BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0567.0001.p (189 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB96.1 B3KB96_9BACI Putative uncharacterized protein 211 4e-53 B1DDG9.1 B1DDG9_9BACL Putative uncharacterized protein 161 3e-38 B6AZP5.1 B6AZP5_9RHOB Putative uncharacterized protein 100 1e-19 A3JQV6.1 A3JQV6_9RHOB Putative uncharacterized protein 95 3e-18 Q67JK3.1 Q67JK3_SYMTH Putative uncharacterized protein 94 4e-18 >B3KB96.1 B3KB96_9BACI Putative uncharacterized protein Length = 259 Score = 211 bits (536), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 106/167 (63%), Positives = 120/167 (71%), Gaps = 1/167 (0%) Query: 4 MAVKHETELYAPLKSFFEKQGYDIKGEVRTCDLVGLRGNEEQPLIVEMKKSFNLALLLQG 63 MA+KHE ELYAPLK+FFE GY++KGEVR CDLVG++ ++PLIVE+KK+FNLALLLQG Sbjct: 1 MAIKHEAELYAPLKAFFELNGYEVKGEVRNCDLVGMKDGADEPLIVELKKTFNLALLLQG 60 Query: 64 VERLRLSPNVYLAVERVRDKKGAVNQRWGEXXXXXXXXXXXXXXXXFYKTKAPLVEVLAE 123 +ERL+L+P VYLAVE+ R KKGAVNQRW E FYKTKAP VEVL E Sbjct: 61 IERLKLTPYVYLAVEKSRAKKGAVNQRWSELTGLCGRLGLGLITVTFYKTKAPFVEVLCE 120 Query: 124 PXXXXXXXXXXXXXXXXRLLYEFRERSGDYNTGGSTRVKLVTAYREK 170 P RLLYEFRERSGDYNTGG TR KLVTAYREK Sbjct: 121 P-EMAVQKGRTAIRRKERLLYEFRERSGDYNTGGVTRAKLVTAYREK 166 >B1DDG9.1 B1DDG9_9BACL Putative uncharacterized protein Length = 279 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 86/167 (51%), Positives = 109/167 (65%), Gaps = 2/167 (1%) Query: 4 MAVKHETELYAPLKSFFEKQGYDIKGEVRTCDLVGLRGNEEQPLIVEMKKSFNLALLLQG 63 MAV E ELY+P+K+++EK G+ +K EV CDLV ++ + + ++VEMKK+FNLALLLQG Sbjct: 1 MAVNKEEELYSPIKAYYEKLGFTVKSEVLHCDLVAMKPDGSEAVVVEMKKTFNLALLLQG 60 Query: 64 VERLRLSPNVYLAVERVRDKKGAVNQRWGEXXXXXXXXXXXXXXXXFYKTKAPLVEVLAE 123 +ERLR++ +V LAVER R K GA NQR+ + +KTKAPL+E+L E Sbjct: 61 IERLRINDHVVLAVERNRKKSGAHNQRFSDITELCRMLGLGLMTVTIFKTKAPLIEMLCE 120 Query: 124 PXXXXXXXXXXXXXXXXRLLYEFRERSGDYNTGGSTRVKLVTAYREK 170 P RLL EFRERSGDYN GGST KLVTAYREK Sbjct: 121 P--GEMPKRGIRRTRQARLLREFRERSGDYNVGGSTGRKLVTAYREK 165 >B6AZP5.1 B6AZP5_9RHOB Putative uncharacterized protein Length = 237 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 84/161 (52%), Gaps = 9/161 (5%) Query: 9 ETELYAPLKSFFEKQGYDIKGEVRTCDLVGLRGNEEQPLIVEMKKSFNLALLLQGVERLR 68 ET+LY P+KSF E QGY++KGEV D++ +RG+ E PLIVE+K F+L+L QGVERL Sbjct: 8 ETDLYPPVKSFLEAQGYEVKGEVGKLDVMAMRGD-EPPLIVELKTGFSLSLFHQGVERLS 66 Query: 69 LSPNVYLAVERVRDKKGAVNQRWGEXXXXXXXXXXXXXXXXFYKTKAPLVEVLAEPXXXX 128 + VY+ V R + K G + + + + VE +P Sbjct: 67 ICDTVYICVPRPKGKAGLKSLKNNKNLCRRLGLGLLTV-----RASDNFVEAHVDP---T 118 Query: 129 XXXXXXXXXXXXRLLYEFRERSGDYNTGGSTRVKLVTAYRE 169 R L EF+ GD NTGGSTR LVTAYR+ Sbjct: 119 PYTPRKSKKKADRHLREFQRLVGDPNTGGSTRQGLVTAYRQ 159 >A3JQV6.1 A3JQV6_9RHOB Putative uncharacterized protein Length = 230 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 9/161 (5%) Query: 9 ETELYAPLKSFFEKQGYDIKGEVRTCDLVGLRGNEEQPLIVEMKKSFNLALLLQGVERLR 68 ET+LY P+K++ E QGY++KGEV D++ +RG+E PL+VE+K F LAL+ Q +ERL+ Sbjct: 6 ETDLYDPVKAYLEGQGYEVKGEVGAVDVMAVRGDEP-PLVVELKLGFTLALVHQAIERLK 64 Query: 69 LSPNVYLAVERVRDKKGAVNQRWGEXXXXXXXXXXXXXXXXFYKTKAPLVEVLAEPXXXX 128 +S VY+AV R G ++ + LVE+ +P Sbjct: 65 ISDLVYVAVPR-----GKTRAQYKALLANRKLCRMLGVGFMTVRLDTGLVEIHQDPGPYA 119 Query: 129 XXXXXXXXXXXXRLLYEFRERSGDYNTGGSTRVKLVTAYRE 169 +LL EF R GD N GG+TR +VTAYR+ Sbjct: 120 PRKSKIRKT---QLLSEFERRVGDPNKGGTTRRTIVTAYRQ 157 >Q67JK3.1 Q67JK3_SYMTH Putative uncharacterized protein Length = 220 Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 81/155 (52%), Gaps = 9/155 (5%) Query: 16 LKSFFEKQGYDIKGEVRTCDLVGLRGNEEQPLIVEMKKSFNLALLLQGVERLRLSPNVYL 75 +KS E G+ ++GEV CDL +RG++ +IVE+K++ NL LLLQ V+RLRL+ VY+ Sbjct: 1 MKSLLEGLGFTVRGEVNGCDLAAVRGDDL--VIVELKRTVNLDLLLQAVDRLRLTDLVYV 58 Query: 76 AVERVRDKKGAVNQRWGEXXXXXXXXXXXXXXXXFYKTKAPLVEVLAEPXXXXXXXXXXX 135 AVE R +G +RW + F P VL +P Sbjct: 59 AVEAPRRARG---RRWTQIQHLCRRLGLGLMVVRF-TGGGPAAAVLFDPEPWRPRPRSRQ 114 Query: 136 XXXXXRLLYEFRERSGDYNTGGSTRVKLVTAYREK 170 LL E RSGDYN GGSTR L+TAYRE+ Sbjct: 115 RAA---LLREVARRSGDYNVGGSTRSPLITAYREE 146 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 807,331,701 Number of extensions: 28182214 Number of successful extensions: 44620 Number of sequences better than 1.0e-05: 70 Number of HSP's gapped: 44538 Number of HSP's successfully gapped: 70 Length of query: 189 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 61 Effective length of database: 1,854,806,283 Effective search space: 113143183263 Effective search space used: 113143183263 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)