BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0033.p (367 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6V4.1 B3K6V4_9BACI UbiD family decarboxylase 601 e-170 C0ZEE1.1 C0ZEE1_BREBN Putative uncharacterized protein 589 e-166 Q9K605.1 Q9K605_BACHD BH3930 protein 558 e-157 Q5WAQ6.1 Q5WAQ6_BACSK 3-polyprenyl-4-hydroxybenzoate decarboxylase 533 e-150 A8VR28.1 A8VR28_9BACI Putative uncharacterized protein 487 e-136 >B3K6V4.1 B3K6V4_9BACI UbiD family decarboxylase Length = 612 Score = 601 bits (1550), Expect = e-170, Method: Compositional matrix adjust. Identities = 281/364 (77%), Positives = 319/364 (87%), Gaps = 3/364 (0%) Query: 2 DGFCVSRDADFVITGEIHPGETRPEGPFGDHLGYYSLTHPFPVMKVHKVYAKQGAIFPFT 61 DG+C+S DADFVITGEIHPGET+PEGPFGDHLGYYSL HPFPVM+VHKVYAKQ AI+PFT Sbjct: 252 DGYCISHDADFVITGEIHPGETKPEGPFGDHLGYYSLVHPFPVMRVHKVYAKQQAIYPFT 311 Query: 62 VVGRPPQEDTSFGELIHELTGGAVKQEVPGVKEVHAVDAAGVHPLLFAIGSERYTPYQQL 121 VVGRPPQEDTSFGELIHELTGGA++QE+PGVKEVHAVDAAGVHPLLFAIGSERYTPYQQ+ Sbjct: 312 VVGRPPQEDTSFGELIHELTGGAIRQEIPGVKEVHAVDAAGVHPLLFAIGSERYTPYQQV 371 Query: 122 KQPAELLTIANRILGTGQLSLAKYLFITAEEERPVSTHNIEDFLAYILERINLHRDIHFQ 181 KQPAELLTI+NRILGTGQLSLAKYLFI AEE++P+STH IEDFL YILERI+L RDIHFQ Sbjct: 372 KQPAELLTISNRILGTGQLSLAKYLFIAAEEKQPLSTHRIEDFLTYILERIDLQRDIHFQ 431 Query: 182 TNTTIDTLDYSGTGINSGSKVVFAAVGEQKRTLCTEVPVILENLENLQGFGQAKMIMPGI 241 TNTTIDTLDYSGTG+N+GSKVVFAAVG++KR LC VP E L +L G+ AK IMPGI Sbjct: 432 TNTTIDTLDYSGTGLNTGSKVVFAAVGDKKRDLCQAVP---EALTDLPGYAPAKWIMPGI 488 Query: 242 VALQGPKFTDYAEARKETDKLGAAVQEQGALDTCPMIILCDDSTFMSETLSNFLWATFTR 301 VA+QG FT Y++ +E L A++E+G+L +CPMIILCDDS FMS TL+NFLWATFTR Sbjct: 489 VAIQGAPFTSYSDVAQEMSSLSDAIRERGSLPSCPMIILCDDSEFMSATLNNFLWATFTR 548 Query: 302 SNPSHDIYGVNSGVENKHWFCDNVIIDARVKPHQAPPLVPDAEVERKIERFFVQGAVLGG 361 SNPSHDI+GVNS E+KHW CD VIIDAR KPHQAPPL+PDAEVER I+R F G L Sbjct: 549 SNPSHDIHGVNSRYEHKHWGCDTVIIDARTKPHQAPPLIPDAEVERSIQRLFANGGSLSR 608 Query: 362 LNVK 365 ++++ Sbjct: 609 ISLR 612 >C0ZEE1.1 C0ZEE1_BREBN Putative uncharacterized protein Length = 609 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 272/362 (75%), Positives = 317/362 (87%), Gaps = 3/362 (0%) Query: 1 VDGFCVSRDADFVITGEIHPGETRPEGPFGDHLGYYSLTHPFPVMKVHKVYAKQGAIFPF 60 +DG+C+S DADFVITG+I+PG+T+PEGPFGDHLGYYSL HPFPVMKV KVYAK AI+PF Sbjct: 250 IDGYCISNDADFVITGDIYPGDTKPEGPFGDHLGYYSLIHPFPVMKVKKVYAKPNAIWPF 309 Query: 61 TVVGRPPQEDTSFGELIHELTGGAVKQEVPGVKEVHAVDAAGVHPLLFAIGSERYTPYQQ 120 TVVGRPPQEDTSFG+LIHELTG A+KQE+PGVKEVHAVDAAGVHPLLFAIGSERYTPYQ+ Sbjct: 310 TVVGRPPQEDTSFGQLIHELTGDAIKQEIPGVKEVHAVDAAGVHPLLFAIGSERYTPYQE 369 Query: 121 LKQPAELLTIANRILGTGQLSLAKYLFITAEEERPVSTHNIEDFLAYILERINLHRDIHF 180 +KQP E+LTIANRILGTGQLSLAKYLFITAEE RP++TH+ DF+ YILERI+LHRD+HF Sbjct: 370 VKQPTEMLTIANRILGTGQLSLAKYLFITAEENRPLTTHDEVDFMTYILERIDLHRDVHF 429 Query: 181 QTNTTIDTLDYSGTGINSGSKVVFAAVGEQKRTLCTEVPVILENLENLQGFGQAKMIMPG 240 TNTTIDTLDYSGTG+NSGSKVV AA G+QKR LC +VP + L++L+ F A++IMPG Sbjct: 430 YTNTTIDTLDYSGTGLNSGSKVVLAAYGDQKRELCKDVP---DELKDLREFENARLIMPG 486 Query: 241 IVALQGPKFTDYAEARKETDKLGAAVQEQGALDTCPMIILCDDSTFMSETLSNFLWATFT 300 +V++QG FTDYA A+++ L A+Q +G + +CPMIILCDDSTFMS +L NF+WATFT Sbjct: 487 VVSIQGAAFTDYANAQQQLQNLCDAIQARGPIPSCPMIILCDDSTFMSASLQNFMWATFT 546 Query: 301 RSNPSHDIYGVNSGVENKHWFCDNVIIDARVKPHQAPPLVPDAEVERKIERFFVQGAVLG 360 RSNPSHDIYGVNS ENKHW CDN+IIDAR KPHQAPPLVPD VE+ IER FV+GA LG Sbjct: 547 RSNPSHDIYGVNSYYENKHWGCDNLIIDARTKPHQAPPLVPDPTVEKNIERLFVKGASLG 606 Query: 361 GL 362 G+ Sbjct: 607 GI 608 >Q9K605.1 Q9K605_BACHD BH3930 protein Length = 610 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 260/359 (72%), Positives = 301/359 (83%), Gaps = 3/359 (0%) Query: 1 VDGFCVSRDADFVITGEIHPGETRPEGPFGDHLGYYSLTHPFPVMKVHKVYAKQGAIFPF 60 VDG+C+S DADFVITGEI PG+T+PEGPFGDHLGYYSL H FPVMKVHKVYAKQGAI+PF Sbjct: 249 VDGYCISHDADFVITGEIPPGDTKPEGPFGDHLGYYSLIHDFPVMKVHKVYAKQGAIWPF 308 Query: 61 TVVGRPPQEDTSFGELIHELTGGAVKQEVPGVKEVHAVDAAGVHPLLFAIGSERYTPYQQ 120 TVVGRPPQEDTSFG LIHELTG AVK E+PGVKEVHAVDAAGVHPLLFAIGSERYTPYQ+ Sbjct: 309 TVVGRPPQEDTSFGALIHELTGDAVKLEIPGVKEVHAVDAAGVHPLLFAIGSERYTPYQK 368 Query: 121 LKQPAELLTIANRILGTGQLSLAKYLFITAEEERPVSTHNIEDFLAYILERINLHRDIHF 180 +KQPAELLTIANRILGTGQLSLAKYLFITAE+++P+ TH E+FL Y+LERI+LHRDIHF Sbjct: 369 VKQPAELLTIANRILGTGQLSLAKYLFITAEQDKPLDTHKEEEFLTYLLERIDLHRDIHF 428 Query: 181 QTNTTIDTLDYSGTGINSGSKVVFAAVGEQKRTLCTEVPVILENLENLQGFGQAKMIMPG 240 QTNTTIDTLDYSGTG+N+GSKVV AA G++KR LC EVP E + LQ F +++MPG Sbjct: 429 QTNTTIDTLDYSGTGLNTGSKVVIAAYGDKKRELCQEVP---ELFKGLQTFQNPRLVMPG 485 Query: 241 IVALQGPKFTDYAEARKETDKLGAAVQEQGALDTCPMIILCDDSTFMSETLSNFLWATFT 300 +VAL+GP FT Y A++E + + G L +CPMI++CDDS F+S+ ++NF+W TFT Sbjct: 486 VVALEGPSFTSYERAQEEFRAFSETITQNGELPSCPMIVVCDDSEFISKNINNFVWVTFT 545 Query: 301 RSNPSHDIYGVNSGVENKHWFCDNVIIDARVKPHQAPPLVPDAEVERKIERFFVQGAVL 359 RSNPSHD+YGVNS ENKHW CDN+IID R KPH APPL+PD VE I R F +G L Sbjct: 546 RSNPSHDMYGVNSFYENKHWGCDNMIIDVRTKPHHAPPLIPDPTVEANIRRLFEKGGSL 604 >Q5WAQ6.1 Q5WAQ6_BACSK 3-polyprenyl-4-hydroxybenzoate decarboxylase Length = 608 Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust. Identities = 248/360 (68%), Positives = 302/360 (83%), Gaps = 3/360 (0%) Query: 1 VDGFCVSRDADFVITGEIHPGETRPEGPFGDHLGYYSLTHPFPVMKVHKVYAKQGAIFPF 60 VDG+ VS DADFVITG+I+P ET+PEGPFGDHLGYYSLTHPFPVMKVHKVYA++ AI+PF Sbjct: 250 VDGYAVSHDADFVITGDIYPDETKPEGPFGDHLGYYSLTHPFPVMKVHKVYARKNAIYPF 309 Query: 61 TVVGRPPQEDTSFGELIHELTGGAVKQEVPGVKEVHAVDAAGVHPLLFAIGSERYTPYQQ 120 TVVGRPPQEDT+FG LIHELTG AV QE+PGVKEVHAVDAAGVHPLLFAIGSERYTPYQ+ Sbjct: 310 TVVGRPPQEDTTFGALIHELTGDAVTQELPGVKEVHAVDAAGVHPLLFAIGSERYTPYQK 369 Query: 121 LKQPAELLTIANRILGTGQLSLAKYLFITAEEERPVSTHNIEDFLAYILERINLHRDIHF 180 +KQP ELLT+AN ILG GQLSLAKYLFITAEE++P+STH+ FL YILERI+L RDIHF Sbjct: 370 VKQPMELLTMANAILGFGQLSLAKYLFITAEEDKPISTHDEAAFLQYILERIDLRRDIHF 429 Query: 181 QTNTTIDTLDYSGTGINSGSKVVFAAVGEQKRTLCTEVPVILENLENLQGFGQAKMIMPG 240 QTNTTIDTLDYSGTG+NSGSKVV AA GE+ R LCT +P L+ + + +A +MPG Sbjct: 430 QTNTTIDTLDYSGTGLNSGSKVVLAAYGEKLRELCTAIPSELKECDKIT---KASYVMPG 486 Query: 241 IVALQGPKFTDYAEARKETDKLGAAVQEQGALDTCPMIILCDDSTFMSETLSNFLWATFT 300 +VA++ F++Y +A +E ++L AA+ ++ +L +CP+++LCDDS F+S +L+NFLW TFT Sbjct: 487 VVAIETTAFSNYEQAEQELNELTAAIAKKSSLPSCPLLVLCDDSEFVSASLANFLWVTFT 546 Query: 301 RSNPSHDIYGVNSGVENKHWFCDNVIIDARVKPHQAPPLVPDAEVERKIERFFVQGAVLG 360 RSNPSHD YG+NS +E+KHW CD +IIDAR+K H APPLV D VE++++RFF G L Sbjct: 547 RSNPSHDTYGINSFIEHKHWGCDALIIDARIKGHHAPPLVEDEAVEQRVDRFFQAGGPLA 606 >A8VR28.1 A8VR28_9BACI Putative uncharacterized protein Length = 609 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 223/353 (63%), Positives = 282/353 (79%), Gaps = 2/353 (0%) Query: 1 VDGFCVSRDADFVITGEIHPGETRPEGPFGDHLGYYSLTHPFPVMKVHKVYAKQGAIFPF 60 +DG+CVS DADFVITGEI+P ET+PEGPFGDHLGYYSLTH FPVM+VHKV+A++ A++PF Sbjct: 251 IDGYCVSLDADFVITGEIYPDETKPEGPFGDHLGYYSLTHEFPVMRVHKVFARRDAVWPF 310 Query: 61 TVVGRPPQEDTSFGELIHELTGGAVKQEVPGVKEVHAVDAAGVHPLLFAIGSERYTPYQQ 120 TVVGRPPQEDTSFG+LIHELTG A+K E+PGV+EVHA+DAAGVHPLLF IGSERYTP+ + Sbjct: 311 TVVGRPPQEDTSFGDLIHELTGEAIKSEIPGVQEVHAIDAAGVHPLLFVIGSERYTPFDE 370 Query: 121 LKQPAELLTIANRILGTGQLSLAKYLFITAEEERPVSTHNIEDFLAYILERINLHRDIHF 180 + +P ELLTIANR+LGT QLSLAKYL+ITAE+++P+ TH+ F+ YILER+ L RD+HF Sbjct: 371 VDRPQELLTIANRVLGTNQLSLAKYLWITAEKDQPLDTHDEAGFMQYILERLELRRDLHF 430 Query: 181 QTNTTIDTLDYSGTGINSGSKVVFAAVGEQKRTLCTEVPVILENLENLQGFGQAKMIMPG 240 QT TTIDTLDYSG G+N GSKVV AA G+Q+R L +P L+++ F A ++MPG Sbjct: 431 QTKTTIDTLDYSGEGLNEGSKVVLAAYGKQRRELAKVIPDSLKDV--TAPFTNANLVMPG 488 Query: 241 IVALQGPKFTDYAEARKETDKLGAAVQEQGALDTCPMIILCDDSTFMSETLSNFLWATFT 300 IVA++GP + +A+ + + L ++ LD PMI++ DD++F S TL+NF+W TFT Sbjct: 489 IVAVEGPAYGHADKAKTDMETLSKSLSAARDLDGVPMIVVVDDASFTSATLNNFVWVTFT 548 Query: 301 RSNPSHDIYGVNSGVENKHWFCDNVIIDARVKPHQAPPLVPDAEVERKIERFF 353 RSNPSHD+YGVN + NKHW CD +IIDAR KPH APPL+ D E E+ + FF Sbjct: 549 RSNPSHDMYGVNEAIVNKHWGCDAMIIDARRKPHHAPPLIADPETEQNVAAFF 601 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,284,037,257 Number of extensions: 97464388 Number of successful extensions: 186362 Number of sequences better than 1.0e-05: 673 Number of HSP's gapped: 185719 Number of HSP's successfully gapped: 673 Length of query: 367 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 230 Effective length of database: 1,770,017,148 Effective search space: 407103944040 Effective search space used: 407103944040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)