BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0006.p (283 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q0B072.1 Q0B072_SYNWW Putative uncharacterized protein 305 4e-81 C0GCB1.1 C0GCB1_9FIRM Putative uncharacterized protein 157 7e-37 B8CZQ1.1 B8CZQ1_HALOH Putative uncharacterized protein 131 7e-29 C5CGA9.1 C5CGA9_9THEM Putative uncharacterized protein 124 7e-27 A4CHP3.1 A4CHP3_9FLAO Putative uncharacterized protein 123 2e-26 >Q0B072.1 Q0B072_SYNWW Putative uncharacterized protein Length = 286 Score = 305 bits (780), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 140/259 (54%), Positives = 185/259 (71%) Query: 18 FFHIPYSRTKAEFLRLADNGLSAAAASNDVFTSEDWKALPSPVQKYFETSGWTGTPKMSS 77 +F +PYS TKAEF +L ++ + TSED LP PVQK+F+ G+ G KMS+ Sbjct: 24 WFIVPYSPTKAEFAKLTSYQMTKTMTQGGIITSEDIAELPLPVQKHFQYCGYIGKSKMSN 83 Query: 78 MKAVFKGVDFILSPKKPAIQIDYTQYNFSQRPARIALIETSMYGIPFQGLDTYVEGKGSM 137 M F VDF+L+P KP ++I YTQYNF P R A I TS+YGIPF+G+D Y G GSM Sbjct: 84 MNVHFNDVDFVLTPDKPKLKIKYTQYNFVAEPERFACINTSLYGIPFEGIDAYQNGAGSM 143 Query: 138 KGVLAKLFTLFNQQGREMDQACLVTFLSESLLLPSAAIQSCITWEPIDDTHARAVIACYG 197 KGV+AK FTLF+Q+G MDQA LVT L+ESLLLP+ A+Q I+WE ID+THA+AVI YG Sbjct: 144 KGVIAKTFTLFDQKGEAMDQASLVTCLAESLLLPTLALQEYISWEEIDETHAQAVINYYG 203 Query: 198 ITAGGIFSFNDNGECLSFTTDDRTAVGMDGSKQRVRWSALMKDYKQIDGVRQPTRLQAVW 257 I+A GIF+F+DNG FTT+DR G+ Q+V+WSA+ DY+++DG++ P+ L+AVW Sbjct: 204 ISASGIFTFDDNGAMTRFTTNDREYTDTKGNSQKVKWSAVCGDYEEVDGIKYPSNLKAVW 263 Query: 258 HYDSGDLVYFDSRNFRVEY 276 H ++GDLVYFD R+ V+Y Sbjct: 264 HLETGDLVYFDGRDITVKY 282 >C0GCB1.1 C0GCB1_9FIRM Putative uncharacterized protein Length = 256 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 134/238 (56%), Gaps = 2/238 (0%) Query: 43 ASNDVFTSEDWKALPSPVQKYFETSGWTGTPKMSSMKAVFKGVDFILSPKKPAIQIDYTQ 102 S+++F+ D +LP PVQKYF+ G+ G PK+ + ++K LSP+K +++ Q Sbjct: 20 TSSEIFSESDIASLPEPVQKYFKVCGYIGKPKIFNADVIWKESFIKLSPEKGWTKLETKQ 79 Query: 103 YNFSQRPARIALIETSMYGIPFQGLDTYVEGKGSMKGVLAKLFTLFNQQGREMDQACLVT 162 +N P RIA ++ +P Q D Y +G+G + G L L + N +G+E Q+ L+T Sbjct: 80 FNSVIEPVRIAYMKA--LSMPLQVRDIYRKGQGQVYGKLFNLIPVVNAKGKETSQSALIT 137 Query: 163 FLSESLLLPSAAIQSCITWEPIDDTHARAVIACYGITAGGIFSFNDNGECLSFTTDDRTA 222 SE L +PS ++Q+ I W+PID A+A I G F F++ G+ + F T+DR Sbjct: 138 LFSEILFIPSYSLQNYIKWKPIDSLTAKARFIHKDIDVTGTFYFDEEGKFIRFETNDRFY 197 Query: 223 VGMDGSKQRVRWSALMKDYKQIDGVRQPTRLQAVWHYDSGDLVYFDSRNFRVEYSYRM 280 G + R+SA+ +YK+ DG++ P++++ +WH ++GD YF + Y+ R Sbjct: 198 NEKGGKFVKKRFSAVADNYKEKDGLKIPSKVRIIWHLENGDYEYFKGEIDDIIYNVRF 255 >B8CZQ1.1 B8CZQ1_HALOH Putative uncharacterized protein Length = 283 Score = 131 bits (329), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 129/237 (54%), Gaps = 7/237 (2%) Query: 48 FTSEDWKALPSPVQKYFETSGWTGTPKMSSMKAVFKGVDFILSPK-KPAIQIDYTQYNFS 106 + K+LP PVQK+ SG G+ K+ S++ +G+ I + K +P + QY Sbjct: 51 INEHELKSLPEPVQKWLRYSGVNGSKKIYSVRLKQEGM--IRTEKDQPWMSARAEQYFTV 108 Query: 107 QRPARIALIETSMYG-IPFQGLDTYVEGKGSMKGVLAKLFTLFNQQGREMDQACLVTFLS 165 +P + ++ M + F G D Y +GKG+M L L + N +G+E+DQ L+ +L Sbjct: 109 DKPGFVWKVKVRMAPFLYFNGRDRYYKGKGNMLIKLMALVPVVNAEGKEIDQGTLLRYLG 168 Query: 166 ESLLLPSAAIQSCITWEPIDDTHARAVIACYGITAGGIFSFNDNGECLSFTTDDRTAVGM 225 E + P AA+ + I WE +D ARA+++ G++A IF+FN GE +S+T + + Sbjct: 169 EIVWFPQAALSNYIEWEEVDSNSARAIMSYGGLSASAIFNFNHKGEVISYTC--KRYMSR 226 Query: 226 DGSKQRVRWSALMKDYKQIDGVRQPTRLQAVWHYDSGDLVYFDSRNFRVEYSYRMTI 282 G + L++DYK G + PTR +A+W D+GD Y+ + +EY+ ++TI Sbjct: 227 AGGATLEDYLVLVEDYKDRGGFKIPTRAEAIWRLDTGDFSYYKFKVTDIEYN-KLTI 282 >C5CGA9.1 C5CGA9_9THEM Putative uncharacterized protein Length = 285 Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 12/248 (4%) Query: 33 LADNGLSAAAASNDVFTSEDWKALPSPVQKYFETSGWTGTPKMSSMKAVFKGVDFILSPK 92 ADN + S+ + D + LP PVQK+ + S K+ +++ K + L + Sbjct: 42 FADN----SEDSDGIIQKSDLEKLPIPVQKWLKYSQVVEKEKIRAVRLKQKAI-MRLKEE 96 Query: 93 KPAIQIDYTQYNFSQRPARIALIETSMYGIPF---QGLDTYVEGKGSMKGVLAKLFTLFN 149 + + ++ QY P I + + P G D Y +GKG+M + L + + Sbjct: 97 QSWMPVEAEQYFTIDEPGFIW--KARIKAAPLFYIVGRDKYYKGKGNMLIKVLSLIPVAD 154 Query: 150 QQGREMDQACLVTFLSESLLLPSAAIQSCITWEPIDDTHARAVIACYGITAGGIFSFNDN 209 +G+EMDQ L+ +L+E + P+AA+ S ITWE ID A+ ++ GITA G+F+FND Sbjct: 155 SKGKEMDQGTLLRYLAEMVWFPTAALSSYITWEEIDTNSAKTTMSYGGITASGVFTFNDK 214 Query: 210 GECLSFTTDDRTAVGMDGSKQRVRWSALMKDYKQIDGVRQPTRLQAVWHYDSGDLVYFDS 269 GE ++F + DG WS M +Y++ DG++ PT + W ++GD +F Sbjct: 215 GEVINFVAERYRE--HDGQYSLETWSVTMGNYEEFDGIKIPTMGEVTWKLETGDFTWFKF 272 Query: 270 RNFRVEYS 277 +EY+ Sbjct: 273 EVTEIEYN 280 >A4CHP3.1 A4CHP3_9FLAO Putative uncharacterized protein Length = 366 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 6/240 (2%) Query: 39 SAAAASNDVFTSEDWKALPSPVQKYFETSGWTGTPKMSSMKAVFKGVDFILSPKKPAIQI 98 SAA + ED LP+PVQKY G G ++ + VF+G + + Sbjct: 123 SAAPVETRIIREEDLDHLPAPVQKYLRYVGVVGKTRVQDFRIVFEGD--MRGRDQDWFPF 180 Query: 99 DYTQYNFSQRPARIALIETSMYGIPFQGLDTYVEGKGSMKGVLAKLFTLFNQQGREMDQA 158 Q+NF P R+ ++ + G+P G Y G SM+ + LF + + + Sbjct: 181 TSEQFNFIPSPTRLFFMKARVKGLPAAGYHRYKNGNASMRVKVLSLFPVVHIDDPALYAT 240 Query: 159 CLVTFLSE-SLLLPSAAIQSCITWEPIDDTHARAVIACYGITAGGIFSFNDNGECLSFTT 217 VTF ++ L P+ I ITWEPID ARA G + FND G+ ++F + Sbjct: 241 ETVTFFNDLCLFAPAGLIDRRITWEPIDPQTARATFTTRGTSISAELYFNDQGQLVNFYS 300 Query: 218 DDRTAVGMDGSKQRVRWSALMKDYKQIDGVRQPTRLQAVWHYDSGDLVYFDSRNFRVEYS 277 +DR A+ + +S +KDY++I+G+ PT +AVWHY G LVY R V+Y+ Sbjct: 301 EDRIAI---DEMKTFPFSTPVKDYQKINGLNLPTYGEAVWHYPDGALVYGKFRLQSVDYN 357 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,577,828,040 Number of extensions: 63214359 Number of successful extensions: 134580 Number of sequences better than 1.0e-05: 28 Number of HSP's gapped: 134536 Number of HSP's successfully gapped: 28 Length of query: 283 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 149 Effective length of database: 1,798,280,193 Effective search space: 267943748757 Effective search space used: 267943748757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)