BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0017.p (491 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KD37.1 B3KD37_9BACI Regulatory protein GntR HTH 513 e-143 B3KEP6.1 B3KEP6_9BACI Extracellular solute-binding protein family 1 175 1e-41 Q2BFC6.1 Q2BFC6_9BACI Putative uncharacterized protein 167 2e-39 B1V3G2.1 B1V3G2_CLOPE ABC-type sugar transport system, periplasm... 83 7e-14 B1RD81.1 B1RD81_CLOPE ABC-type sugar transport system, periplasm... 82 2e-13 >B3KD37.1 B3KD37_9BACI Regulatory protein GntR HTH Length = 451 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 256/450 (56%), Positives = 322/450 (71%), Gaps = 7/450 (1%) Query: 36 MAKIDRHTFQTKTRHMSADLKQKINSGAYSPGEYLPSELALTELYKLSKNSVRYVLDELV 95 MAK DR+T+Q K +HM DL+Q+I G Y+ GEYLPSE+ L ELY LSKNSVR LD+LV Sbjct: 1 MAKSDRYTYQNKMKHMVTDLRQQIKRGTYAQGEYLPSEMTLIELYGLSKNSVRQALDQLV 60 Query: 96 QEGLIIKIPRVGTQV-AKSIAKETIRFGVYPSLYKEAGMEELIRRFHETHPHIHVETIEL 154 QE LI+K+PRVGTQV A S IRFG+YPSLY EA ME ++ F E HP + VE ++L Sbjct: 61 QEELIVKVPRVGTQVVAASRQTRKIRFGLYPSLYAEAEMEYVLALFQERHPEVAVEIVDL 120 Query: 155 PYVSSDSIANLIKLGIVDVLTVNLQDMYQFKERNSLDLFAGQDRHDNIYPFLTTYFEKEP 214 PY +SIANL++LGIVDVL+VN+QDM F+E S LF Q+ + Y FL F Sbjct: 121 PYEHPESIANLMRLGIVDVLSVNIQDMMHFQENGSTGLFHRQEPRASTYTFLHGPFMDAE 180 Query: 215 GVVAAQPFVYSPVILCYNKEHLKEKRLGEPNSSWSWDELATLLRELKAPHRYSIAFQLFS 274 G +AAQPF++SPV+L YNKEHL+EKR EP+SSW WD+L +LREL++P RYS+A QL+S Sbjct: 181 GRLAAQPFIHSPVLLAYNKEHLREKRQFEPDSSWGWDDLQRMLRELRSPGRYSVALQLYS 240 Query: 275 MNRWPIFWMQNEDDPASADYNPSQDGTSLPTEGLRWLRDLVTEEGIFPLALAQGEFEAEK 334 +NRWPIF MQ A+ + S EGL WLR L+ E+G+FPLALAQG FEAEK Sbjct: 241 LNRWPIFLMQRR---GKAEIDASWGRA---VEGLSWLRGLIHEDGMFPLALAQGAFEAEK 294 Query: 335 LFREQKVSVMLTTYYMLNELKNADFSFDIAQLPHFKNDKTLLLSTGIALSAESGHKEPAA 394 LFREQKVSV+LTTYY+LN+LK A F +D+A LPHF + TLLL TGI +SA S +E A Sbjct: 295 LFREQKVSVILTTYYLLNQLKGATFEYDVAPLPHFDHGTTLLLGTGIGVSACSKERELAQ 354 Query: 395 CFVNYLTSDEAQTYIRQHTYSLPASRYITETVSVDMINKPSRLELHRDYSSKYTTYHDLS 454 F ++L SDE Q YIR+HT+S+PA+RYITE V +M +PSRL LHR+ + Y T D+ Sbjct: 355 SFADFLVSDEVQEYIRRHTFSIPANRYITENVDPEMEGRPSRLNLHREIAPLYKTCRDVG 414 Query: 455 MSIETLIRFGESLKQYMSYLTDEEGLAEVL 484 +S++ ++ F E LKQY SYL DE L VL Sbjct: 415 LSLDEMLLFRERLKQYFSYLVDEGELISVL 444 >B3KEP6.1 B3KEP6_9BACI Extracellular solute-binding protein family 1 Length = 483 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 118/408 (28%), Positives = 202/408 (49%), Gaps = 25/408 (6%) Query: 41 RHTFQTKTRHMSADLKQKINSGAYSPGEYLPSELALTELYKLSKNSVRYVLDELVQEGLI 100 R+ F + +L+ +I +G PGE++ E L++ Y++S+ S+R LDELV EGLI Sbjct: 5 RNEFHERYERFVQELRNEIVAGVLQPGEFILPENTLSQKYEMSRVSIRKALDELVNEGLI 64 Query: 101 IKIPRVGTQVAKSIAKET---IRFGVYPSLYKEAGMEELIRRFHETHPHIHVETIELPYV 157 KI G +V T +R + S Y+ +E++I F HP + VE + Sbjct: 65 EKIAGKGNRVKVPDEDRTPVVLRLAWFSSSYEIPIIEKMIEAFERKHPFVQVEMV---LY 121 Query: 158 SSDSIANLIKLGI-----VDVLTVNLQDMYQFKERNSLDLFAG----QDRHDNI-YPFLT 207 S D I I D+ ++ Q ++ E +L G + + + YP + Sbjct: 122 SEDFYTETIIRSIEDDQGPDLFIMSDQHFREWTESGRTNLLTGYVPPRLMEEGVSYPRVF 181 Query: 208 TYFEKEPGVVAAQPFVYSPVILCYNKEHLKEKRLGEPNSSWSWDELATLLR-ELKAPH-- 264 F E G++AA PFV+SPV++CYN+ ++ L S W +L + AP+ Sbjct: 182 ELFNHEGGMLAA-PFVFSPVVICYNRSIFRQHGLSHLVSLGDWQQLLEAAKASTSAPNED 240 Query: 265 ----RYSIAFQLFSMNRWPIFWMQNEDDPASADYNPSQDGTSLPTEGLRWLRDLVTEEGI 320 Y F S NRWP+F +QN+ +AD + S E L + L+ +E + Sbjct: 241 GMTDHYGFCFS-SSPNRWPVFLLQNDGSIMAADRSRSTMADERNIEALEFCVSLMYKEHV 299 Query: 321 FPLALAQGEFEAEKLFREQKVSVMLTTYYMLNELKNADFSFDIAQLPHFKNDKTLLLSTG 380 P+ AE LF +++V+++++TYY +NE ++ +D+ LP T+LL G Sbjct: 300 SPIFSHGSSHLAESLFMKERVAMIMSTYYFMNEFRDHSIDWDVMTLPKGSKPATILLGGG 359 Query: 381 IALSAESGHKEPAACFVNYLTSDEAQTYIRQHTYSLPASRYITETVSV 428 ++++A S H+ A V+++T +EAQ ++Q+ ++P R + E S+ Sbjct: 360 LSINAASSHRNIAEKLVDFMTGEEAQKLLKQYGCTIPVLRSVAEDDSL 407 >Q2BFC6.1 Q2BFC6_9BACI Putative uncharacterized protein Length = 475 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 127/417 (30%), Positives = 200/417 (47%), Gaps = 51/417 (12%) Query: 41 RHTFQTKTRHMSADLKQKINSGAYSPGEYLPSELALTELYKLSKNSVRYVLDELVQEGLI 100 ++ F + +LK++I SG PGE++ E L++ Y LS+ S+R L LV+EGLI Sbjct: 5 KNDFDDRYGRFIHELKEEIISGRIKPGEFILPENTLSKEYDLSRVSIRKALALLVEEGLI 64 Query: 101 IKIPRVGTQVA--KSIAKETIRFGVYPSLYKEAGMEELIRRFHETHPHIHVETIELPYVS 158 KIP G +V + K+TI G + + Y+ +E +I RF + +P+I V +++ Y Sbjct: 65 EKIPGKGNRVTVPQDTQKQTINLGWFSNSYEIEIVERIIERFEQLNPYIKV-NLQI-YPE 122 Query: 159 SDSIANLIKLGIVDVLTVNLQDMYQFKERNSLDLFAGQDRH----------DNIYPFLTT 208 S + NL + K +NS D+F D H I PFL Sbjct: 123 SQYVYNLTE---------------SLKTQNSPDVFMVSDIHFRQLAESGQLGIIDPFLPG 167 Query: 209 YFEKEP-------------GVVAAQPFVYSPVILCYNKEHLKEKRLGEPNSSWSWDELAT 255 + + E V PFV+SPV++CYNK+ +E + E +W +L Sbjct: 168 HIDPEKDSYEKVFDMFTHDNQVLVTPFVFSPVVVCYNKKMFREAGISESFRMDTWKDLLE 227 Query: 256 L----LRELKAPH----RYSIAFQLFSMNRWPIFWMQNEDDPASADYNPSQDGTSLPTEG 307 +E A + +Y F S NRWP F +QN+ + D + S + E Sbjct: 228 TAQDNTKEFNAENSLIAQYGFCFSS-SSNRWPAFLLQNDGKFMTEDRSKSLMNSKENIEA 286 Query: 308 LRWLRDLVTEEGIFPLALAQGEFEAEKLFREQKVSVMLTTYYMLNELKNADFSFDIAQLP 367 L + DL+ + + P+ AE LF ++ +++LTTYY +NE ++ +DI P Sbjct: 287 LNFCVDLMYKHQVSPIFSHGSNDLAENLFMRERAAMILTTYYFMNEFRDHKIKWDIVAPP 346 Query: 368 HFKNDKTLLLSTGIALSAESGHKEPAACFVNYLTSDEAQTYIRQHTYSLPASRYITE 424 N TLLL + +SA S KE A V+Y+ S EAQT I+Q+ ++P R++ E Sbjct: 347 QKSNQATLLLGGALGISANSPVKEAAQALVSYMVSTEAQTMIKQNGCTIPVLRFVAE 403 >B1V3G2.1 B1V3G2_CLOPE ABC-type sugar transport system, periplasmic component Length = 422 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 83/315 (26%), Positives = 141/315 (44%), Gaps = 30/315 (9%) Query: 111 AKSIAKETIR--FGVYPSLYKEAGMEELIRRFHETHPHIHVETIELPYVSSDSIANLIKL 168 A S +E ++ FG++ + +E GM+ L+++F+E +P+I VE P+ + Sbjct: 32 ANSGGEEKVKLTFGIWDKI-QEDGMKSLVKKFNEKNPNIEVEVQVTPWDEYWTKMEAAAT 90 Query: 169 G--IVDVLTVNLQDMYQFKERNSL-DL--FAGQDRHDNIYPFLTTYFEKEPGVVAAQPFV 223 G + DV ++ + ++ + L DL G D + + YP G V P Sbjct: 91 GGELPDVFWMHTNEFLKYASNDMLMDLSNLEGTDGYKD-YPESLVSLASYKGAVYGVPKD 149 Query: 224 YSPVILCYNKEHLKEKRLGEPNSSWSWDELATLLRELKAPHR--YSIAFQLFSMNRW--P 279 + + L YNKE E + P+ SW W++L + ++L + Y A L + P Sbjct: 150 FDTIALVYNKEIFDEANVPYPDESWDWNKLVEVSKQLTNKEKGIYGFAAALEDQQGYLPP 209 Query: 280 IFWMQNEDDPASADYNPSQDGTSLPT-----EGLRWLRDLVTEEGIFPLALAQGEFEAEK 334 I A A +DG S T EGL++ DL + I P + + Sbjct: 210 I---------AQAGGYVLKDGKSGYTDPNTIEGLQFYVDLANKYDISPTLAQLADTNVDT 260 Query: 335 LFREQKVSV-MLTTYYMLNELKNADFS--FDIAQLPHFKNDKTLLLSTGIALSAESGHKE 391 LF+ KV++ L ++ M + + N D + FDIA LP K +++ +A + H E Sbjct: 261 LFQSGKVAMSYLGSWRMSSYVANKDIADKFDIAVLPKGKERASIINGLSFVGNASTKHPE 320 Query: 392 PAACFVNYLTSDEAQ 406 F+++L S EAQ Sbjct: 321 EVKKFLSFLASKEAQ 335 >B1RD81.1 B1RD81_CLOPE ABC-type sugar transport system, periplasmic component Length = 422 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 83/315 (26%), Positives = 140/315 (44%), Gaps = 30/315 (9%) Query: 111 AKSIAKETIR--FGVYPSLYKEAGMEELIRRFHETHPHIHVETIELPYVSSDSIANLIKL 168 A S +E ++ FG++ + +E GM+ L+ +F+E +P+I VE P+ + Sbjct: 32 ANSGGEEKVKLTFGIWDKI-QEDGMKSLVEKFNEKNPNIEVEVQVTPWDEYWTKMEAAAT 90 Query: 169 G--IVDVLTVNLQDMYQFKERNSL-DL--FAGQDRHDNIYPFLTTYFEKEPGVVAAQPFV 223 G + DV ++ + ++ + L DL G D + + YP G V P Sbjct: 91 GGELPDVFWMHTNEFLKYASNDMLMDLSNLEGTDGYKD-YPESLVSLASYKGAVYGVPKD 149 Query: 224 YSPVILCYNKEHLKEKRLGEPNSSWSWDELATLLRELKAPHR--YSIAFQLFSMNRW--P 279 + + L YNKE E + P+ SW W++L + ++L + Y A L + P Sbjct: 150 FDTIALVYNKEIFDEANVPYPDESWDWNKLVEVSKQLTNKEKGIYGFAAALEDQQGYLPP 209 Query: 280 IFWMQNEDDPASADYNPSQDGTSLPT-----EGLRWLRDLVTEEGIFPLALAQGEFEAEK 334 I A A +DG S T EGL++ DL + I P + + Sbjct: 210 I---------AQAGGYVLKDGKSGYTDPNTIEGLQFYVDLANKYDISPTLAQLADTNVDT 260 Query: 335 LFREQKVSV-MLTTYYMLNELKNADFS--FDIAQLPHFKNDKTLLLSTGIALSAESGHKE 391 LF+ KV++ L ++ M + + N D + FDIA LP K +++ +A + H E Sbjct: 261 LFQSGKVAMSYLGSWRMSSYVANKDIADKFDIAVLPKGKERASIINGLSFVGNASTKHPE 320 Query: 392 PAACFVNYLTSDEAQ 406 F+++L S EAQ Sbjct: 321 EVKKFLSFLASKEAQ 335 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,884,939,403 Number of extensions: 119136978 Number of successful extensions: 315334 Number of sequences better than 1.0e-05: 110 Number of HSP's gapped: 315544 Number of HSP's successfully gapped: 110 Length of query: 491 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 351 Effective length of database: 1,741,754,103 Effective search space: 611355690153 Effective search space used: 611355690153 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)