BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0030.p (305 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0CXX2.1 C0CXX2_9CLOT Putative uncharacterized protein 207 1e-51 A9KIF8.1 A9KIF8_CLOPH Helix-turn-helix type 11 domain protein 195 4e-48 B9DYN2.1 B9DYN2_CLOK1 Putative uncharacterized protein 177 1e-42 A5N528.1 A5N528_CLOK5 Predicted transcriptional regulator 177 1e-42 B1QD05.1 B1QD05_CLOBO Putative uncharacterized protein 174 1e-41 >C0CXX2.1 C0CXX2_9CLOT Putative uncharacterized protein Length = 304 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/307 (40%), Positives = 160/307 (52%), Gaps = 9/307 (2%) Query: 1 MKMDRLLGIVVYLLNRETVSARELAEKFEVSPRTIQRDMASISLAGIPVGSQQGLNGGYY 60 MK+DRL GI VYLLN + SA ELA KFEVS RT+QRD+ ++ AGIPV ++ G GGY Sbjct: 1 MKIDRLYGITVYLLNHKKASASELARKFEVSVRTVQRDIDALCQAGIPVAAESGAKGGYS 60 Query: 61 IIDSYKMNRQLLQSEDYTYILAALKGLLSGYDSLRAQSTVEIMTSLA-PDKAALGPMLQL 119 I D+++M+ Q + EDY I ALKG S S S +E T+L+ PD + L Sbjct: 61 IPDTFRMDSQAITQEDYGLIFTALKGFSSAMPSPNIASALEKFTALSKPD----NERIIL 116 Query: 120 NLGVLREGEGTGGNIALVEKAIREKIWLGFQYTDARGGVTDRGVEPLLLTYKWYAWYLFA 179 + VLREG T I ++ AIR K + F YT+A VEP+ L Y+WYAWYL A Sbjct: 117 DFSVLREGGET--LIKQLQTAIRRKCCVRFTYTNADNMTRVHTVEPVALVYRWYAWYLLA 174 Query: 180 YCCDKQDYRLFRLSRMRSVHLMSQTFTLTHKDAELLLSEHSDLRP--QTKVRLACMAEHK 237 Y ++DYR ++L RM + FT+ H AE +L EH P T V + C + Sbjct: 175 YSTVREDYRTYKLVRMEQAEITGLPFTMEHAPAETILREHDRHSPLAHTTVTIRCRPAAR 234 Query: 238 VLLQEAFPQAXXXXXXXXXXXMSFTVPEEEQGWFGKLLEYSQRITVLEPEELRLRMHTQA 297 E M +V E E WFG LL I +LEPE +R R+ A Sbjct: 235 SRAIEYLNGTVLRELEDGECEMKLSVIENEHLWFGTLLALGDEIEILEPERIRERVIRTA 294 Query: 298 AFILEKY 304 I Y Sbjct: 295 KNICSLY 301 >A9KIF8.1 A9KIF8_CLOPH Helix-turn-helix type 11 domain protein Length = 307 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 169/307 (55%), Gaps = 5/307 (1%) Query: 1 MKMDRLLGIVVYLLNRETVSARELAEKFEVSPRTIQRDMASISLAGIPVGSQQGLNGGYY 60 MK+DRLL I +YLLN + SA +LA +FEVS RTI RD+ S+ LAGIPV S G++GGY Sbjct: 1 MKIDRLLAITIYLLNHKRTSAGDLANRFEVSTRTIMRDIDSLCLAGIPVISTFGVDGGYE 60 Query: 61 IIDSYKMNRQLLQSEDYTYILAALKGLLSGYDSLRAQSTVEIMTSLAPDKAALGPMLQLN 120 I+ +++M +Q+ DY++ILAALKGL + Y ++T+E + SL + + ++ Sbjct: 61 IMKTFQMEKQVAGEIDYSFILAALKGLSTAYPDRELENTIEKLQSLGENSTQ---SIVID 117 Query: 121 LGVLREGEGTGGNIALVEKAIREKIWLGFQYTDARGGVTDRGVEPLLLTYKWYAWYLFAY 180 LGV E +G ++++ AI+ + + F YT+ VEP+ + YKWY WYL AY Sbjct: 118 LGVANEHKGINSLLSMLSHAIKIEHIVEFTYTNTDNITKSAVVEPVSIIYKWYHWYLLAY 177 Query: 181 CCDKQDYRLFRLSRMRSVHLMSQTFTLTH--KDAELLLSEHSDLRPQTKVRLACMAEHKV 238 + Y L++L RM + + Q T+ H KDA + ++ R T ++L C + + Sbjct: 178 QPSHETYCLYKLIRMEHLTIHDQENTMLHIPKDAMHIWESRNETRTMTTIKLRCSSSIRS 237 Query: 239 LLQEAFPQAXXXXXXXXXXXMSFTVPEEEQGWFGKLLEYSQRITVLEPEELRLRMHTQAA 298 E VPE EQ WFG +L + ++ ++EP E+ R+ + Sbjct: 238 RCLEYLNGTIIEEYSDGDFLYEIMVPENEQFWFGTVLSFGDKVKIIEPPEIIERVVATCS 297 Query: 299 FILEKYR 305 ++ +Y+ Sbjct: 298 EVINQYK 304 >B9DYN2.1 B9DYN2_CLOK1 Putative uncharacterized protein Length = 311 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 100/298 (33%), Positives = 168/298 (56%), Gaps = 10/298 (3%) Query: 1 MKMDRLLGIVVYLLNRETVSARELAEKFEVSPRTIQRDMASISLAGIPVGSQQGLNGGYY 60 MK++RLL IVV LLNR+ +SA EL+EKFEVS RTI RD+ +I++AGIP+ S+QG NGG+Y Sbjct: 1 MKINRLLAIVVMLLNRDKISAVELSEKFEVSIRTIYRDIDAINMAGIPIASKQGNNGGFY 60 Query: 61 IIDSYKMNRQLLQSEDYTYILAALKGLLSGYDSLRAQSTVEIMTSLAPDKAALGPML--- 117 I+++YK+N Q L ED I+ ALK + ++ + +E M ++ P L Sbjct: 61 ILENYKINHQFLTLEDMISIVEALKNINGVLNNKNVEIAMEKMKNIIPSNKKSEVDLHFK 120 Query: 118 QLNLGVL----REGEGTGGNIALVEKAIREKIWLGFQYTDARGGVTDRGVEPLLLTYKWY 173 Q+ + L ++ E ++ KA++E + F Y ++RG R VEP+ L +K + Sbjct: 121 QVFIDTLPWGFKKSENENIKYKVIYKALKENKCISFNYRNSRGEYILREVEPVTLVFKGF 180 Query: 174 AWYLFAYCCDKQDYRLFRLSRMRSVHLMSQTFTLTHKDAELLLSEHSDLRPQTKVRLACM 233 +WY+F++C K+DYR+F+L+RM + ++++ + +S S + K+ L Sbjct: 181 SWYIFSFCLLKEDYRIFKLTRMDGLEILNRQVSKERISYGEYISSESTEKSPVKLLLKFS 240 Query: 234 AEHKVLLQEAFPQAXXXXXXXXXXXMSFTVPEEEQGW-FGKLLEYSQRITVLEPEELR 290 E + +Q+ F + ++ V E+ GW + +L Y + + VL P+ +R Sbjct: 241 EEVRYRIQDYFHEEEMTFLEDGSVIVNTEVIED--GWVYSMVLSYGEYVEVLAPKHIR 296 >A5N528.1 A5N528_CLOK5 Predicted transcriptional regulator Length = 311 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 100/298 (33%), Positives = 168/298 (56%), Gaps = 10/298 (3%) Query: 1 MKMDRLLGIVVYLLNRETVSARELAEKFEVSPRTIQRDMASISLAGIPVGSQQGLNGGYY 60 MK++RLL IVV LLNR+ +SA EL+EKFEVS RTI RD+ +I++AGIP+ S+QG NGG+Y Sbjct: 1 MKINRLLAIVVMLLNRDKISAVELSEKFEVSIRTIYRDIDAINMAGIPIASKQGNNGGFY 60 Query: 61 IIDSYKMNRQLLQSEDYTYILAALKGLLSGYDSLRAQSTVEIMTSLAPDKAALGPML--- 117 I+++YK+N Q L ED I+ ALK + ++ + +E M ++ P L Sbjct: 61 ILENYKINHQFLTLEDMISIVEALKNINGVLNNKNVEIAMEKMKNIIPSNKKSEVDLHFK 120 Query: 118 QLNLGVL----REGEGTGGNIALVEKAIREKIWLGFQYTDARGGVTDRGVEPLLLTYKWY 173 Q+ + L ++ E ++ KA++E + F Y ++RG R VEP+ L +K + Sbjct: 121 QVFIDTLPWGFKKSENENIKYKVIYKALKENKCISFNYRNSRGEYILREVEPVTLVFKGF 180 Query: 174 AWYLFAYCCDKQDYRLFRLSRMRSVHLMSQTFTLTHKDAELLLSEHSDLRPQTKVRLACM 233 +WY+F++C K+DYR+F+L+RM + ++++ + +S S + K+ L Sbjct: 181 SWYIFSFCLLKEDYRIFKLTRMDGLEILNRQVSKERISYGEYISSESTEKSPVKLLLKFS 240 Query: 234 AEHKVLLQEAFPQAXXXXXXXXXXXMSFTVPEEEQGW-FGKLLEYSQRITVLEPEELR 290 E + +Q+ F + ++ V E+ GW + +L Y + + VL P+ +R Sbjct: 241 EEVRYRIQDYFHEEEMTFLEDGSVIVNTEVIED--GWVYSMVLSYGEYVEVLAPKHIR 296 >B1QD05.1 B1QD05_CLOBO Putative uncharacterized protein Length = 314 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 107/301 (35%), Positives = 169/301 (56%), Gaps = 16/301 (5%) Query: 1 MKMDRLLGIVVYLLNRETVSARELAEKFEVSPRTIQRDMASISLAGIPVGSQQGLNGGYY 60 MK++RLL IVV LLNRE +SA ELAEKFEVS RTI RD+ +I+LAGIP+ SQ G NGG+Y Sbjct: 1 MKINRLLAIVVMLLNREKISASELAEKFEVSVRTIYRDIEAINLAGIPIVSQIGNNGGFY 60 Query: 61 IIDSYKMNRQLLQSEDYTYILAALKGLLSGYDSLRAQSTVEIMTSLAP-DKAALGPML-- 117 IID+YK+N QLL ED I+ ALK + D+ + +E + ++ P +K + + Sbjct: 61 IIDNYKINHQLLTLEDMISIIEALKNMNKFLDNKNVEMAIEKVKNIVPKEKKEVFDLHFE 120 Query: 118 QLNLGVL----REGEGTGGNIALVEKAIREKIWLGFQYTDARGGVTDRGVEPLLLTYKWY 173 Q+ + L ++ E ++ A+ K + F Y +++G R VEPL L +K + Sbjct: 121 QMCIDTLPWGFKKCEEENLKYKIIYDAVDNKNCIAFDYRNSKGEYNWRQVEPLTLVFKGF 180 Query: 174 AWYLFAYCCDKQDYRLFRLSRMRSVHLMSQTFT---LTHKDAELLLSEHSDLRPQTKVRL 230 +WYLF++C K DYR F+LSRM ++ ++ + +++K E + S+ P T+V L Sbjct: 181 SWYLFSFCKLKNDYRFFKLSRMENLTVLHEKINENRISYK--EYINISESEQVP-TRVVL 237 Query: 231 ACMAEHKVLLQEAFPQAXXXXXXXXXXXMSFTVPEEEQGW-FGKLLEYSQRITVLEPEEL 289 + + + F + + + E++ W + +L Y + + VLEP + Sbjct: 238 KFSERVRYRIDDCFDKDEIKFQEDGSVIVDTYLLEDD--WIYSMILSYGECVEVLEPNHI 295 Query: 290 R 290 R Sbjct: 296 R 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,641,129,626 Number of extensions: 62837715 Number of successful extensions: 154416 Number of sequences better than 1.0e-05: 808 Number of HSP's gapped: 153772 Number of HSP's successfully gapped: 811 Length of query: 305 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 170 Effective length of database: 1,788,859,178 Effective search space: 304106060260 Effective search space used: 304106060260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)