BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0007.p (180 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHM8.1 B3KHM8_9BACI Undecaprenol kinase EC=3.6.1.27 207 4e-52 B1DF22.1 B1DF22_9BACL Undecaprenol kinase EC=3.6.1.27 141 2e-32 C2SYB4.1 C2SYB4_BACCE Undecaprenyl-diphosphatase 131 3e-29 Q81G27.1 UPPP2_BACCR Undecaprenyl-diphosphatase 2 EC=3.6.1.27 131 3e-29 Q3EPP6.1 Q3EPP6_BACTI Bacitracin resistance protein (Putative un... 131 3e-29 >B3KHM8.1 B3KHM8_9BACI Undecaprenol kinase EC=3.6.1.27 Length = 267 Score = 207 bits (526), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 107/148 (72%), Positives = 112/148 (75%) Query: 15 FKDIIKSRLFGPTPVLIGLVAGGLLMILAARSRKTNTADTIDGINYKQAFGIGLFQCLAL 74 FKD IKS+LFGPTPVLIGLVAGGLLMI+AARSR+T TADT+DGINYKQAFGIGLFQCLAL Sbjct: 102 FKDTIKSQLFGPTPVLIGLVAGGLLMIIAARSRRTETADTMDGINYKQAFGIGLFQCLAL 161 Query: 75 WPGFSRXXXXXXXXXXXXXXQKAAADFTFLISVPVMFGAXXXXXXXXXXXXXXXXXXXML 134 WPGFSR QKAAADFTFLISVPVMFGA M+ Sbjct: 162 WPGFSRSGSTISGGLLLGTSQKAAADFTFLISVPVMFGASLLDLYDSRDLLNSEDFFLMI 221 Query: 135 IGFTTSFLVAMIAVVTFIKLIKRLRLEW 162 IGFTTSFLVAMIAV TFIKLIKRLRLEW Sbjct: 222 IGFTTSFLVAMIAVATFIKLIKRLRLEW 249 >B1DF22.1 B1DF22_9BACL Undecaprenol kinase EC=3.6.1.27 Length = 262 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 75/148 (50%), Positives = 91/148 (61%) Query: 15 FKDIIKSRLFGPTPVLIGLVAGGLLMILAARSRKTNTADTIDGINYKQAFGIGLFQCLAL 74 F IK LF P VLIGLVAGG+LMI+A R ++ TA+ +D I YKQAF IG+FQ LAL Sbjct: 98 FHGFIKDYLFSPETVLIGLVAGGILMIVADRIKRKVTAEELDDITYKQAFAIGMFQVLAL 157 Query: 75 WPGFSRXXXXXXXXXXXXXXQKAAADFTFLISVPVMFGAXXXXXXXXXXXXXXXXXXXML 134 WPGFSR QKAAA+FTF++SVP+M GA + Sbjct: 158 WPGFSRSGSTISGGMFFGASQKAAAEFTFMVSVPIMAGASGIDLIKSREFLTASDAPLFI 217 Query: 135 IGFTTSFLVAMIAVVTFIKLIKRLRLEW 162 IGF +F+VAMIA+VTF+ LIKRL L W Sbjct: 218 IGFVAAFIVAMIAIVTFLNLIKRLSLSW 245 >C2SYB4.1 C2SYB4_BACCE Undecaprenyl-diphosphatase Length = 263 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/146 (45%), Positives = 90/146 (61%) Query: 15 FKDIIKSRLFGPTPVLIGLVAGGLLMILAARSRKTNTADTIDGINYKQAFGIGLFQCLAL 74 F IK LFGP PV+I LVAGG+LMI+A + K +TA T+D I YKQAF IG+FQCLAL Sbjct: 99 FHSTIKEGLFGPGPVVISLVAGGILMIVAEKFSKPSTARTLDEITYKQAFTIGMFQCLAL 158 Query: 75 WPGFSRXXXXXXXXXXXXXXQKAAADFTFLISVPVMFGAXXXXXXXXXXXXXXXXXXXML 134 WPGFSR AAA++TF+++VP+M A + Sbjct: 159 WPGFSRSGSTISGGLLARVSHTAAAEYTFILAVPMMVAASGLDLIKSWDVLSSADITLFV 218 Query: 135 IGFTTSFLVAMIAVVTFIKLIKRLRL 160 GF T+F+VAM+A+V+F+KL+ R++L Sbjct: 219 TGFVTAFVVAMLAIVSFLKLLSRVKL 244 >Q81G27.1 UPPP2_BACCR Undecaprenyl-diphosphatase 2 EC=3.6.1.27 Length = 263 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/146 (45%), Positives = 90/146 (61%) Query: 15 FKDIIKSRLFGPTPVLIGLVAGGLLMILAARSRKTNTADTIDGINYKQAFGIGLFQCLAL 74 F IK LFGP PV+I LVAGG+LMI+A + K +TA T+D I YKQAF IG+FQCLAL Sbjct: 99 FHSTIKEGLFGPGPVVISLVAGGILMIVAEKFSKPSTARTLDEITYKQAFTIGMFQCLAL 158 Query: 75 WPGFSRXXXXXXXXXXXXXXQKAAADFTFLISVPVMFGAXXXXXXXXXXXXXXXXXXXML 134 WPGFSR AAA++TF+++VP+M A + Sbjct: 159 WPGFSRSGSTISGGLLARVSHTAAAEYTFILAVPMMVAASGLDLIKSWDVLSSADITLFV 218 Query: 135 IGFTTSFLVAMIAVVTFIKLIKRLRL 160 GF T+F+VAM+A+V+F+KL+ R++L Sbjct: 219 TGFVTAFVVAMLAIVSFLKLLSRVKL 244 >Q3EPP6.1 Q3EPP6_BACTI Bacitracin resistance protein (Putative undecaprenol kinase) EC=2.7.1.66 Length = 254 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 67/146 (45%), Positives = 90/146 (61%) Query: 15 FKDIIKSRLFGPTPVLIGLVAGGLLMILAARSRKTNTADTIDGINYKQAFGIGLFQCLAL 74 F IK LFGP PV+I LVAGG+LMI+A + K +TA T+D I YKQAF IG+FQCLAL Sbjct: 90 FHSTIKEVLFGPGPVVISLVAGGILMIVAEKFSKPSTARTLDEITYKQAFTIGMFQCLAL 149 Query: 75 WPGFSRXXXXXXXXXXXXXXQKAAADFTFLISVPVMFGAXXXXXXXXXXXXXXXXXXXML 134 WPGFSR AAA++TF+++VP+M A + Sbjct: 150 WPGFSRSGSTISGGLLARVSHTAAAEYTFILAVPMMVAASGLDLIKSWDVLSSADITLFV 209 Query: 135 IGFTTSFLVAMIAVVTFIKLIKRLRL 160 GF T+F+VAM+A+V+F+KL+ R++L Sbjct: 210 TGFVTAFVVAMLAIVSFLKLLSRVKL 235 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.146 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 615,764,591 Number of extensions: 16789101 Number of successful extensions: 73726 Number of sequences better than 1.0e-05: 836 Number of HSP's gapped: 72655 Number of HSP's successfully gapped: 836 Length of query: 180 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 53 Effective length of database: 1,864,227,298 Effective search space: 98804046794 Effective search space used: 98804046794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 126 (53.1 bits)