BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0005.p (154 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q0B074.1 Q0B074_SYNWW Putative uncharacterized protein 141 2e-32 A7FU40.1 A7FU40_CLOB1 Transcriptional regulator, MarR family 95 2e-18 A5I204.1 A5I204_CLOBH Transcriptional regulator, MarR family 95 2e-18 C1FMZ9.1 C1FMZ9_CLOBJ Transcriptional regulator, MarR family 94 3e-18 B1IL63.1 B1IL63_CLOBK Transcriptional regulator, MarR family 94 4e-18 >Q0B074.1 Q0B074_SYNWW Putative uncharacterized protein Length = 151 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 2/151 (1%) Query: 1 MEEKEQQAYILGAVLTLANRLQVLGDQLDDQMTMKQWLLIAVILKSGSPAPTLSDVSAMI 60 M + EQ+AYI G + L+N+LQV+GD+ D +T+KQWLL+ I K P PT+S+V+ + Sbjct: 1 MNQLEQKAYIFGTIFALSNKLQVIGDKFDKNITIKQWLLLVSISKFEEP-PTISEVANYV 59 Query: 61 GSSRQNVKKMALLLEQQGFVALTKDSRDARVLRVQLTDKCRVYFSGRSGREDQFIKALFQ 120 G SRQN K+MA +L+++GFV + KD DAR LR+ T KC YF+GR RE +F++ +F Sbjct: 60 GYSRQNAKRMAAVLQERGFVTIAKDENDARALRIARTPKCIEYFAGRDQRELEFLEEIFN 119 Query: 121 SFDAEXXXXXXXXXXXXXENIARM-ETDASD 150 FDAE +NIA M + DA+D Sbjct: 120 GFDAELTAGFYQGLSRIEKNIATMIDNDAND 150 >A7FU40.1 A7FU40_CLOB1 Transcriptional regulator, MarR family Length = 155 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 79/142 (55%) Query: 5 EQQAYILGAVLTLANRLQVLGDQLDDQMTMKQWLLIAVILKSGSPAPTLSDVSAMIGSSR 64 +++ ++ G + L+N+L+ LG+ ++T KQW + +++ PTLS+++ IG+S Sbjct: 11 DKRYHVFGMLFLLSNKLEALGNNFLGELTTKQWFFMLILMNFFKEPPTLSELALEIGTSH 70 Query: 65 QNVKKMALLLEQQGFVALTKDSRDARVLRVQLTDKCRVYFSGRSGREDQFIKALFQSFDA 124 QN K++A+ LE++GF+ + KD++D RVLR+ T+K Y R ++ FI+ F Sbjct: 71 QNAKQIAIKLEEKGFLVVKKDTKDKRVLRLTPTNKIEKYVKLRKDKDHFFIEKFFNVLTK 130 Query: 125 EXXXXXXXXXXXXXENIARMET 146 E +NI +E Sbjct: 131 EEVKNIYESFTKLLDNIKVIEN 152 >A5I204.1 A5I204_CLOBH Transcriptional regulator, MarR family Length = 155 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 79/142 (55%) Query: 5 EQQAYILGAVLTLANRLQVLGDQLDDQMTMKQWLLIAVILKSGSPAPTLSDVSAMIGSSR 64 +++ ++ G + L+N+L+ LG+ ++T KQW + +++ PTLS+++ IG+S Sbjct: 11 DKRYHVFGMLFLLSNKLEALGNNFLGELTTKQWFFMLILMNFFKEPPTLSELALEIGTSH 70 Query: 65 QNVKKMALLLEQQGFVALTKDSRDARVLRVQLTDKCRVYFSGRSGREDQFIKALFQSFDA 124 QN K++A+ LE++GF+ + KD++D RVLR+ T+K Y R ++ FI+ F Sbjct: 71 QNAKQIAIKLEEKGFLVVKKDTKDKRVLRLTPTNKIEKYVKLRKDKDHFFIEKFFNVLTK 130 Query: 125 EXXXXXXXXXXXXXENIARMET 146 E +NI +E Sbjct: 131 EEVKNIYESFTKLLDNIKVIEN 152 >C1FMZ9.1 C1FMZ9_CLOBJ Transcriptional regulator, MarR family Length = 159 Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 81/147 (55%) Query: 5 EQQAYILGAVLTLANRLQVLGDQLDDQMTMKQWLLIAVILKSGSPAPTLSDVSAMIGSSR 64 +++ ++ G + L+N+L+ LG+ ++T KQW + +++ PTLS+++ +G+S Sbjct: 11 DKRYHVFGMLFLLSNKLEALGNNFLGELTTKQWFFMLILMNFFKEPPTLSELALEMGTSH 70 Query: 65 QNVKKMALLLEQQGFVALTKDSRDARVLRVQLTDKCRVYFSGRSGREDQFIKALFQSFDA 124 QN K++A+ LE++GF+ + KD++D RVLR+ T+K Y R ++ FI+ F Sbjct: 71 QNAKQIAIKLEEKGFLVVKKDTKDKRVLRLTPTNKIEKYVKLRKDKDHFFIEKFFNVLTK 130 Query: 125 EXXXXXXXXXXXXXENIARMETDASDR 151 E +NI +E + R Sbjct: 131 EEVKNIYGSFTKLLDNIKVIENEFLKR 157 >B1IL63.1 B1IL63_CLOBK Transcriptional regulator, MarR family Length = 155 Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 80/143 (55%) Query: 5 EQQAYILGAVLTLANRLQVLGDQLDDQMTMKQWLLIAVILKSGSPAPTLSDVSAMIGSSR 64 +++ ++ G + L+N+L+ LG+ ++T KQW + +++ PTLS+++ +G+S Sbjct: 11 DKRYHVFGMLFLLSNKLEALGNNFLGELTTKQWFFMLILMNFFKEPPTLSELALEMGTSH 70 Query: 65 QNVKKMALLLEQQGFVALTKDSRDARVLRVQLTDKCRVYFSGRSGREDQFIKALFQSFDA 124 QN K++A+ LE++GF+ + KD++D RVLR+ T+K Y R ++ FI+ F Sbjct: 71 QNAKQIAIKLEEKGFLVVKKDTKDKRVLRLTPTNKIEKYVKLRKDKDHFFIEKFFNVLTK 130 Query: 125 EXXXXXXXXXXXXXENIARMETD 147 E +NI +E + Sbjct: 131 EEVKNIYGSFTKLLDNIKVIENE 153 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.131 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 690,382,347 Number of extensions: 21977340 Number of successful extensions: 56351 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 56359 Number of HSP's successfully gapped: 24 Length of query: 154 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 38 Effective length of database: 1,967,858,463 Effective search space: 74778621594 Effective search space used: 74778621594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)