BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0016.p (558 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K467.1 B3K467_9BACI Extracellular solute-binding protein family 1 695 0.0 B3KIA5.1 B3KIA5_9BACI Extracellular solute-binding protein family 1 151 2e-34 B3K9G0.1 B3K9G0_9BACI Extracellular solute-binding protein family 1 149 9e-34 B3K7Z2.1 B3K7Z2_9BACI Extracellular solute-binding protein family 1 147 3e-33 B1DB24.1 B1DB24_9BACL Extracellular solute-binding protein family 1 129 7e-28 >B3K467.1 B3K467_9BACI Extracellular solute-binding protein family 1 Length = 535 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/536 (64%), Positives = 426/536 (79%), Gaps = 12/536 (2%) Query: 31 MLKKRISIMLAATLFSSILAACG-----SSTDKSGSAALPSQ--EPGQYGDTGTLTLPLV 83 M KK + L TL SILAAC ++ + G A P+ +P QYGDTG L LPLV Sbjct: 1 MTKKWFRMALVFTLIISILAACSGGNKEAAPETDGETAPPTAPADPDQYGDTGGLALPLV 60 Query: 84 DKPTTITYMLPSNAKDLGPGKLVVQELEKRTGIKVDFQTYSPQTYQDKLKVIVASGKLPD 143 DKPTTI +M+ S +L L+ +E+EKRTGIKV+FQ YS T+QDKLKV VASGKLPD Sbjct: 61 DKPTTINWMVVSEKTNLN-DSLLAKEIEKRTGIKVNFQPYSSATFQDKLKVTVASGKLPD 119 Query: 144 IFTGLKPAELKKIGKQNGVVAINKYADQLPNFKKLYMEENDWVLKSFGDEAGDIYTWPIY 203 I GL P ELKKIGKQ VVAIN+Y D LPNFK++Y++EN WV+ S+GDE+G+IYTWP+ Sbjct: 120 IIHGLTPPELKKIGKQKAVVAINEYVDMLPNFKRMYVDENPWVIPSYGDESGNIYTWPVA 179 Query: 204 NLNRKVNHGFMFRKDIFDELGIKEWTNTDEFYEALKKVKAAYPDSYPYASKSLANIFRDW 263 N+NR VNHGF++RKDIFDELGIKEWTNTDEFY+ALKK+K AYPDSYPYASK+ NIFRDW Sbjct: 180 NINRDVNHGFLYRKDIFDELGIKEWTNTDEFYQALKKLKEAYPDSYPYASKTKENIFRDW 239 Query: 264 AFGWGLGNTDQYPAYYDEKDGTWKYAAVQQAHKDMLDFMKKLYNEKLLDPEFLTDTQDSW 323 AFGWG+G + YP YYDE WKYA +Q HK+MLDFMKKLYNE LLDPEF+TDT DSW Sbjct: 240 AFGWGIGGAN-YPTYYDETAKVWKYATIQPEHKEMLDFMKKLYNEGLLDPEFMTDTDDSW 298 Query: 324 TTKMTT-DKSFVTFDWIGRLDLFYNQIKEQNPDYDLRYANPVGPTGNVRTLPEVSD-FSV 381 T KMT+ +KSFVT+DWIGRLDLFYNQ+K+QNP+YDLRY NPVGPTGN +T+ +++ FS+ Sbjct: 299 TAKMTSGNKSFVTYDWIGRLDLFYNQVKDQNPNYDLRYGNPVGPTGNGKTIESITNGFSI 358 Query: 382 AVAKNKNTEASLKLLDYLTSPSGSELMTIGVEGVNFEWGEDGFPVYPELKDLPLVDITVL 441 AVA N N EASLKLLDYLTSPSG+ L+T+GVEG F+ D VYPEL D+PLVDI+VL Sbjct: 359 AVANNDNKEASLKLLDYLTSPSGATLVTMGVEGETFKMEGDK-AVYPELTDVPLVDISVL 417 Query: 442 EDRYAMWLEGAYLRPDHRSIYYRFSEKEQEAQDKIVKEDRFEPLDPILNFTDEETSKIAE 501 EDRY +WL+G Y+ D RS+Y+ ++EKEQEAQDK++ ++FEPLDP++NFTD+ET+KIAE Sbjct: 418 EDRYGLWLQGLYVNSDKRSVYFNYTEKEQEAQDKLLNGNKFEPLDPVVNFTDDETAKIAE 477 Query: 502 LQTSLQKSAEEFNAKYILDAGYGEAQWADFQTKLSRSGVEELMSIYNEAQKRYDES 557 +QTSL+K A+EFNAKYIL+ YG+AQW +Q + + G ++++ I+N AQKR DE+ Sbjct: 478 IQTSLKKLADEFNAKYILNKNYGDAQWQQWQAQAEKQGAKQIVDIFNAAQKRLDEA 533 >B3KIA5.1 B3KIA5_9BACI Extracellular solute-binding protein family 1 Length = 542 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 137/544 (25%), Positives = 255/544 (46%), Gaps = 43/544 (7%) Query: 20 LVVYMKEERLMMLKKRISIM-LAATLFSSILAACGSSTDKSGSAALPSQEPGQYGDTGTL 78 ++++ E + + +++ + LAA + ++L+ C K +A + E G TL Sbjct: 23 IIIHKGEGCVKIWNRKLGLAALAAVMTGALLSGCS----KDNAANEGNHESADTGKEITL 78 Query: 79 TLPLVDKPTTITYMLPSNAKDLGPGKLVVQELEKRTGIKVDFQTYSPQTYQDKLKVIVAS 138 + + T Y K+ P + + L++ TGI Q Y + + ++S Sbjct: 79 EM-MTFSHTNWPY------KENWP---IYKYLKEETGISFKVQPVM-SDYTTTMNLAISS 127 Query: 139 GKLPDIFTGLKPAELKKIGKQNGVVAINKYADQLPNFKKLYMEENDWVLKSFGDEAGDIY 198 G++PD+ G V ++ DQ+PN+KK +++++ V + G Y Sbjct: 128 GEIPDLMMVNSLNAANTHGASGAFVDYFEHLDQMPNYKK-FLDDHPEVKAAILSPEGKNY 186 Query: 199 TWPIYNLNRKVNHGFMFRKDIFDELGIKEWTNTDEFYEALKKVKAAYPDSYPYASKSLAN 258 P+Y L ++ +++R DIF + + T DE Y KK+K YPDS+P A + + Sbjct: 187 FMPLYGLEQQSRRSWLYRDDIFKKHNLTPPTTYDELYTVAKKLKELYPDSFPIAVFNGLS 246 Query: 259 IFRDWAFGWGLGNTDQYPAYYDEKDGTWKYAAVQQAHKDMLDFMKKLYNEKLLDPEFLTD 318 + A + ++ YYD + W+Y + +K M+++M K Y E L+ P+F+ Sbjct: 247 PLVNMAPAFNTNSS----YYYDFEKNEWRYGPTEDNYKKMVEYMNKFYAEGLVAPDFMAH 302 Query: 319 TQDSWTTKMTTDKSFVTFDWIGRLDLFYNQIKEQNPDYDLRY-----ANPVGPTGNVRTL 373 + + + +KSF+ D+IG +D + + + ++ L Y P G + NV Sbjct: 303 KRKQFNDLLLQNKSFIASDYIGIMDELPLMLGDASSEFSLDYMVPPIGTPDGKSHNVFAG 362 Query: 374 PEVSDFSVAVAKNKNTEASLKLLDYLTSPSGSELMTIGVEGVNFEWGEDGFPV----YPE 429 + F+VA A +K + L+ LD+L SP G EL T G EG F E+G Y E Sbjct: 363 LQSDGFAVA-ANSKERDRLLQYLDFLFSPEGIELATWGREGETFT-TENGVRTFNDDYKE 420 Query: 430 LKDLPLVDITVLEDRYAMWLEGAYLRPDHRSIYYRFSEKEQEAQDKIVKEDRFEPLDPIL 489 D L + + GA++ D + +S K +EA KI + +P P L Sbjct: 421 FGD--------LRTKTGIATIGAHIVLDMTAYESMYSPKMREAM-KIAPDHETKP-QPRL 470 Query: 490 NFTDEETSKIAELQTSLQKSAEEFNAKYILDAGYGEAQWADFQTKLSRSGVEELMSIYNE 549 +T+EE ++ + +++K EE AK+IL + +W + ++++ GV++++ ++ Sbjct: 471 AYTNEENEVLSMVGETVKKFHEEQIAKFILGQKPMD-EWDTYVQEVNKLGVQQVLDVHQS 529 Query: 550 AQKR 553 A +R Sbjct: 530 AYER 533 >B3K9G0.1 B3K9G0_9BACI Extracellular solute-binding protein family 1 Length = 516 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 161/558 (28%), Positives = 256/558 (45%), Gaps = 82/558 (14%) Query: 31 MLKKRISIMLAATLFSSILAACGSSTDKSGSAALPSQEPGQYGDTGTLTLPLVDKPTTIT 90 M +K LA L ++L + K D+GTL+ DKP T + Sbjct: 1 MRRKGFRTALAMILLCAMLVTGCTGGGKD--------------DSGTLS---PDKPVTFS 43 Query: 91 YMLPSNAKDLGPGKL-----VVQELEKRTGIKVDFQTYSPQTYQDKLKVIVASGKLPDIF 145 +++ D GK+ + +E+E +TG+KV FQ S + ++K ++++A+ D F Sbjct: 44 WLV----YDRVEGKVRDDWEIFKEIEAKTGVKVKFQIVSQEGLEEKRQIMIATNTATD-F 98 Query: 146 TGLKPAELKKIGKQNGVVAINKYADQLPNFKKLYMEENDWVLKSFGDEAGDIYTWPIYNL 205 + + ++ G + + +N Y D+ PN K Y + + + G + G +YT P+ Sbjct: 99 IQVPTQDGREHGPEKVFLNLNDYLDRAPNLKAFYEKYPEAKALATGTDGG-LYTVPVLEG 157 Query: 206 NRKVNHGFMF----RKDIFDELGIKEWTNTDEFYEALKKVKAAYPDSYPYASKSL----- 256 + + GF F RKDI D+ GI+ T DEFY+ LK +K PDSYP S ++ Sbjct: 158 DAE-GKGFNFIWYARKDIMDQHGIQAPTTVDEFYQYLKTLKEKVPDSYPLISNAIVGDTG 216 Query: 257 -----ANIFRDWAFGWGLG-NTDQYPAYYDEKDGTWKYAAVQQAHKDMLDFMKKLYNEKL 310 IF + + L TDQY +A + ++DML ++ KLY EKL Sbjct: 217 LYTTFGRIFTGISGFYNLDPTTDQYA-----------FAPYHENYQDMLVYLNKLYAEKL 265 Query: 311 LDPEFLTDTQDSWTTKMTTDKSFVTFDWIGRLDLFYNQIK-EQNPDYDLRYANPVGPTGN 369 LDPEF TQ W ++ T KS VTF W L+ + + +Y+L A P Sbjct: 266 LDPEFSLLTQAQWEERILTGKSLVTFFWKADLESLVAKARGAGTAEYELD-AIPSFAAEG 324 Query: 370 VR----TLPEVSDFSVAV-AKNKNTEASLKLLDYLTSPSGSELMTIGVEGVNFEWGEDGF 424 ++ + P V A+ AK K+ E +++ LDYL S G+ +++G+EG + EDG Sbjct: 325 IKNYQFSRPVVGTVGRAISAKVKDKERAVQFLDYLVSEEGTNYLSLGIEGKTYTM-EDGK 383 Query: 425 PVY-PELKDLPLVDITVLEDRYAMWLEGAYL-RPDHRSIYYR-FSEKEQEAQDKIVKEDR 481 VY E + P L + +W + L R ++ R SEK ++ + E Sbjct: 384 AVYNKEFGESPF---NALRKDWGVWYDLITLNNAKSREVWERGLSEKSKDINARY--EQY 438 Query: 482 FEPLDPILNFTDEET----SKIAELQTSLQKSAEEF--NAKYILDAGYGEAQWADFQTKL 535 P + T+EE SK+ L L++ EF I D+ Y Q+ D KL Sbjct: 439 IVPAPKQIVKTEEELELEKSKLNNLNKFLEQKVTEFVTGKTPINDSTY--QQFIDQAKKL 496 Query: 536 SRSGVEELMSIYNEAQKR 553 G +EL+++YN A R Sbjct: 497 ---GSDELLAMYNTAYTR 511 >B3K7Z2.1 B3K7Z2_9BACI Extracellular solute-binding protein family 1 Length = 536 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 156/549 (28%), Positives = 253/549 (46%), Gaps = 44/549 (8%) Query: 32 LKKRISIMLAATLFSSILAACGSSTDKSGSAALPSQEPGQYGDTGTLTLPLVDKPTTITY 91 L+K SI+L TL +++LAACGS G+A PS G P+VD+P T+T Sbjct: 4 LRKASSILLCLTLSATMLAACGSPKG-DGAATAPSGTASTEG-VKKEGFPIVDEPITLTV 61 Query: 92 MLPSNAKDLGPGKL----VVQELEKRTGIKVDFQTYSPQTYQDKLKVIVASGKLPDIF-- 145 M ++D G V+QE+EK +GIK+++Q +++ K ++ ASG LPD+F Sbjct: 62 M----SQDAGVADWNTMPVLQEMEKLSGIKLEYQLSPIDSFETKKNLVFASGDLPDMFYA 117 Query: 146 TGLKPAELKKIGKQNGVVAINKYADQ--LPNFKKLYMEENDWVLKSFGDEAGDIYTWPIY 203 LKPAE G Q ++ + KY D+ PN KK++ +EN V KSF G IY P Sbjct: 118 ADLKPAEQVTYGSQGILIPLEKYIDEGYAPNIKKIF-DENPDVRKSFTTPDGHIYALPFV 176 Query: 204 NLNRKVNHGFMFRKDIF-DELGIKEWTNTDEFYEALKKVKAAYP------DSYPYASKSL 256 + G M+ F L + E T+E Y LK+VK P D P S L Sbjct: 177 DKAAVWYRGPMWYNGKFLKALNVSEPKTTEELYTFLKRVKEEDPNGNGKKDEIPLTSVKL 236 Query: 257 ANIFRDWAFG-WGLGNTDQYPAYYDEKDGTWKYAAVQQAHKDMLDFMKKLYNEKLLDPEF 315 ++ R + FG WG+ N Y +KDG Y ++ +K L FM +L+ E+LLD E Sbjct: 237 DDL-RMYFFGFWGMYNE----GIYSDKDGKVHYPYQEEGYKGYLTFMNRLWKEELLDHET 291 Query: 316 LTDTQDSWTTKMTTDKSFVTFDWIGRLDLFYNQIKEQNPDYDLRYANPVGPT-GNVRTLP 374 + T D K ++ + D+ L E ++ P G + Sbjct: 292 FSQTGDQKKAKGENNQLALFNDYHAYFTLGGEPSSEHPLMTPVKSEIADSPVYGMHPGMS 351 Query: 375 EVSDFSVAVAKNKNTEASLKLLDYLTSPSGSELMTIGVEGVNFEWGEDGFPVYPELKDLP 434 F+++ + N EA+++ +DYL S G+ L G EG +++ ++ V + LP Sbjct: 352 ARGTFAIS-SSNPAPEATMRWIDYLYSYEGATLFNQGPEGTLWKFKDEANRVK---EWLP 407 Query: 435 LVDITVLED-------RYAMWLEGAYLRPDHRSIYYRFSE-KEQEAQDKIVKEDRFEPLD 486 + E+ Y + G + + F E +Q+ Q+K+V + P Sbjct: 408 VPGGGDREEYRGKITPNYGILTPGVNDPDVAKGLRTEFDEWIDQQNQEKLVPIGK-SPF- 465 Query: 487 PILNFTDEETSKIAELQTSLQKSAEEFNAKYILDAGYGEAQWADFQTKLSRSGVEELMSI 546 P + T+EE S+ L + L+ ++ AK++ E W + ++ + G + L+ + Sbjct: 466 PNVYLTNEEQSEATALLSDLETYVKQMEAKFVTGQEPLE-NWDKYVAQVKKMGSDRLVEL 524 Query: 547 YNEAQKRYD 555 Y A R++ Sbjct: 525 YQGAYDRWN 533 >B1DB24.1 B1DB24_9BACL Extracellular solute-binding protein family 1 Length = 552 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 138/527 (26%), Positives = 232/527 (44%), Gaps = 84/527 (15%) Query: 85 KPTTITYMLPSNAKDLGP---GKLVVQELEKRTG--IKVDFQTYSPQTYQDKLKVIVASG 139 KP + + LPSN D GK +E+E G + +DF Y +KLK+++AS Sbjct: 49 KPLSFSVALPSNGVDNENSMMGKEWQKEMEAYMGRKVNIDFNYIPSSEYDEKLKLMIASN 108 Query: 140 KLPDIFTGLKPAELKKIGKQNGVVAINKYADQLPNFKKLYMEENDWVLKSFGDEAGDIYT 199 LPD F + ++ +Q ++ +++Y D +PN+ Y+ + L + G +YT Sbjct: 109 DLPDFFVTPLFYDTTEMAEQGQILELSQYKDLMPNYMN-YLSKVKNGLTRVTNAEGKMYT 167 Query: 200 W-----PIYNLNRK--VNHGFMFRKDIFDELGIKEWTNTDEFYEALKKVKAAYPDSYPYA 252 + P + ++ + + +R DIF + IK D+ Y+A KK+K YPD YP A Sbjct: 168 FKETSTPRFPADKGMLIQNTSSYRYDIFQQNNIKIPETWDDVYQAAKKLKELYPDKYPIA 227 Query: 253 SK--SLANIFRDWAFGWGLGNTDQYPAYYDEKDGTWK-----YAAVQQAHKDMLDFMKKL 305 ++ SL ++F A + + D W Y + +KD L F KL Sbjct: 228 TRWNSLRSLF---------------AADHVKDDIYWNGSKYVYGVQEDGYKDALQFANKL 272 Query: 306 YNEKLLDPEFLTDTQDSWTTKMTTDKSFVTFDWIGRL--------------DLFYNQIKE 351 Y EKLLDPE+ DT D+ K +F+ W+ + +F + Sbjct: 273 YAEKLLDPEYTIDTDDTLKRKALNGDNFI---WLTQWFTTPAEYTRTLNDGKVFAVTLYP 329 Query: 352 QNPDYDLRYANPVGPTGNVRTLPEVSDFSVAVAKNKNTEASLKLLDYLTSPSGSELMTIG 411 NPDY + GN L + F + AK K E +K +DY + L+T G Sbjct: 330 NNPDYGTAWQEVAN--GNTPDL-GWAQFCIN-AKTKVAEDLIKFIDYQYTDKMMNLITWG 385 Query: 412 VEGVNFEWGEDGFPVYP-ELKDLPLVDITVLEDRYAM-----WLEGAYLRPDHRSI---- 461 +EG + G DG + E K+ P D ++ D+Y + + G + D ++ Sbjct: 386 IEGTTYTVGADGVQTFTDEFKNAP--DPWLVGDKYGIRASKNYNPGLQMVNDSKAFVDFA 443 Query: 462 ---YYRFSEKEQEAQDKIVKEDRFEPL-----------DPILNFTDEETSKIAELQTSLQ 507 Y F K +E + R P+ +P + FT +E+ KI+E+ ++ Sbjct: 444 ATDYTYFDGKYEEVPIEKSPYLRSLPMPQNDYVPSSYSEPSIQFTQDESQKISEIMNPVK 503 Query: 508 KSAEEFNAKYILDAGYGEAQWADFQTKLSRSG-VEELMSIYNEAQKR 553 E AK++ + W+ F KL + G +++++ IYN+A +R Sbjct: 504 TFVTEEQAKFVSGKNKFD-DWSKFIDKLKKMGDIDKVLQIYNDAAQR 549 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,552,531,976 Number of extensions: 161005238 Number of successful extensions: 358292 Number of sequences better than 1.0e-05: 235 Number of HSP's gapped: 358009 Number of HSP's successfully gapped: 238 Length of query: 558 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 417 Effective length of database: 1,732,333,088 Effective search space: 722382897696 Effective search space used: 722382897696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 134 (56.2 bits)