BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0009.p (246 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9KQB0.1 A9KQB0_CLOPH Methyltransferase type 11 362 2e-98 A9KRP0.1 A9KRP0_CLOPH Methyltransferase type 11 209 2e-52 Q2BEH4.1 Q2BEH4_9BACI Putative uncharacterized protein 197 1e-48 C3HL45.1 C3HL45_BACTU UbiE/COQ5 methyltransferase 195 2e-48 C1ELM4.1 C1ELM4_BACC3 Putative uncharacterized protein 195 2e-48 >A9KQB0.1 A9KQB0_CLOPH Methyltransferase type 11 Length = 237 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 171/237 (72%), Positives = 196/237 (82%), Gaps = 1/237 (0%) Query: 10 NSSFWDTKGTEILGATALPLYGAFVSEEQCRLFGDIAGKKLLEIGCGSGQSLQYMGERKA 69 N SFWDTKG E++G TALPLYGAFVSEE+CRLFG+++GKKLLEI CG+G SLQY G+R A Sbjct: 2 NGSFWDTKGNEVIGTTALPLYGAFVSEEKCRLFGNVSGKKLLEICCGTGHSLQYHGDRNA 61 Query: 70 AELWGTDISEKQIEKTGQLLKSCGLSATLICSPMEEECGIPEDYFDFVYSVYAIGWTTDL 129 +ELWG DISEKQIEK Q L S G A L CSPMEE+CGIP DYFD+VYS+Y +GW+TDL Sbjct: 62 SELWGIDISEKQIEKAKQHLSSKGYLAKLFCSPMEEDCGIPVDYFDYVYSIYGVGWSTDL 121 Query: 130 EATFGRIASYLKKDGIFIFSWSHPIHKCVGAENNMLVFKKSYFDESWYSVXXXXXXXXXX 189 TF RIASYLKKDG+FIFSWSHPIHKCV EN+ L FKK YFDESWYSV Sbjct: 122 AGTFCRIASYLKKDGVFIFSWSHPIHKCVAFENDSLSFKKCYFDESWYSVSLDGGAISLS 181 Query: 190 DRKLSTYVNALSKAGFVIEQMVEESDEEIMQSRNDNSDFAKKAKMLPVTFVFKARKL 246 DRKLSTY+NAL+KAGF+I++M+EESD+EI+Q + D SDFAKKAKMLPVTFV KARKL Sbjct: 182 DRKLSTYINALTKAGFIIDEMIEESDDEIIQLKKD-SDFAKKAKMLPVTFVIKARKL 237 >A9KRP0.1 A9KRP0_CLOPH Methyltransferase type 11 Length = 250 Score = 209 bits (532), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 107/250 (42%), Positives = 152/250 (60%), Gaps = 4/250 (1%) Query: 1 MDKNAIHKTNSSFWDTKGTEILGATALPLYGAFVSEE-QCRLFGDIAGKKLLEIGCGSGQ 59 M + N + WD E G+T+LP YG + E LF + KK+LEIGCGSG Sbjct: 1 MKDTKVLAQNKTSWDFIADEWFGSTSLPTYGPTLPNEGTLNLFDSLDNKKVLEIGCGSGH 60 Query: 60 SLQYMGERKAAELWGTDISEKQIEKTGQLLKSCGLSATLICSPMEEECGIPEDYFDFVYS 119 SL Y ++ A ELWG D+S KQIE +LL + A L SPME+ GIPE+YFDFVYS Sbjct: 61 SLLYTAKQGAKELWGLDLSSKQIENAEKLLSENNVIANLFVSPMEDNPGIPENYFDFVYS 120 Query: 120 VYAIGWTTDLEATFGRIASYLKKDGIFIFSWSHPIHKCVGAENNMLVFKKSYFDESWYSV 179 +YA GWTTDL+ + + YLKK G+FI SW +P+ +C+ AE N +SY DE+ + Sbjct: 121 IYAFGWTTDLKQSIDLVHKYLKKSGVFILSWDNPLMQCIEAEGNKYTIFRSYLDEATIDL 180 Query: 180 XXXXXXXXXXDRKLSTYVNALSKAGFVIEQMVEESDEEIMQSRNDNS--DFAK-KAKMLP 236 + KLS+Y+N L+ AGF I++++EE+D++I+ D + ++K KAK++ Sbjct: 181 SKGNQAMKIKNWKLSSYINELASAGFKIDKLIEETDKDILAQEYDFTLKYYSKHKAKLIN 240 Query: 237 VTFVFKARKL 246 +F+ KA KL Sbjct: 241 TSFIIKAIKL 250 >Q2BEH4.1 Q2BEH4_9BACI Putative uncharacterized protein Length = 249 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 104/248 (41%), Positives = 142/248 (57%), Gaps = 7/248 (2%) Query: 3 KNAIHKTNSSFWDTKGTEILGATALPLYGAFVS-EEQCRLFGDIAGKKLLEIGCGSGQSL 61 K I + N W+ G LP YG E++ L GD AGKK+L+IGCGSG SL Sbjct: 2 KTEILEKNKESWNLSAERFFGRNPLPEYGPLAPVEDELNLLGDPAGKKVLDIGCGSGHSL 61 Query: 62 QYMGERKAAELWGTDISEKQIEKTGQLLKSCGLSATLICSPMEEECGIPEDYFDFVYSVY 121 YM R AAELWG D+S KQI+ Q+L L SPME + G+P+ YFD VYS+Y Sbjct: 62 LYMDGRGAAELWGIDLSPKQIQTAQQVLGGAAAPVRLFESPMENDPGLPDQYFDIVYSIY 121 Query: 122 AIGWTTDLEATFGRIASYLKKDGIFIFSWSHPIHKCVGAENNMLVFKKSYFDESWYSVXX 181 A+GWTT LE T G I +LK G FIFSW HP + +++ ++ K Y +E Y+ Sbjct: 122 ALGWTTSLEETLGNIHRFLKPGGTFIFSWEHPFFSRIRCKDSSIIIDKPYHEEGIYNHEG 181 Query: 182 XXXXXXXXDRKLSTYVNALSKAGFVIEQMVEE---SDEEIMQSRNDNSDFA-KKAKMLPV 237 K+STY+NAL GF IE+++EE S+E+ + R+ N ++ +KA+ LP Sbjct: 182 WNTPAFMQQYKVSTYINALVSQGFKIERVIEEACLSEED--RKRHSNRWYSYEKAQFLPT 239 Query: 238 TFVFKARK 245 T + K+ K Sbjct: 240 TIIIKSTK 247 >C3HL45.1 C3HL45_BACTU UbiE/COQ5 methyltransferase Length = 251 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 107/254 (42%), Positives = 143/254 (56%), Gaps = 12/254 (4%) Query: 1 MDKNAIHKTNSSFWDTKGTEILGATALPLYGAFV-SEEQCRLFGDIAGKKLLEIGCGSGQ 59 M+ + N WDT LP YG + SE++ LF I GKK+L+IGCGSG Sbjct: 1 MEGTQMLSLNKKCWDTVAPYFFQVDCLPKYGPYTASEDEIHLFDSIKGKKVLDIGCGSGH 60 Query: 60 SLQYMGERKAAELWGTDISEKQIEKTGQLLKSCGLSATLICSPMEEECGIPEDYFDFVYS 119 SLQYM ER A ELWG D+S QIE + L+S + LIC MEEE IP+ YFD VYS Sbjct: 61 SLQYMAERGAEELWGLDLSSTQIETAHETLQS--WNPKLICGAMEEERDIPKGYFDIVYS 118 Query: 120 VYAIGWTTDLEATFGRIASYLKKDGIFIFSWSHPIHKCVGAENNMLVFKKSYFDE---SW 176 +YA+GWT+DL T I SY+K +G FIFSW HP++ + + F SY +E ++ Sbjct: 119 IYALGWTSDLRKTLELIYSYVKPEGSFIFSWEHPVYSNLMYGTEEIAFSSSYHEETPITF 178 Query: 177 YSVXXXXXXXXXXDRKLSTYVNALSKAGFVIEQMVEES-----DEEIMQSRNDNSDFAKK 231 + RK+STY+N L++ GF IE++ E DEE+ + K Sbjct: 179 ETFKGEDVQATLYKRKMSTYINELNRVGFTIERIEEPEPSSSFDEELAEPSTKYYSL-HK 237 Query: 232 AKMLPVTFVFKARK 245 A+M+P TF+ KARK Sbjct: 238 ARMVPTTFIIKARK 251 >C1ELM4.1 C1ELM4_BACC3 Putative uncharacterized protein Length = 251 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 107/254 (42%), Positives = 143/254 (56%), Gaps = 12/254 (4%) Query: 1 MDKNAIHKTNSSFWDTKGTEILGATALPLYGAFV-SEEQCRLFGDIAGKKLLEIGCGSGQ 59 M+ + N WDT LP YG + SE++ LF I GKK+L+IGCGSG Sbjct: 1 MEGTQMLSLNKKCWDTVAPYFFQVDCLPKYGPYTASEDEIHLFDSIKGKKVLDIGCGSGH 60 Query: 60 SLQYMGERKAAELWGTDISEKQIEKTGQLLKSCGLSATLICSPMEEECGIPEDYFDFVYS 119 SLQYM ER A ELWG D+S QIE + L+S + LIC MEEE IP+ YFD VYS Sbjct: 61 SLQYMAERGAEELWGLDLSSTQIETAHETLQS--WNPKLICGAMEEERDIPKGYFDIVYS 118 Query: 120 VYAIGWTTDLEATFGRIASYLKKDGIFIFSWSHPIHKCVGAENNMLVFKKSYFDES---W 176 +YA+GWT+DL T I SY+K +G FIFSW HP++ + + F SY +E+ + Sbjct: 119 IYALGWTSDLRKTLELIYSYVKPEGSFIFSWEHPVYSNLMYGTEEIAFSSSYHEETPIMF 178 Query: 177 YSVXXXXXXXXXXDRKLSTYVNALSKAGFVIEQMVEES-----DEEIMQSRNDNSDFAKK 231 + RK+STY+N L++ GF IE++ E DEE+ + K Sbjct: 179 ETFKGEDVQATLYKRKMSTYINELNRVGFTIERIEEPEPSSSFDEELAEPSTKYYSL-HK 237 Query: 232 AKMLPVTFVFKARK 245 A+M+P TF+ KARK Sbjct: 238 ARMVPTTFIIKARK 251 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,360,036,740 Number of extensions: 53137986 Number of successful extensions: 132143 Number of sequences better than 1.0e-05: 406 Number of HSP's gapped: 132320 Number of HSP's successfully gapped: 406 Length of query: 246 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 114 Effective length of database: 1,817,122,223 Effective search space: 207151933422 Effective search space used: 207151933422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)