BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0011.p (737 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5Q6.1 B3K5Q6_9BACI Putative uncharacterized protein 1081 0.0 A9U7P5.1 A9U7P5_PHYPA Predicted protein (Fragment) 552 e-155 B3KD38.1 B3KD38_9BACI Putative uncharacterized protein 232 9e-59 Q2BFD1.1 Q2BFD1_9BACI Putative uncharacterized protein 217 3e-54 B3KEX8.1 B3KEX8_9BACI Carbohydrate-binding CenC domain protein 187 3e-45 >B3K5Q6.1 B3K5Q6_9BACI Putative uncharacterized protein Length = 1079 Score = 1081 bits (2796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/694 (75%), Positives = 594/694 (85%), Gaps = 1/694 (0%) Query: 1 MKKPFSNLITMFMSCLLVLVMYPVQPAPAAAEDSRLSQKNFSEPEELLIPNNYTVAVFNG 60 M+ S +FM L +L++ AA+ +SRL+QK + PEE+L+PNNYTVAVFNG Sbjct: 1 MRFAKSGKYQVFMLALCLLLVCSGGGLAAASGESRLAQKTYGTPEEILVPNNYTVAVFNG 60 Query: 61 AVGYEDGKPVMYATSKGKPGYLNVIDLEEYKLLRTVSLAPSESSWAHTVAPNGTLYVASE 120 G E+G+ V+YATSKGKPG+LNVIDLE+YKLLR++ + PSESSWAHT AP+GTL++A++ Sbjct: 61 TAGKEEGRNVLYATSKGKPGHLNVIDLEDYKLLRSIPIGPSESSWAHTTAPDGTLFLAAD 120 Query: 121 GAGARLWEYSPVTHEAVQVAEFAGQSVSNSITTDEQGRVYVGTYPGGKVWQYDPATRQVR 180 G GARLW YSPVTH VQVA+F GQSV NSITTDEQGRVYVGTYPGGKV+QYDPAT+Q + Sbjct: 121 GGGARLWSYSPVTHVPVQVAQFDGQSVPNSITTDEQGRVYVGTYPGGKVYQYDPATKQTK 180 Query: 181 DYGRVIGALDQEYVRSIAYQGGYIYAGTAHKQIVRVDLNTGEKTDIAASLNVKNDTVYDL 240 DYGRVIG+LDQEYVRSIAYQGG IYAGTAHKQIVRV+L TGEKT+IAASL VK DTVYDL Sbjct: 181 DYGRVIGSLDQEYVRSIAYQGGNIYAGTAHKQIVRVNLATGEKTNIAASLPVKEDTVYDL 240 Query: 241 STIDNRYLFARYTDGSGIPGEGYIYDTATGSWLDVELQQVTGLHAADSVGGKLYYMSEKK 300 STIDNRYLFARYTDGSGIPGE +IYDT T SWLDV L+ VTGLHA DS+ GKLYYMS+KK Sbjct: 241 STIDNRYLFARYTDGSGIPGEAFIYDTQTESWLDVVLENVTGLHATDSLDGKLYYMSDKK 300 Query: 301 LKTFDLATHQVEETGMTYESGFRGADWVEF-NNPELPGKTLVTVRYDGGVAMLNIDTKKV 359 LKTF+LATH+VE TGM Y SGFRG DWVEF NNPE PGK LVTVRYDGGV ++NI+TK+V Sbjct: 301 LKTFNLATHEVELTGMEYNSGFRGVDWVEFPNNPEYPGKNLVTVRYDGGVTIMNIETKQV 360 Query: 360 IVKPPIIPGLPGVVNRLQSVSDTQLITTGSQARSSLVDLESMTAKPFSIGQADSVYPIGN 419 + PP+IPGLPGVVNRL+SVSDTQLITTGSQARSSLVDL + TA PFSIGQADSV+ +GN Sbjct: 361 HLMPPVIPGLPGVVNRLKSVSDTQLITTGSQARSSLVDLTNNTATPFSIGQADSVHAVGN 420 Query: 420 KVYMGVYPEGGLYVYDLNQEPGSTNPQRLAVLGNDQERLVHMSEGDGKLFISTISGYGTL 479 KVYMGVYPEGGLY +DL+ EPG NP+RLAVLGNDQERLV +S GKL+ISTISGYGTL Sbjct: 421 KVYMGVYPEGGLYEFDLSTEPGMNNPKRLAVLGNDQERLVDISSSKGKLYISTISGYGTL 480 Query: 480 GGSLTVHDTATGETKVHRNVVQNQSVLSTAYVNGKIFGSTTIRGGLGSTPSEQEAKIFVW 539 GGSLTV+DTATGE VHRNVVQNQSVLST +GK+FGSTTIRGGLGS P+E EAKIFVW Sbjct: 481 GGSLTVYDTATGEINVHRNVVQNQSVLSTTVHDGKVFGSTTIRGGLGSEPTEAEAKIFVW 540 Query: 540 DVQKEQKITEFTLDIPELTDPIFIGDLSLGPDGLIWGASYEYIFAIDPDTYKLVKYKKIY 599 D + +QKITEF L +P L PIFIGDLS GPDGLIWGASYEYIFAIDPDTY++VK KK+Y Sbjct: 541 DEETQQKITEFPLRVPGLDKPIFIGDLSAGPDGLIWGASYEYIFAIDPDTYEVVKSKKVY 600 Query: 600 PKLYYTQWHHHPMRWSEDGLLYVLFNNKLTVIDPETLEFRTLTDASRFDLGRDGNLYFTD 659 P L ++QW HHP+RWSEDGLLYVLFNNKLTVIDPETLE RTL D SRFDL DGNLYFTD Sbjct: 601 PSLNFSQWAHHPLRWSEDGLLYVLFNNKLTVIDPETLEHRTLADTSRFDLHADGNLYFTD 660 Query: 660 LATNTILYRIKIDGEMVPEPPGLPLPVNNAGVEQ 693 + TNTILYR+++DGE+V EPP +PV N G E+ Sbjct: 661 MQTNTILYRMEVDGEVVEEPPHTAVPVTNPGFEE 694 >A9U7P5.1 A9U7P5_PHYPA Predicted protein (Fragment) Length = 403 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 260/381 (68%), Positives = 321/381 (84%), Gaps = 2/381 (0%) Query: 316 MTYESGFRGADWVEF-NNPELPGKTLVTVRYDGGVAMLNIDTKKVIVKPPIIPGLPGVVN 374 M Y SGFRGADWVEF NNP+LPGK LVTVRYDGGVA++NI+TK+V + P ++PGLPGVVN Sbjct: 1 MEYNSGFRGADWVEFPNNPDLPGKNLVTVRYDGGVAIMNIETKQVHLMPSVVPGLPGVVN 60 Query: 375 RLQSVSDTQLITTGSQ-ARSSLVDLESMTAKPFSIGQADSVYPIGNKVYMGVYPEGGLYV 433 R+QS D L TG Q +R S++D ++T+ FSIGQADSVYP+G+K+YMGVYPEG L+ Sbjct: 61 RIQSAPDGNLFVTGVQTSRGSIIDPNTLTSSAFSIGQADSVYPLGDKMYMGVYPEGALFE 120 Query: 434 YDLNQEPGSTNPQRLAVLGNDQERLVHMSEGDGKLFISTISGYGTLGGSLTVHDTATGET 493 YD+ + PG+ NP++ VL N QERLV+M+ G GKL+I+TI GYGTLGGS+TV+D ATG++ Sbjct: 121 YDMTKPPGTENPKKTFVLENGQERLVNMTSGGGKLYIATIPGYGTLGGSVTVYDPATGDS 180 Query: 494 KVHRNVVQNQSVLSTAYVNGKIFGSTTIRGGLGSTPSEQEAKIFVWDVQKEQKITEFTLD 553 +VHRNVVQ+QSVLS AY +GK+FGSTTIRGGLGS PS EAKIFVWD Q EQKITEF L Sbjct: 181 RVHRNVVQDQSVLSLAYKDGKLFGSTTIRGGLGSEPSADEAKIFVWDTQTEQKITEFPLR 240 Query: 554 IPELTDPIFIGDLSLGPDGLIWGASYEYIFAIDPDTYKLVKYKKIYPKLYYTQWHHHPMR 613 I L P+FIGDLS+GPDGLIWGA+YEY+FA+DP+TY++VK KK+ + YTQW HH +R Sbjct: 241 IAGLDKPVFIGDLSVGPDGLIWGAAYEYVFALDPNTYQVVKSKKVQSGVSYTQWAHHTIR 300 Query: 614 WSEDGLLYVLFNNKLTVIDPETLEFRTLTDASRFDLGRDGNLYFTDLATNTILYRIKIDG 673 WSEDGL+YVLFNNKLTVIDP+TLE RT+T+A+RF+LG+DGN+YFTD ATNTI+YRI++DG Sbjct: 301 WSEDGLMYVLFNNKLTVIDPQTLESRTITNAARFELGKDGNIYFTDNATNTIMYRIEVDG 360 Query: 674 EMVPEPPGLPLPVNNAGVEQA 694 E+V +PPG+PLPV N G E A Sbjct: 361 EIVEQPPGIPLPVKNPGFEDA 381 >B3KD38.1 B3KD38_9BACI Putative uncharacterized protein Length = 511 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 162/478 (33%), Positives = 249/478 (52%), Gaps = 40/478 (8%) Query: 2 KKPFSNLITMFMSCLLVLVMYPVQPAPAAAEDSRLSQKNFSEPEELLIPNNYTVAVFNGA 61 KK +L LL V +P A A+AE K +S+P +L P +VA+++GA Sbjct: 45 KKGLRHLCLTICVTLLTAVFFP---ASASAEIG----KTYSDPIDLGSPMQ-SVAIYDGA 96 Query: 62 VGYEDGKPVMYATSKGKPGYLNVIDLEEYKLLRTVSLAPSESSWAHTVAPNGTLYVASEG 121 G +DG+ V+Y T GKP +VIDL+ ++L T L SESSW H P+GT+Y+ G Sbjct: 97 FGIQDGREVIYTTVSGKPAIFHVIDLKTKEVLSTHPLTGSESSWTHLTTPDGTVYIGGNG 156 Query: 122 AGARLWEYSPVTHEAVQVAEFAGQSVSNSITTDEQGRVYVGTYPGGKVWQYDPATRQVRD 181 L+ YSPVT + + G+ V ++ DEQGRVY G+YP K +YDPAT +++D Sbjct: 157 T---LYAYSPVTKQLKNLGGI-GEQVVYGLSHDEQGRVYFGSYPNAKAGRYDPATGEMKD 212 Query: 182 YGRVIGALDQEYVRSIAYQGGYIYAGTA-HKQIVRVDLNTGEKTDIAASLNVKNDTVYDL 240 YG V Q Y RS AY GGY+Y G IV+V++ TGEK I L N V D+ Sbjct: 213 YGIV--GTGQSYSRSTAYHGGYLYVGIGIEGSIVKVNVATGEKETI--QLPSYNGAV-DI 267 Query: 241 STIDNRYLFARY-TDGSGIPGEGYIYDTATGSWLDVELQQVTGLHAADSVG--------- 290 ++ + +Y G G G ++ D+ELQQ + + ++ G Sbjct: 268 GMVNQLDVAGKYLVAGIGKGNSGLLF-------YDLELQQWSDTYHLNNKGIRLSYGPEG 320 Query: 291 -GKLYYMSEKKLKTFDLATHQVEETGMTYESGFRGADWVEF-NNPELPGKTLVTVRYDGG 348 K+Y++ L DL T +TG+ Y + R WVE N+P+LPG +L TV++ G Sbjct: 321 SNKIYFVQNNHLMEVDLNTLAAVDTGVVYGTFLRNTAWVEVPNDPDLPGVSLATVQFGGS 380 Query: 349 VAMLNIDTKKVIVKPPIIPGLPGVVNRLQSVSDTQLITTG-SQARSSLVDLESMTAKPFS 407 VA +N+ TK+V P + G P V +++ D +L +G S +++ T + F Sbjct: 381 VAYMNLTTKQVKAVPYPVKGNPIPVQTMETGPDGRLFISGYPGGTGSAYSIDTGTFETFP 440 Query: 408 IGQADSVYPIGNKVYMGVYPEGGLYVYDLNQEPGSTNPQRLAVLGNDQERLVHMSEGD 465 +GQ++ + + K+YMGVYP G +++ N E + + G D+ ++ +EG+ Sbjct: 441 MGQSEGMVAMNGKMYMGVYP--GADIFEYNAENPTQRKSLFKITGQDRPFIMRAAEGN 496 >Q2BFD1.1 Q2BFD1_9BACI Putative uncharacterized protein Length = 943 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 169/607 (27%), Positives = 293/607 (48%), Gaps = 52/607 (8%) Query: 66 DGKPVMYATSKGKPGYLNVIDLEEYKLLRTVSLAPSESSWAHTVAPNGTLYVASEGAGAR 125 +G V+Y G P ++D+E +L+++ L + +W VA +G++Y+ G Sbjct: 217 NGNDVLYTVVAGAPAKFAIVDVETEELIKSYPLEDTSGAWGVKVAADGSVYLGGYNQG-Y 275 Query: 126 LWEYSPVTHEAVQVAE--FAGQSVSNSITTDEQGRVYVGTYPGGKVWQYDPATRQVRDYG 183 L+ Y P T V + +V + G++Y GTY G V++YDP + Q ++G Sbjct: 276 LYRYLPETDSLVNLGHPVKTTDAVLYPMDISSDGKIYGGTYGSGSVYEYDPDSGQFTNFG 335 Query: 184 RVIGALDQEYVRSIAY--QGGYIYAGTAHK-QIVRVDLNTGEKTDIAASLNVKNDTVYDL 240 + A Q +VRS AY + IYAG K ++ D+ TG K +I S +VYDL Sbjct: 336 TM--AEGQSWVRSTAYDEKNQRIYAGVGSKAHLIEYDIKTGTKRNILPSQYADIISVYDL 393 Query: 241 STIDNRYLFARYTDGSGIPGEGYIYDTATGSWLDVELQQVTGLHAAD------------S 288 + I + LFA+ E +I DT +G ++ + + TGL D Sbjct: 394 NLIQGK-LFAQKESSY----EMFIIDTESGELVEA-MNEDTGLKTFDIPESSRGISGKSP 447 Query: 289 VGGKLYYMSEKKLKTFDLATHQVEETGMTYESGFRGADWVEFNNPELPGKTLVTVRYDGG 348 VG K+Y+ L +DL + + G + +++ PG TLV + +GG Sbjct: 448 VGEKVYFTHLGILHEYDLKKNSFKSLGADLKGSAISYKFLQLKEEGFPGYTLVGLSGNGG 507 Query: 349 -VAMLNIDTKKVIVKPPIIPGLPGVVNRLQSVSDTQLITTG--SQARSSLVDLESMTAKP 405 + N++T K+ + +P P ++ L D ++ +TG + + Sbjct: 508 KLYKYNLETGKLKLTDLALPAEPVQIHELAKGPDGKIYSTGYLPGNMGAYIPTSGKNIVF 567 Query: 406 FSIGQADSVYPIGNKVYMGVYPEGGLYVYDLNQE-----PGSTNPQRLAVLGNDQE---- 456 IGQ++ + K+Y+G+YP +Y +D +E S NP L L +++ Sbjct: 568 DGIGQSEGTATLNGKMYLGIYPNARIYEFDPFKEWNRTDSDSLNPGLLFSLEKNEQIPGY 627 Query: 457 -------RLVHMSEGDGKLFISTISGYGTLGGSLTVHDTATG-ETKVHRNVVQNQSVLST 508 ++ + E + +LFI T+ G LGG+L +++ TG E V+ N++Q+QS++S Sbjct: 628 TPQDRPFAMLGVPEHN-QLFIGTVPKNGNLGGALAIYEPGTGKEPDVYWNIMQDQSIVSL 686 Query: 509 AYVNGKIFGSTTIRGGLGSTPSEQEAKIFVWDVQKEQKITEFTLDIPELTDPIFIGDLSL 568 ++ GK+FG TT+ GG GS P+ EAK+FVWD++ +QK E IP + I L++ Sbjct: 687 THIGGKVFGGTTVAGGQGSVPATSEAKLFVWDIENKQKTAEL---IP-VPGKKAITALTI 742 Query: 569 GPDGLIWGASYEYIFAIDPDTYKLVKYKKIYPKLYYTQWHHHPMRWSEDGLLYVLFNNKL 628 G DG IWG + +FA+DP++ +++ ++ K + W + + DG +Y + K Sbjct: 743 GADGNIWGMADGTLFALDPESIEVIASYQLDDKT-SSNWRNASLEIGTDGNIYGIIGRKF 801 Query: 629 TVIDPET 635 +P+ Sbjct: 802 FKFNPQN 808 >B3KEX8.1 B3KEX8_9BACI Carbohydrate-binding CenC domain protein Length = 1026 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 175/633 (27%), Positives = 293/633 (46%), Gaps = 71/633 (11%) Query: 71 MYATSKGKPGYLNVIDLEEYKLLRTVSLAPSESSWAHTVAPNGTLYVASEGAGARLWEYS 130 +Y + G P +D +++ + + + + +G +Y++ G L+ YS Sbjct: 227 VYFATNGTPSTFYALDASTGEVIYSSPVQGVNTVYGVAAGSDGNVYISGVENG-MLYRYS 285 Query: 131 PVTHEAVQVAEFAGQSVSNSITTDEQGRVYVGTYPGGKVWQYDPATRQVRDYGRVIGALD 190 P V + + + G++Y TYP K+++YD A+ Q RD G V D Sbjct: 286 PAAKTLESVGVNPSEKLVWDLAATSDGKIYGATYPNSKIFEYDIASNQFRDLGSV--RED 343 Query: 191 QEYVRSIAYQGGYIYAGTAHKQ-IVRVDLNTGEKTDIAASLNVKNDTVYDLSTIDNRYLF 249 Y R I YIY G + + ++D TGE++++ + ND + D+ + + + LF Sbjct: 344 VMYARGIGVTEQYIYVGVGNPAYLYKIDRQTGEQSEVKLPNSGDNDMIADIWSYNGK-LF 402 Query: 250 ARYTDGSGIPGEGYIYDTATGSWLDVELQQV-------------TGLHAADSVGGKLYYM 296 R SG T LD E ++V + + + L Y Sbjct: 403 VR----SG---------ATTLFILDEETEEVLQSLPWPSPTRFDSMISPPSPLDRDLVYF 449 Query: 297 SE---KKLKTFDLATHQV--EETGMTYESGFRGADWVEFNNPELPGKTLVTVRYDGGVAM 351 +L T++ AT+++ E + S R DWV GKTL+ AM Sbjct: 450 RNVVNSELVTYNTATNEIIPLEGVVLPNSTVRAYDWVTPQTGHKAGKTLL--------AM 501 Query: 352 LNIDTKKVIVKPP------IIPGLPGVVNRLQSVS---DTQLITTGSQARSSLVDLES-- 400 + + V+ P I+P + +QS+ + +L G S+ + S Sbjct: 502 VTEKLEYVLFDPEDRSVETIMPEIEAEGIDIQSMEMGPEGKLYMGGFHTALSIFNPVSNA 561 Query: 401 --MTAKPFSIGQADSVYPIGNKVYMGVYPEGGLYVYDLNQE-PGSTNPQRLAVLGNDQER 457 + + F Q + + + +KVY G Y +Y YD +Q NP + + Q R Sbjct: 562 YELQERVFP--QIEGIGFLNDKVYFGTYGGAVIYRYDPSQPYKKDVNPSLAFNIEDGQSR 619 Query: 458 LVHMSEGDGKLFISTISGYGTLGGSLTVHDTATGETKVHRNVVQNQSVLSTAYVNGKIFG 517 + GD +LFI TI+ YG + G+LT++D T ++V+NQSV+S AY +G ++G Sbjct: 620 PFAFASGDDQLFIGTIADYGLVKGALTMYDEPTDTWTTIPDIVENQSVMSVAYKDGLVYG 679 Query: 518 STTIRGGLGSTPSEQEAKIFVWDVQKEQKITEFTLDIPELTDPIFIGDLSLGPDGLIWGA 577 TTI GG GSTP+ EAK+F++D + + K+ EF+ IP +T IGDL GPDGL+WG Sbjct: 680 GTTIHGGGGSTPAASEAKMFIFDPKAKSKVKEFSPAIPGMTSHQLIGDLKEGPDGLLWGV 739 Query: 578 SY---------EYIFAIDPDTYKLVKYKKIYPKL-YYTQWHHHPMRWSEDGLLYVLFNNK 627 ++ +FA+D + + K K +YP + W + +R+ +DGLLY Sbjct: 740 TWGKTASGTTVYSVFAMDAASQVIKKSKLLYPNTPSGSTWRPYFLRFGDDGLLYTTVGRT 799 Query: 628 LTVIDPETLEFRTLTDA-SRFDLGRDGNLYFTD 659 LTVI+PET++ + + D+ + L DG +Y+ + Sbjct: 800 LTVINPETMDSQKIADSVNLMTLAEDGGIYYAE 832 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,713,410,176 Number of extensions: 216752922 Number of successful extensions: 491728 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 491646 Number of HSP's successfully gapped: 20 Length of query: 737 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 594 Effective length of database: 1,713,491,058 Effective search space: 1017813688452 Effective search space used: 1017813688452 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)