BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0010.p (313 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5Q6.1 B3K5Q6_9BACI Putative uncharacterized protein 282 3e-74 Q9K5X4.1 Q9K5X4_BACHD BH3963 protein 90 3e-16 Q9Z9Q9.1 Q9Z9Q9_BACHD YesT (Fragment) 89 4e-16 B1DAL1.1 B1DAL1_9BACL Nucleic acid binding OB-fold tRNA/helicase... 82 6e-14 B1DB37.1 B1DB37_9BACL Ig domain protein group 2 domain protein 67 2e-09 >B3K5Q6.1 B3K5Q6_9BACI Putative uncharacterized protein Length = 1079 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 140/309 (45%), Positives = 196/309 (63%) Query: 1 MFRFYNAEGQTLSTLETHLDESRLHQWQKVTLRGKAPEGAASARIIAVTSRYNISSAYYD 60 MFRF+++ T+STLETHLDESRL QWQKVTLRGKAP AA A++IAVTSRYN+++AYYD Sbjct: 767 MFRFFDSNNATISTLETHLDESRLAQWQKVTLRGKAPANAAYAKLIAVTSRYNVATAYYD 826 Query: 61 DFSVFEKDNTAPLTEVTMNPQPNEQGWHNKDVSITLNSEGAAALFYETKGAESIDQREAA 120 DF V KD+ P++ V+++P PNE GW N DVS++++S+ A ++ Y +GA+ I++ Sbjct: 827 DFFVTVKDSVPPVSTVSLSPSPNENGWVNADVSLSISSDRAYSIAYAAEGAQPIEKTTVK 886 Query: 121 GSSTEFTVGAEGVTEVTYWAKSVYGVPGVPSTIGLKIDKTAPVIEFSGESVYEVNDVIRI 180 GS+ + + EGVT VTY A + GV P T+ ++IDKTAPV+EFSGE Y V D + + Sbjct: 887 GSTAQLQITEEGVTTVTYSATNFSGVSEAPGTLNVQIDKTAPVVEFSGERTYTVTDSVYV 946 Query: 181 GCSAQDALSGIASGDCDAVLADSPAYLAGIGEHTVDATVSDIAGNAVQSSFSYEVILTYE 240 CSA D+LSG+A C L + PAY G H + T D+AGN +S F +EV +TY+ Sbjct: 947 SCSAVDSLSGLADNPCSLPLLERPAYSFEPGSHEISVTAVDLAGNKTESVFRFEVAVTYD 1006 Query: 241 GIAGLIDQFLAHDPKLAGRLKDQLALAQSXXXXXXXXXXXXXXXXFIYQVQAMSGKGLAP 300 + GL+++F D +A L +L A+ F QV+A G L Sbjct: 1007 SLIGLVERFAGSDQGIAQSLSTKLQGAKEAEDRGNDSAKQGKLNAFTNQVRAQFGNKLTD 1066 Query: 301 EHAELLVQF 309 EHA++L + Sbjct: 1067 EHADVLAKL 1075 >Q9K5X4.1 Q9K5X4_BACHD BH3963 protein Length = 995 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 106/238 (44%), Gaps = 18/238 (7%) Query: 81 QPNEQGWHNKDVSITLN----SEGAAALFYETKGAESIDQREAAGSSTEFTVGAEGVTEV 136 Q GW+N V I L G FY E S + EG+ V Sbjct: 761 QELRNGWYNSTVMIELEPTDADSGVTDTFYTVNNGEQ-------QSGQLIVLEEEGIYHV 813 Query: 137 TYWAKSVYGVPGVPSTIGLKIDKTAPVIEFSGE--SVYEVNDVIRIGCSAQDALSGIASG 194 +YW+ G + + + IDKTAP I FS E +V+ V+ + + C+ +D LSG+ S Sbjct: 814 SYWSMDHSGNIEEKNQVEVSIDKTAPTITFSIEPNTVFTVDQEVHLTCAIEDQLSGVDSF 873 Query: 195 DCDAVLADSPAYLAGIGEHTVDATVSDIAGNAVQSSFSYEVILTYEGIAGLIDQFLA-HD 253 C+ AY G+G H A +D AGN ++ + + + ++ +A L QF+ H+ Sbjct: 874 TCEDTT--KFAYELGVGTHMFTAAATDKAGNHIKKTMEIIIEVDFDSLASLSQQFVELHN 931 Query: 254 PK--LAGRLKDQLALAQSXXXXXXXXXXXXXXXXFIYQVQAMSGKGLAPEHAELLVQF 309 + + L+ +L A++ F+ QV + SGK + EHAE+L+ Sbjct: 932 GEAHIVEGLQSKLVAAKNANEKGNTRARDNQLKAFVNQVNSQSGKAFSSEHAEILIDL 989 >Q9Z9Q9.1 Q9Z9Q9_BACHD YesT (Fragment) Length = 688 Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 106/238 (44%), Gaps = 18/238 (7%) Query: 81 QPNEQGWHNKDVSITLN----SEGAAALFYETKGAESIDQREAAGSSTEFTVGAEGVTEV 136 Q GW+N V I L G FY E S + EG+ V Sbjct: 454 QELRNGWYNSTVMIELEPTDADSGVTDTFYTVNNGEQ-------QSGQLIVLEEEGIYHV 506 Query: 137 TYWAKSVYGVPGVPSTIGLKIDKTAPVIEFSGE--SVYEVNDVIRIGCSAQDALSGIASG 194 +YW+ G + + + IDKTAP I FS E +V+ V+ + + C+ +D LSG+ S Sbjct: 507 SYWSMDHSGNIEEKNQVEVSIDKTAPTITFSIEPNTVFTVDQEVHLTCAIEDQLSGVDSF 566 Query: 195 DCDAVLADSPAYLAGIGEHTVDATVSDIAGNAVQSSFSYEVILTYEGIAGLIDQFLA-HD 253 C+ AY G+G H A +D AGN ++ + + + ++ +A L QF+ H+ Sbjct: 567 TCEDTT--KFAYELGVGTHMFTAAATDKAGNHIKKTMEIIIEVDFDSLASLSQQFVELHN 624 Query: 254 PK--LAGRLKDQLALAQSXXXXXXXXXXXXXXXXFIYQVQAMSGKGLAPEHAELLVQF 309 + + L+ +L A++ F+ QV + SGK + EHAE+L+ Sbjct: 625 GEAHIVEGLQSKLVAAKNANEKGNTRARDNQLKAFVNQVNSQSGKAFSSEHAEILIDL 682 >B1DAL1.1 B1DAL1_9BACL Nucleic acid binding OB-fold tRNA/helicase-type Length = 1100 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 101/190 (53%), Gaps = 21/190 (11%) Query: 61 DFSVFEK-DNTAPLTEVTMNPQPNEQGWHNKDVSITL----NSEGAAALFYETKGAESID 115 DF V + DN P E +++ PN +GW N+DV +T+ NSEG FY +++ Sbjct: 718 DFMVVQPVDNEPPTAEASLSASPNAEGWFNQDVQVTVTAKDNSEGTVESFY------ALN 771 Query: 116 QREAAGSSTEFTVGAEGVTEVTYWAKSVYGVPGVPSTIGLKIDKTAP--VIEFSGESVYE 173 A ++ V AEG +Y+A G S++ +++DKTAP V+ SG V + Sbjct: 772 NDSFANYTSPVNVTAEGNHTFSYYAVDAAGNKSSVSSVNVQLDKTAPAAVLTQSGGQVSD 831 Query: 174 VNDVIRI--GCSAQDALSGIASGDC---DAVLADSPAYLA---GIGEHTVDATVSDIAGN 225 V + + ++ D+LSG+AS + V+A+ + A GIG HTV TV+D AGN Sbjct: 832 VVETANLVYDLASSDSLSGVASEQLLLDNNVIANGYSVAASKLGIGSHTVKYTVTDKAGN 891 Query: 226 AVQSSFSYEV 235 +S++++V Sbjct: 892 TSTASYTFKV 901 >B1DB37.1 B1DB37_9BACL Ig domain protein group 2 domain protein Length = 1517 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 109/271 (40%), Gaps = 31/271 (11%) Query: 54 ISSAYYDDFSVFEKDNTAPLTEVTMNP-QPNEQG-WHNKDVSITLNS----EGAAALFYE 107 S ++DD D TAP+T MNP QP+ G W++K V++ L++ G A Y Sbjct: 1249 FSEFWFDDVKFTLIDRTAPVTAAAMNPVQPDGTGDWYSKPVTVDLSAIDSGTGVAGTEYS 1308 Query: 108 TKGAESIDQREAAGSSTEFTVGAEGVTEVTYWAKSVYGVPGVPSTIGLKIDKTAPVIEFS 167 T G + + + T +G + Y + G TI K+D + P + Sbjct: 1309 TDGGATWLPYQ-----NQLTFTDDGDYSLLYRSVDAAGNREDNKTISFKLDTSGPETSIT 1363 Query: 168 G--ESVYEVNDVIRIGCSAQDALSGIASGDCDAVL--------ADSPAYLAGIGEHTVDA 217 G E Y ++ + + + D +SG+ G A L A P Y G HT Sbjct: 1364 GLEEKAYANSETVNLSWAVSDTVSGVDEGKTTAQLDGQTVQQGAAIPLYTLAAGSHTFTV 1423 Query: 218 TVSDIAGNAVQSSFSYEVILTYEGIAGLIDQFLAHDPKLAGRLKDQLALAQSXXXXXXXX 277 +V+D+AGN +S ++ + L+ QF + D +A S Sbjct: 1424 SVTDLAGNTRESKVTFTAYADISSLKELVAQFYELN------WIDNQGIANS----LTKK 1473 Query: 278 XXXXXXXXFIYQVQAMSGKGLAPEHAELLVQ 308 FI V+A SGK + E A L++ Sbjct: 1474 LENGSLDAFINHVEAQSGKHIQAEAAAYLLR 1504 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,684,826,998 Number of extensions: 64389794 Number of successful extensions: 135323 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 135323 Number of HSP's successfully gapped: 15 Length of query: 313 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 178 Effective length of database: 1,788,859,178 Effective search space: 318416933684 Effective search space used: 318416933684 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 131 (55.1 bits)