLLDRQLHQKRMSFIENDLSLEV 180 Query: 181 IRLEPVLNKEIQALKSWCIPKGIGFDVDLAVEAVLTDGKWLGFILRQLLTNAVKYSENSD 240 + L+P++ KEI+ L+SWCIPKGIGFD+ L VL+D KWL FI+RQLLTNAVKYSE SD Sbjct: 181 LELKPMIFKEIKDLQSWCIPKGIGFDIQLEAGEVLSDAKWLSFIIRQLLTNAVKYSEASD 240 Query: 241 ILIQSREKAGHTVLIIEDHGRGIDPKDLPRIYDKGFTSTTGRQEGAATGMGLYLTKQVAE 300 +LI+S E+ G L ++D GRGIDPKD+PR++DKGFTSTT + AATGMGLYL K+ A+ Sbjct: 241 VLIKSYEQDGKVHLAVQDFGRGIDPKDMPRVFDKGFTSTTEHHDQAATGMGLYLAKKAAK 300 Query: 301 PLQIGIHADSMLGEGTTFTLTFPRKNDFLRITGM 334 PL I I DS G GTTFTL FP +N+F R+ G+ Sbjct: 301 PLLIHIEVDSKPGTGTTFTLIFPMRNEFSRVLGV 334 >C3IYF8.1 C3IYF8_9BACI Integral membrane sensor signal transduction histidine kinase Length = 334 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/334 (54%), Positives = 241/334 (72%) Query: 1 MIRKYIKEKLSWXXXXXXXXXXXXXVAYVDSSIPFLSVLYIVVLNIMVCTTFVFLRYHKE 60 MI+ Y+ E+ SW VAY+D +IP S+LYIV L ++ FV +R+ KE Sbjct: 1 MIKDYLWERKSWMALFLFLELFILFVAYLDPTIPLSSILYIVFLTTIIFVVFVIIRWKKE 60 Query: 61 TRFYQRMGAWDEVYDLSTFKEANSPFERMVQEAVNAQTERYRRESSANFQLLEQEKDDLL 120 T FYQR+ W+ D + A SP E++V+ + +QT+++++E + LEQEKD+LL Sbjct: 61 TAFYQRLQEWERGLDPVSALRAASPLEKIVERVLASQTDQWKQELKEHLATLEQEKDELL 120 Query: 121 SWIHEVKTPLTAMQLMIERLTDETLKPKLMYEWLRVHHLLDQQLHQKRIPFMRNDLYIEM 180 SWIHE+KTPLTAM+L+IER+ DE K +L+YEWLR+H LLDQQLHQ+R+P M NDLYIE Sbjct: 121 SWIHEMKTPLTAMRLIIERVGDENTKAQLLYEWLRIHLLLDQQLHQRRLPHMENDLYIEQ 180 Query: 181 IRLEPVLNKEIQALKSWCIPKGIGFDVDLAVEAVLTDGKWLGFILRQLLTNAVKYSENSD 240 + LEP+L EI+ L+SWC+ KGIGFD+ L V +VL+D KWL FI+RQ++TNAVKYSE+SD Sbjct: 181 VELEPLLINEIKPLQSWCMQKGIGFDLQLDVRSVLSDAKWLSFIIRQIITNAVKYSESSD 240 Query: 241 ILIQSREKAGHTVLIIEDHGRGIDPKDLPRIYDKGFTSTTGRQEGAATGMGLYLTKQVAE 300 I+++S K GH L I+D G GIDPKDLPRI++KGFTSTT Q AATGMGLYL K+ A+ Sbjct: 241 IVVKSFMKNGHVRLQIQDFGLGIDPKDLPRIFEKGFTSTTEHQNEAATGMGLYLAKKAAK 300 Query: 301 PLQIGIHADSMLGEGTTFTLTFPRKNDFLRITGM 334 PL + H +S G GTTFT+ FP++ND +R M Sbjct: 301 PLLLDFHVESTPGRGTTFTIIFPQENDIIRTHRM 334 >B7Y842.1 B7Y842_9BACI Sensor protein EC=2.7.13.3 Length = 334 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/334 (54%), Positives = 241/334 (72%) Query: 1 MIRKYIKEKLSWXXXXXXXXXXXXXVAYVDSSIPFLSVLYIVVLNIMVCTTFVFLRYHKE 60 MI+ Y+ E+ SW VAY+D +IP S+LYIV L ++ FV +R+ KE Sbjct: 1 MIKDYLWERKSWMALFLFLELFILFVAYLDPTIPLSSILYIVFLTTIIFVVFVIIRWKKE 60 Query: 61 TRFYQRMGAWDEVYDLSTFKEANSPFERMVQEAVNAQTERYRRESSANFQLLEQEKDDLL 120 T FYQR+ W+ D + A SP E++V+ + +QT+++++E + LEQEKD+LL Sbjct: 61 TAFYQRLQEWERGLDPVSALRAASPLEKIVERVLASQTDQWKQELKEHLATLEQEKDELL 120 Query: 121 SWIHEVKTPLTAMQLMIERLTDETLKPKLMYEWLRVHHLLDQQLHQKRIPFMRNDLYIEM 180 SWIHE+KTPLTAM+L+IER+ DE K +L+YEWLR+H LLDQQLHQ+R+P M NDLYIE Sbjct: 121 SWIHEMKTPLTAMRLIIERVGDENTKAQLLYEWLRIHLLLDQQLHQRRLPHMENDLYIEQ 180 Query: 181 IRLEPVLNKEIQALKSWCIPKGIGFDVDLAVEAVLTDGKWLGFILRQLLTNAVKYSENSD 240 + LEP+L EI+ L+SWC+ KGIGFD+ L V +VL+D KWL FI+RQ++TNAVKYSE+SD Sbjct: 181 VELEPLLINEIKPLQSWCMQKGIGFDLQLDVRSVLSDAKWLSFIIRQIITNAVKYSESSD 240 Query: 241 ILIQSREKAGHTVLIIEDHGRGIDPKDLPRIYDKGFTSTTGRQEGAATGMGLYLTKQVAE 300 I+++S K GH L I+D G GIDPKDLPRI++KGFTSTT Q AATGMGLYL K+ A+ Sbjct: 241 IVVKSFMKNGHVRLQIQDFGLGIDPKDLPRIFEKGFTSTTEHQNEAATGMGLYLAKKAAK 300 Query: 301 PLQIGIHADSMLGEGTTFTLTFPRKNDFLRITGM 334 PL + H +S G GTTFT+ FP++ND +R M Sbjct: 301 PLLLDFHVESTPGRGTTFTIIFPQENDIIRTHRM 334 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,831,259,056 Number of extensions: 73496679 Number of successful extensions: 257027 Number of sequences better than 1.0e-05: 9198 Number of HSP's gapped: 257809 Number of HSP's successfully gapped: 9215 Length of query: 334 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 198 Effective length of database: 1,779,438,163 Effective search space: 352328756274 Effective search space used: 352328756274 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)