BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0567.0002.p
         (88 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K3H3.1 B3K3H3_9BACI Putative uncharacterized protein                 84   3e-15

>B3K3H3.1 B3K3H3_9BACI Putative uncharacterized protein
          Length = 88

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 57/85 (67%)

Query: 3  SILEDMYYGNLRPDESIKSADPRAKQLHQEVMMLMDNYQKKLAAAEFEEIERLLDLVGEL 62
          S LE +YYGNL P E   S DP+ +QL +++   MD ++K+L+  EF E+E LLDL  ++
Sbjct: 3  SFLESLYYGNLNPVEKAVSNDPQYRQLSRQISESMDAWKKRLSDDEFHELEELLDLYRQV 62

Query: 63 NSMHAAAAFVQGYRIGALMIMEVYC 87
            +  AA+F  G+R+GA MI+EVY 
Sbjct: 63 QGLEMAASFTDGFRLGATMIIEVYS 87


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 462,504,059
Number of extensions: 13851157
Number of successful extensions: 49880
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 49882
Number of HSP's successfully gapped: 1
Length of query: 88
Length of database: 3,060,696,203
Length adjustment: 58
Effective length of query: 30
Effective length of database: 2,514,277,333
Effective search space: 75428319990
Effective search space used: 75428319990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)