BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0013.p (287 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K469.1 B3K469_9BACI Binding-protein-dependent transport system... 439 e-121 B1D5I1.1 B1D5I1_9BACL Binding-protein-dependent transport system... 257 1e-66 B3K4X1.1 B3K4X1_9BACI Binding-protein-dependent transport system... 257 1e-66 B1DF32.1 B1DF32_9BACL Binding-protein-dependent transport system... 252 2e-65 B3KIA8.1 B3KIA8_9BACI Binding-protein-dependent transport system... 251 6e-65 >B3K469.1 B3K469_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 212/284 (74%), Positives = 243/284 (85%), Gaps = 1/284 (0%) Query: 5 RKISWFGVINXXXXXXXXXXXXYPIVYITAISLSDTVSVVQGKVFLFPKGFNFEAYGEVL 64 R IS FG+IN YP+VYITA+SLS T VVQG + LFPKGFN +AY +VL Sbjct: 10 RNISLFGIINTLILTCLAIITVYPVVYITAVSLSATSEVVQGNITLFPKGFNLDAYAQVL 69 Query: 65 KNDTIPRAYLNSVFYTALGTFLNLLFTAVAAYPLSQKGFFGRKFFMTAIVLTMFLNPGII 124 +D +PRAYLN++FYTALGT +NLL TAVAAYPL++K FFGRKFF+ AI++TMFLNPGII Sbjct: 70 NDDRVPRAYLNTIFYTALGTAINLLLTAVAAYPLARKNFFGRKFFLLAIIMTMFLNPGII 129 Query: 125 PTYVVVQQLGLTDSVWALVLPNAIWTMELIILKSFYENMSSQIREAALIDGASEYRILFN 184 P Y++V +LGL DSVWALVLPNAIWT EL+ILKSFYENMS +REAA++DGASEYRILF Sbjct: 130 PNYLIVSELGLLDSVWALVLPNAIWTFELLILKSFYENMSESLREAAVVDGASEYRILFQ 189 Query: 185 IVIPLSKPALASIGLFYFMGHWNSFFLPLIYLNDADKYPLQVVLRDMLIYSAE-NDAGLV 243 IV+PLSKPALASIGLFYFMGHWNSFF+PLIYLNDA+ YPLQVVLRDMLI+S ++ LV Sbjct: 190 IVLPLSKPALASIGLFYFMGHWNSFFIPLIYLNDANMYPLQVVLRDMLIFSENGSNPSLV 249 Query: 244 DRSALAPQSIKNATIVLSMIPVLLIYPFAQKYFAKGVMLGSEKG 287 D SALAPQ++KNATIVLSMIPVLLIYPFAQKYFAKGVMLGSEKG Sbjct: 250 DASALAPQAMKNATIVLSMIPVLLIYPFAQKYFAKGVMLGSEKG 293 >B1D5I1.1 B1D5I1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 295 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 127/266 (47%), Positives = 190/266 (71%), Gaps = 5/266 (1%) Query: 27 YPIVYITAISLSDTVSVVQGKVFLFPKGFNFEAYGEVLKNDTIPRAYLNSVFYTALGTFL 86 YP+++I + S SD V+ G V+L P+G N EAY +L+ND I Y NS+ YT +GT + Sbjct: 30 YPLLFIVSASFSDPSKVLNGDVWLLPQGLNVEAYANILQNDKIWIGYGNSIMYTVIGTVI 89 Query: 87 NLLFTAVAAYPLSQKGFFGRKFFMTAIVLTMFLNPGIIPTYVVVQQLGLTDSVWALVLPN 146 N++ T +AAYPLS+ R M I +TMF + G+IPTY++V+ LG+ D++WAL++P Sbjct: 90 NIIMTILAAYPLSRPDLPLRNGIMVLITMTMFFSGGLIPTYLLVKDLGMVDTMWALIVPG 149 Query: 147 AIWTMELIILKSFYEN-MSSQIREAALIDGASEYRILFNIVIPLSKPALASIGLFYFMGH 205 AI T LI+++++++N + +++EAA +DG S +R+L +I++PLSKP LA + LFY +GH Sbjct: 150 AIATYNLIVMRTYFQNSIPWELQEAAHMDGCSNWRLLVSIILPLSKPILAVMVLFYAVGH 209 Query: 206 WNSFFLPLIYLNDADKYPLQVVLRDMLI--YSAENDAGLV--DRSALAPQSIKNATIVLS 261 WNSFF LIY+ D KYPLQ+VLR++L+ SA+ D G V ++ L +SIK A I++S Sbjct: 210 WNSFFNALIYIRDEGKYPLQLVLREILLISQSAQTDGGSVGLEKQILLSESIKFAVIIVS 269 Query: 262 MIPVLLIYPFAQKYFAKGVMLGSEKG 287 +PVL++YPF Q++F KGVM+GS KG Sbjct: 270 SLPVLVMYPFVQRHFVKGVMIGSIKG 295 >B3K4X1.1 B3K4X1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 297 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 126/266 (47%), Positives = 189/266 (71%), Gaps = 6/266 (2%) Query: 27 YPIVYITAISLSDTVSVVQGKVFLFPKGFNFEAYGEVLKNDTIPRAYLNSVFYTALGTFL 86 YP+++I + S SD V+ G+V+L PKG +AY +L ND I Y N++ YT +GT + Sbjct: 33 YPLLFIVSASFSDPARVLNGEVWLLPKGVTLDAYENILHNDKIWTGYRNTILYTTIGTAI 92 Query: 87 NLLFTAVAAYPLSQKGFFGRKFFMTAIVLTMFLNPGIIPTYVVVQQLGLTDSVWALVLPN 146 N++ T +AAYPLS+ GR M I LTMF N G+IPTY++V+ LG+ D++WAL++P Sbjct: 93 NIIMTILAAYPLSRPDLPGRNGIMVLITLTMFFNGGLIPTYLLVKDLGMVDTMWALIIPG 152 Query: 147 AIWTMELIILKSFYE-NMSSQIREAALIDGASEYRILFNIVIPLSKPALASIGLFYFMGH 205 AI T LI+++++++ ++ +++EAA IDG S +R+LF+I++PLSKP LA + LFY +GH Sbjct: 153 AIATYNLIVMRTYFQSSIPWELQEAAHIDGCSNWRLLFSIILPLSKPILAVMVLFYAVGH 212 Query: 206 WNSFFLPLIYLNDADKYPLQVVLRDMLIYS----AENDAGLVDRSALAPQSIKNATIVLS 261 WNSFF LIY+ + D +PLQ+VLR++L+ S + GL ++S L +SIK A I++S Sbjct: 213 WNSFFNALIYIRNEDLHPLQLVLREILLISQSDAVDGSVGL-EKSILLAESIKYAVIIVS 271 Query: 262 MIPVLLIYPFAQKYFAKGVMLGSEKG 287 +PVLL+YP Q++F KGVM+GS KG Sbjct: 272 SLPVLLMYPLVQRHFVKGVMIGSIKG 297 >B1DF32.1 B1DF32_9BACL Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 124/266 (46%), Positives = 185/266 (69%), Gaps = 6/266 (2%) Query: 27 YPIVYITAISLSDTVSVVQGKVFLFPKGFNFEAYGEVLKNDTIPRAYLNSVFYTALGTFL 86 YP++++ + S+SD V+ G V+L PKG EAY + N+ + Y N++ YT GT + Sbjct: 30 YPLLFVFSASVSDPARVLDGGVWLLPKGITLEAYTNIFHNNEVWIGYRNTIIYTVAGTVI 89 Query: 87 NLLFTAVAAYPLSQKGFFGRKFFMTAIVLTMFLNPGIIPTYVVVQQLGLTDSVWALVLPN 146 N++ T +AAYPLS+ GRK M I LTMF + G+IPTY++V+ LG+ D++WALV+P Sbjct: 90 NIIMTTLAAYPLSRPDLPGRKMLMMLITLTMFFSGGLIPTYLLVKNLGMVDTIWALVVPG 149 Query: 147 AIWTMELIILKSFYE-NMSSQIREAALIDGASEYRILFNIVIPLSKPALASIGLFYFMGH 205 AI T LI+++++++ ++ +I+EA IDG S +R+L NI++PLSKP LA + LFY +GH Sbjct: 150 AISTYNLIVMRTYFQSSIPWEIQEAGHIDGCSNWRLLVNIILPLSKPILAVMVLFYAVGH 209 Query: 206 WNSFFLPLIYLNDADKYPLQVVLRDMLIYS----AENDAGLVDRSALAPQSIKNATIVLS 261 WNSFF LIY+ D YPLQ+VLR++L+ S + + GL D+ LA +SIK A I++S Sbjct: 210 WNSFFNALIYMRDESHYPLQLVLREILMISQSSAVDGNVGLEDKILLA-ESIKYAIIIVS 268 Query: 262 MIPVLLIYPFAQKYFAKGVMLGSEKG 287 +PV ++YPF Q++F GVM+GS KG Sbjct: 269 SLPVWIMYPFVQRHFVTGVMIGSIKG 294 >B3KIA8.1 B3KIA8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 287 Score = 251 bits (640), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 124/284 (43%), Positives = 184/284 (64%), Gaps = 2/284 (0%) Query: 6 KISWFGVINXXXXXXXXXXXXYPIVYITAISLSDTVSVVQGKVFLFPKGFNFEAYGEVLK 65 K +WF +N YP VY+ A+SLSD+ S+ G+V+L+PKGFN + Y V + Sbjct: 4 KWNWFDALNALILTGVVGACLYPFVYMLAVSLSDSASIASGEVWLWPKGFNLDMYQYVFE 63 Query: 66 NDTIPRAYLNSVFYTALGTFLNLLFTAVAAYPLSQKGFFGRKFFMTAIVLTMFLNPGIIP 125 + + + Y N++ Y LGT ++LL TA+ AY LS+ K + IV TMF N G+IP Sbjct: 64 DGRVLKGYKNTLIYVVLGTTISLLVTALGAYSLSKAKLVMGKPILMLIVFTMFFNGGMIP 123 Query: 126 TYVVVQQLGLTDSVWALVLPNAIWTMELIILKSFYENMSSQIREAALIDGASEYRILFNI 185 T++VV++LG +++W +VLP A+ T L+I+++F+ M ++ E+ IDG SE I F I Sbjct: 124 TFLVVKELGFVNTIWGMVLPGAVATWNLLIMRTFFMGMPQELEESGKIDGLSEIGIFFRI 183 Query: 186 VIPLSKPALASIGLFYFMGHWNSFFLPLIYLNDADKYPLQVVLRDMLIYS--AENDAGLV 243 V+PLSKP LA+IGL+Y +G WN+F PL+YL DAD PLQV+LR++++ D +V Sbjct: 184 VLPLSKPVLATIGLYYAVGMWNNFMGPLLYLRDADMQPLQVILRNIVLSGQLTGTDGPVV 243 Query: 244 DRSALAPQSIKNATIVLSMIPVLLIYPFAQKYFAKGVMLGSEKG 287 + +K ATI++S +P+LL+YPF QKYF KG ++GS KG Sbjct: 244 GDIVVVEDGLKFATIMVSTLPILLVYPFIQKYFVKGALIGSVKG 287 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.142 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,577,120,825 Number of extensions: 62472193 Number of successful extensions: 199470 Number of sequences better than 1.0e-05: 5890 Number of HSP's gapped: 191357 Number of HSP's successfully gapped: 5891 Length of query: 287 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 153 Effective length of database: 1,798,280,193 Effective search space: 275136869529 Effective search space used: 275136869529 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)