BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0567.0015.p
         (80 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K468.1 B3K468_9BACI Binding-protein-dependent transport system...   144   3e-33
C0TGQ2.1 C0TGQ2_9PSEU Carbohydrate ABC transporter membrane prot...   105   2e-21
C4BF12.1 C4BF12_9MICO Carbohydrate ABC transporter membrane prot...   103   5e-21
C4RNI0.1 C4RNI0_9ACTO Multiple sugar ABC transporter permease         102   1e-20
C1W1G4.1 C1W1G4_9MICO Carbohydrate ABC transporter membrane prot...   102   1e-20

>B3K468.1 B3K468_9BACI Binding-protein-dependent transport systems inner
           membrane component
          Length = 321

 Score =  144 bits (363), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 77/80 (96%)

Query: 1   MFILKTGSMIRVGYEKVLLLYNPMTYDVADVFSTYVYRKGLLESNYSYAAAVGLFEALVA 60
           MF+LKTGSM+R+GYEKVLLLYNPMTY+VADVFSTYVYRKGLLESNYSY AAVGLFEA+VA
Sbjct: 242 MFVLKTGSMLRIGYEKVLLLYNPMTYEVADVFSTYVYRKGLLESNYSYGAAVGLFEAVVA 301

Query: 61  MVMLLSANAVSKRLGGNGLW 80
           M++LLS+N  SKRLGG+GLW
Sbjct: 302 MILLLSSNYFSKRLGGSGLW 321


>C0TGQ2.1 C0TGQ2_9PSEU Carbohydrate ABC transporter membrane protein 1, CUT1
           family
          Length = 332

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 64/80 (80%)

Query: 1   MFILKTGSMIRVGYEKVLLLYNPMTYDVADVFSTYVYRKGLLESNYSYAAAVGLFEALVA 60
           + IL TG+ + VG+EK+LLL NP+TY   DV STY+YR GL+ +N+SYAAA+GLFEALV 
Sbjct: 253 LLILNTGTFMAVGFEKILLLQNPLTYPTGDVVSTYLYRVGLVSNNFSYAAAIGLFEALVG 312

Query: 61  MVMLLSANAVSKRLGGNGLW 80
           +V++LSANA+S+R  G  LW
Sbjct: 313 LVLILSANAISRRAVGTSLW 332


>C4BF12.1 C4BF12_9MICO Carbohydrate ABC transporter membrane protein 1, CUT1
           family
          Length = 324

 Score =  103 bits (257), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 62/80 (77%)

Query: 1   MFILKTGSMIRVGYEKVLLLYNPMTYDVADVFSTYVYRKGLLESNYSYAAAVGLFEALVA 60
           + IL  G+ + VG+EKVLLLYNPMTY   DV STY+YR GL+ +N SYAAA+GLF+A++ 
Sbjct: 245 LLILNIGNFLNVGFEKVLLLYNPMTYSTGDVISTYLYRVGLVSNNLSYAAAIGLFQAIIG 304

Query: 61  MVMLLSANAVSKRLGGNGLW 80
            VM++SAN +SKRL G  LW
Sbjct: 305 FVMVMSANYISKRLVGTSLW 324


>C4RNI0.1 C4RNI0_9ACTO Multiple sugar ABC transporter permease
          Length = 333

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/80 (58%), Positives = 61/80 (76%)

Query: 1   MFILKTGSMIRVGYEKVLLLYNPMTYDVADVFSTYVYRKGLLESNYSYAAAVGLFEALVA 60
           + IL  G+ + VG+EKVLLLYNP+TY  ADV STY+YR G   SN+SYAAA+GLFEAL+ 
Sbjct: 254 LLILNIGTFMAVGFEKVLLLYNPLTYPTADVISTYLYRMGFESSNFSYAAAIGLFEALIG 313

Query: 61  MVMLLSANAVSKRLGGNGLW 80
           + ++L+AN +SKR  G  LW
Sbjct: 314 LTLVLTANIISKRTVGTSLW 333


>C1W1G4.1 C1W1G4_9MICO Carbohydrate ABC transporter membrane protein 1, CUT1
           family
          Length = 340

 Score =  102 bits (253), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 64/80 (80%)

Query: 1   MFILKTGSMIRVGYEKVLLLYNPMTYDVADVFSTYVYRKGLLESNYSYAAAVGLFEALVA 60
           + IL  GS + VG+EKVLLLYNP+TY  ADV STY+YR G++ SN+SYA A+GLFE+++ 
Sbjct: 261 LLILNIGSFMAVGFEKVLLLYNPLTYPTADVISTYLYRIGIVSSNFSYATAIGLFESIIG 320

Query: 61  MVMLLSANAVSKRLGGNGLW 80
           + ++LSANA+S+RL G  LW
Sbjct: 321 LTLILSANALSRRLVGTSLW 340


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 408,560,789
Number of extensions: 12268773
Number of successful extensions: 45547
Number of sequences better than 1.0e-05: 279
Number of HSP's gapped: 45537
Number of HSP's successfully gapped: 279
Length of query: 80
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 29
Effective length of database: 2,580,224,438
Effective search space: 74826508702
Effective search space used: 74826508702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)