BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0034.p (228 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6V4.1 B3K6V4_9BACI UbiD family decarboxylase 353 6e-96 Q9K605.1 Q9K605_BACHD BH3930 protein 329 1e-88 C0ZEE1.1 C0ZEE1_BREBN Putative uncharacterized protein 328 2e-88 A8VR28.1 A8VR28_9BACI Putative uncharacterized protein 298 2e-79 Q5WAQ6.1 Q5WAQ6_BACSK 3-polyprenyl-4-hydroxybenzoate decarboxylase 292 2e-77 >B3K6V4.1 B3K6V4_9BACI UbiD family decarboxylase Length = 612 Score = 353 bits (906), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 164/195 (84%), Positives = 184/195 (94%) Query: 1 MEECIVDLEKHGHLVRIQEEVDPNLEMAAIHLKVYEAGGPALLFEKVKGSRYRAVSNLFG 60 +EECIVDLE+HGHLVRIQEEVDP+LEMAAIH+KVYEAGGPALLFE VKGSR+RAVSNLFG Sbjct: 6 LEECIVDLERHGHLVRIQEEVDPHLEMAAIHMKVYEAGGPALLFENVKGSRFRAVSNLFG 65 Query: 61 TIERSKFIFRDTWESSQDVIALRSDPMKALKQPFKYIGTGLAARKALPLKKGNGIPAGFE 120 TIERSKFIFR+T+ES+QDVIALR+DPMKALK PFKYIGTGLAA+ ALP+KK +P GF+ Sbjct: 66 TIERSKFIFRETFESTQDVIALRNDPMKALKNPFKYIGTGLAAKSALPIKKTGALPPGFQ 125 Query: 121 EIQISDLPQIKHWPGDGGAFVTLPQVYSEDPDKPGIMNSNLGMYRIQLSGNEYEINKEVG 180 EIQISDLP IKHW DGGAFVTLPQVYSEDP+KPG+MNSNLGMYR+QL+GN+YE+NKEVG Sbjct: 126 EIQISDLPLIKHWKDDGGAFVTLPQVYSEDPEKPGVMNSNLGMYRVQLTGNDYELNKEVG 185 Query: 181 VHYQIHRGIGIHQTK 195 +HYQIHRGIGIHQ K Sbjct: 186 IHYQIHRGIGIHQAK 200 >Q9K605.1 Q9K605_BACHD BH3930 protein Length = 610 Score = 329 bits (843), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 153/195 (78%), Positives = 177/195 (90%), Gaps = 1/195 (0%) Query: 1 MEECIVDLEKHGHLVRIQEEVDPNLEMAAIHLKVYEAGGPALLFEKVKGSRYRAVSNLFG 60 ++ECI DLEKHGHL+RI+EEVDP LEMAAIHLKVYEAGGPALLFE VKGS Y+AVSNLFG Sbjct: 5 LQECINDLEKHGHLIRIREEVDPYLEMAAIHLKVYEAGGPALLFENVKGSNYQAVSNLFG 64 Query: 61 TIERSKFIFRDTWESSQDVIALRSDPMKALKQPFKYIGTGLAARKALPLKKGNGIPAGFE 120 T+ERSKFIFR TW+S+++V+ALR+DPM ALK PF + T LAA KALPLKK +PAGFE Sbjct: 65 TMERSKFIFRQTWQSAENVVALRNDPMSALKHPFAHARTALAASKALPLKKSR-LPAGFE 123 Query: 121 EIQISDLPQIKHWPGDGGAFVTLPQVYSEDPDKPGIMNSNLGMYRIQLSGNEYEINKEVG 180 EI ISDLP I+HWP DGGAF+TLPQVYSEDPDKPGIMN+NLGMYR+QL+GNEYE+++EVG Sbjct: 124 EITISDLPLIQHWPDDGGAFITLPQVYSEDPDKPGIMNANLGMYRVQLTGNEYELDQEVG 183 Query: 181 VHYQIHRGIGIHQTK 195 +HYQIHRGIG+HQTK Sbjct: 184 LHYQIHRGIGVHQTK 198 >C0ZEE1.1 C0ZEE1_BREBN Putative uncharacterized protein Length = 609 Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 150/195 (76%), Positives = 175/195 (89%) Query: 1 MEECIVDLEKHGHLVRIQEEVDPNLEMAAIHLKVYEAGGPALLFEKVKGSRYRAVSNLFG 60 +EECI+DLE+HGHLVRI+EEVDP LEMAAIHLKVYEAGGPALLFE VKGS++RAVSNLFG Sbjct: 5 LEECILDLERHGHLVRIREEVDPYLEMAAIHLKVYEAGGPALLFENVKGSKFRAVSNLFG 64 Query: 61 TIERSKFIFRDTWESSQDVIALRSDPMKALKQPFKYIGTGLAARKALPLKKGNGIPAGFE 120 TIERSKFIFR TW++++++IA+R+DPMKALKQPFK I G AA KALP KK +P + Sbjct: 65 TIERSKFIFRSTWQAAENIIAMRNDPMKALKQPFKNIENGFAALKALPAKKSTSMPVTAQ 124 Query: 121 EIQISDLPQIKHWPGDGGAFVTLPQVYSEDPDKPGIMNSNLGMYRIQLSGNEYEINKEVG 180 EI I+DLP I+ WP DGGAFVTLPQ+YSEDPDKPGIMNSNLGMYR+QL+GNEYE+NKE+G Sbjct: 125 EISITDLPLIQSWPMDGGAFVTLPQIYSEDPDKPGIMNSNLGMYRVQLTGNEYEVNKEIG 184 Query: 181 VHYQIHRGIGIHQTK 195 +HYQIHRGIG+HQ K Sbjct: 185 LHYQIHRGIGVHQAK 199 >A8VR28.1 A8VR28_9BACI Putative uncharacterized protein Length = 609 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 143/196 (72%), Positives = 165/196 (84%), Gaps = 1/196 (0%) Query: 1 MEECIVDLEKHGHLVRIQEEVDPNLEMAAIHLKVYEAGGPALLFEKVKGSRYRAVSNLFG 60 M+ CI DLEKHGHL+RI+EEVDP+LEMA+IHLK Y AGGPAL FE VKGS+Y AVSNLFG Sbjct: 5 MKACIEDLEKHGHLLRIKEEVDPHLEMASIHLKTYAAGGPALYFENVKGSKYPAVSNLFG 64 Query: 61 TIERSKFIFRDTWESSQDVIALRSDPMKALKQPFKYIGTGLAARKALPLKK-GNGIPAGF 119 T+ERSKFIFR T E Q VIALR DPM ALK P + + +G +A KALP+KK + I Sbjct: 65 TLERSKFIFRHTLEGVQKVIALRDDPMYALKHPLQNVSSGFSAVKALPMKKPAHAIHDTH 124 Query: 120 EEIQISDLPQIKHWPGDGGAFVTLPQVYSEDPDKPGIMNSNLGMYRIQLSGNEYEINKEV 179 +EIQI DLPQIK WP DGGAFVTLPQVYSEDPDKPG MN+NLGMYR+QLSGN+Y++N+EV Sbjct: 125 DEIQIEDLPQIKSWPKDGGAFVTLPQVYSEDPDKPGPMNANLGMYRVQLSGNDYKMNEEV 184 Query: 180 GVHYQIHRGIGIHQTK 195 G+HYQIHRGIGIHQ+K Sbjct: 185 GIHYQIHRGIGIHQSK 200 >Q5WAQ6.1 Q5WAQ6_BACSK 3-polyprenyl-4-hydroxybenzoate decarboxylase Length = 608 Score = 292 bits (747), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 134/195 (68%), Positives = 163/195 (83%) Query: 1 MEECIVDLEKHGHLVRIQEEVDPNLEMAAIHLKVYEAGGPALLFEKVKGSRYRAVSNLFG 60 +EECI+DLEKHGHLVRI+EEVDP LEMAAI ++Y GGPA+LFE+VKGS+YRAV+NLFG Sbjct: 5 LEECILDLEKHGHLVRIEEEVDPYLEMAAIQRRLYREGGPAVLFERVKGSKYRAVANLFG 64 Query: 61 TIERSKFIFRDTWESSQDVIALRSDPMKALKQPFKYIGTGLAARKALPLKKGNGIPAGFE 120 T+ERSKF+FR W + VIALR DPMKA K+P + +G GL+A KALP++K + E Sbjct: 65 TMERSKFLFRKNWHKVEQVIALRDDPMKAAKRPLQQLGNGLSALKALPMRKPGLNGSQLE 124 Query: 121 EIQISDLPQIKHWPGDGGAFVTLPQVYSEDPDKPGIMNSNLGMYRIQLSGNEYEINKEVG 180 EI +SD+P + WP DGGAFVTLPQVYSEDPDKPG+MN+NLGMYR+QL+GN+YE NKEVG Sbjct: 125 EISLSDIPFVHSWPNDGGAFVTLPQVYSEDPDKPGLMNANLGMYRVQLNGNDYEPNKEVG 184 Query: 181 VHYQIHRGIGIHQTK 195 +HYQI RGIG+HQ K Sbjct: 185 LHYQIQRGIGVHQAK 199 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.140 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,366,888,809 Number of extensions: 57644674 Number of successful extensions: 101112 Number of sequences better than 1.0e-05: 626 Number of HSP's gapped: 100463 Number of HSP's successfully gapped: 626 Length of query: 228 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 97 Effective length of database: 1,826,543,238 Effective search space: 177174694086 Effective search space used: 177174694086 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)