BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0003.p (267 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KC45.1 B3KC45_9BACI ABC-2 type transporter 474 e-132 B1D8B1.1 B1D8B1_9BACL ABC-2 type transporter 446 e-123 Q5L1I6.1 Q5L1I6_GEOKA ABC transporter (Permease) 419 e-115 C3J2X0.1 C3J2X0_9BACI ABC-2 type transporter 409 e-112 B7YD54.1 B7YD54_9BACI ABC-2 type transporter 409 e-112 >B3KC45.1 B3KC45_9BACI ABC-2 type transporter Length = 271 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/267 (85%), Positives = 252/267 (94%) Query: 1 MIKPGAQRQLKNHTSFGQSVRNSLTMAYRGMLKIKRTPEQLFDVTFQPIIFTLMFTYIFG 60 MI+PG +R+LKN TSFGQ+VRNSLTMAYRG+LK++RTPEQLFDVTFQPIIFTLMFTYIFG Sbjct: 5 MIQPGTERRLKNRTSFGQTVRNSLTMAYRGLLKLRRTPEQLFDVTFQPIIFTLMFTYIFG 64 Query: 61 GAISGDVQNYLPMIIPGILVQTVITTSIVTGVQLREDMEKGVFDRFKSLPISRIAPLAGA 120 GAISGDV +YLP+IIPGILVQTVITTS+VTGVQLREDM+KGVFDRFKSLPI+RIAPLAGA Sbjct: 65 GAISGDVASYLPVIIPGILVQTVITTSVVTGVQLREDMDKGVFDRFKSLPIARIAPLAGA 124 Query: 121 LLADTVRYTIATVLTFAMGYVMGLSPEGGLGHVAMAGVLVIICSWAISWIFAFFGVIART 180 LLADT+RYTIATVLTF MGY+MG PEGGLG+VA+AG++VI+CSWAISWIFAF GVIAR+ Sbjct: 125 LLADTIRYTIATVLTFTMGYIMGYRPEGGLGYVALAGLVVILCSWAISWIFAFCGVIARS 184 Query: 181 ASSVQGISMIVLFPLTFLSNAFVPVDTMPDWLQWFVKMNPISHLVTAVRDLVNSGTMGSD 240 AS VQGISMIVLFPLTFLSNAFVPVDTMP WLQWFV +NPISHLVTAVRDL N+GT+G D Sbjct: 185 ASGVQGISMIVLFPLTFLSNAFVPVDTMPGWLQWFVNINPISHLVTAVRDLTNAGTVGWD 244 Query: 241 LVFSLAGAAVIVAIFAPITVRAYMRRT 267 L SL GAAVIVAIFAPITVRAYMRRT Sbjct: 245 LTISLVGAAVIVAIFAPITVRAYMRRT 271 >B1D8B1.1 B1D8B1_9BACL ABC-2 type transporter Length = 267 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 213/259 (82%), Positives = 244/259 (94%) Query: 9 QLKNHTSFGQSVRNSLTMAYRGMLKIKRTPEQLFDVTFQPIIFTLMFTYIFGGAISGDVQ 68 LKNHTSF Q++R+SLTMAYRG+LKI+RTPEQLFDVT QPIIFTLMFTYIFGGAISGDVQ Sbjct: 9 HLKNHTSFIQTLRHSLTMAYRGVLKIRRTPEQLFDVTLQPIIFTLMFTYIFGGAISGDVQ 68 Query: 69 NYLPMIIPGILVQTVITTSIVTGVQLREDMEKGVFDRFKSLPISRIAPLAGALLADTVRY 128 +YLP+IIPGILVQTVITTSIVTGVQLREDM+KGVFDRFKSLPI+RIAPLAGALLADT+RY Sbjct: 69 SYLPVIIPGILVQTVITTSIVTGVQLREDMDKGVFDRFKSLPIARIAPLAGALLADTIRY 128 Query: 129 TIATVLTFAMGYVMGLSPEGGLGHVAMAGVLVIICSWAISWIFAFFGVIARTASSVQGIS 188 TIATVLTF+MG++MG P+GG+G+V +A +LVI SWA+SWIFAFFGVI+RTASSVQGIS Sbjct: 129 TIATVLTFSMGFIMGYRPDGGIGNVILAALLVIFVSWAMSWIFAFFGVISRTASSVQGIS 188 Query: 189 MIVLFPLTFLSNAFVPVDTMPDWLQWFVKMNPISHLVTAVRDLVNSGTMGSDLVFSLAGA 248 M+VLFPLTF+SNAFVP DTMP WLQWFV +NP+SH+V+AVR+L NSGT+GSD+V+SL GA Sbjct: 189 MLVLFPLTFMSNAFVPADTMPKWLQWFVNINPVSHVVSAVRELTNSGTVGSDMVWSLVGA 248 Query: 249 AVIVAIFAPITVRAYMRRT 267 VIVA+FAPITVRAYMRRT Sbjct: 249 LVIVAVFAPITVRAYMRRT 267 >Q5L1I6.1 Q5L1I6_GEOKA ABC transporter (Permease) Length = 271 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 196/260 (75%), Positives = 227/260 (87%) Query: 7 QRQLKNHTSFGQSVRNSLTMAYRGMLKIKRTPEQLFDVTFQPIIFTLMFTYIFGGAISGD 66 +RQ KN TS Q+VRNSLTMAYRG+LK++RTPEQLFDVTFQPIIFTLMFTYIFGGAI+G+ Sbjct: 11 KRQQKNRTSVSQAVRNSLTMAYRGLLKVRRTPEQLFDVTFQPIIFTLMFTYIFGGAIAGN 70 Query: 67 VQNYLPMIIPGILVQTVITTSIVTGVQLREDMEKGVFDRFKSLPISRIAPLAGALLADTV 126 V NYLPMIIPGIL+QT+I S+ +GVQLR+DM+KGVFDRFKSLPI+RIAPLAGALLAD V Sbjct: 71 VHNYLPMIIPGILIQTLIGASVTSGVQLRDDMDKGVFDRFKSLPIARIAPLAGALLADVV 130 Query: 127 RYTIATVLTFAMGYVMGLSPEGGLGHVAMAGVLVIICSWAISWIFAFFGVIARTASSVQG 186 RY IAT LTF MG+++G PEGG+ VA+AGV I C+WA+SWIFAFFGVIAR A++VQG Sbjct: 131 RYVIATTLTFVMGFLIGYRPEGGIASVALAGVFAIGCAWAVSWIFAFFGVIARHAAAVQG 190 Query: 187 ISMIVLFPLTFLSNAFVPVDTMPDWLQWFVKMNPISHLVTAVRDLVNSGTMGSDLVFSLA 246 ISM+ LFPL F+SNAFVPV TMPDWLQW K+NPISH++ AVR+L N GT+G+D V SL Sbjct: 191 ISMLALFPLMFVSNAFVPVKTMPDWLQWIAKVNPISHMIAAVRELTNHGTIGTDFVLSLL 250 Query: 247 GAAVIVAIFAPITVRAYMRR 266 GAA IVAIFAPITVR YMRR Sbjct: 251 GAAAIVAIFAPITVRVYMRR 270 >C3J2X0.1 C3J2X0_9BACI ABC-2 type transporter Length = 271 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/264 (71%), Positives = 226/264 (85%) Query: 3 KPGAQRQLKNHTSFGQSVRNSLTMAYRGMLKIKRTPEQLFDVTFQPIIFTLMFTYIFGGA 62 + A RQLKN S Q+V NSLTMAYR +LK++RTPEQLFDVTFQPI+FTLMFTYIFGGA Sbjct: 7 QSAAHRQLKNRASVSQAVSNSLTMAYRSLLKVRRTPEQLFDVTFQPILFTLMFTYIFGGA 66 Query: 63 ISGDVQNYLPMIIPGILVQTVITTSIVTGVQLREDMEKGVFDRFKSLPISRIAPLAGALL 122 I+G+V +YLPMI+PGIL+QT+I S+ +GVQLR+DM+KGVFDRFKSLPI+RIAPLAG L+ Sbjct: 67 IAGNVHDYLPMIVPGILIQTLIGASVASGVQLRDDMDKGVFDRFKSLPIARIAPLAGGLV 126 Query: 123 ADTVRYTIATVLTFAMGYVMGLSPEGGLGHVAMAGVLVIICSWAISWIFAFFGVIARTAS 182 ADTVRY IATVLTFAMG+++G PEGG+ +A AGV I C+WA+SWIFAF GVIAR A+ Sbjct: 127 ADTVRYAIATVLTFAMGFLIGYRPEGGIASMAFAGVFAIGCAWAVSWIFAFCGVIARHAA 186 Query: 183 SVQGISMIVLFPLTFLSNAFVPVDTMPDWLQWFVKMNPISHLVTAVRDLVNSGTMGSDLV 242 +VQGISM+ LFPL F+SNAFVP+ TMPDWLQW K+NPISH++ AVR+L N GT+G+D V Sbjct: 187 AVQGISMMALFPLMFVSNAFVPIKTMPDWLQWVAKVNPISHMIAAVRELTNHGTIGTDFV 246 Query: 243 FSLAGAAVIVAIFAPITVRAYMRR 266 SL GAA IVAIFAPITVR YMRR Sbjct: 247 VSLLGAAAIVAIFAPITVRVYMRR 270 >B7YD54.1 B7YD54_9BACI ABC-2 type transporter Length = 271 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/264 (71%), Positives = 226/264 (85%) Query: 3 KPGAQRQLKNHTSFGQSVRNSLTMAYRGMLKIKRTPEQLFDVTFQPIIFTLMFTYIFGGA 62 + A RQLKN S Q+V NSLTMAYR +LK++RTPEQLFDVTFQPI+FTLMFTYIFGGA Sbjct: 7 QSAAHRQLKNRASVSQAVSNSLTMAYRSLLKVRRTPEQLFDVTFQPILFTLMFTYIFGGA 66 Query: 63 ISGDVQNYLPMIIPGILVQTVITTSIVTGVQLREDMEKGVFDRFKSLPISRIAPLAGALL 122 I+G+V +YLPMI+PGIL+QT+I S+ +GVQLR+DM+KGVFDRFKSLPI+RIAPLAG L+ Sbjct: 67 IAGNVHDYLPMIVPGILIQTLIGASVASGVQLRDDMDKGVFDRFKSLPIARIAPLAGGLV 126 Query: 123 ADTVRYTIATVLTFAMGYVMGLSPEGGLGHVAMAGVLVIICSWAISWIFAFFGVIARTAS 182 ADTVRY IATVLTFAMG+++G PEGG+ +A AGV I C+WA+SWIFAF GVIAR A+ Sbjct: 127 ADTVRYAIATVLTFAMGFLIGYRPEGGIASMAFAGVFAIGCAWAVSWIFAFCGVIARHAA 186 Query: 183 SVQGISMIVLFPLTFLSNAFVPVDTMPDWLQWFVKMNPISHLVTAVRDLVNSGTMGSDLV 242 +VQGISM+ LFPL F+SNAFVP+ TMPDWLQW K+NPISH++ AVR+L N GT+G+D V Sbjct: 187 AVQGISMMALFPLMFVSNAFVPIKTMPDWLQWVAKVNPISHMIAAVRELTNHGTIGTDFV 246 Query: 243 FSLAGAAVIVAIFAPITVRAYMRR 266 SL GAA IVAIFAPITVR YMRR Sbjct: 247 VSLLGAAAIVAIFAPITVRVYMRR 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,483,615,056 Number of extensions: 59406368 Number of successful extensions: 218740 Number of sequences better than 1.0e-05: 1218 Number of HSP's gapped: 218805 Number of HSP's successfully gapped: 1219 Length of query: 267 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 134 Effective length of database: 1,807,701,208 Effective search space: 242231961872 Effective search space used: 242231961872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)