BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0566.0028.p
         (130 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q721Z3.1 Q721Z3_LISMF Transcriptional regulator, MerR family          132   8e-30
C1L193.1 C1L193_LISMC Putative transcriptional regulator              132   8e-30
B8DGD9.1 B8DGD9_LISMH Transcriptional regulator, MerR family          132   8e-30
Q4EFG5.1 Q4EFG5_LISMO Transcriptional regulator, MerR family          132   8e-30
Q8Y8S2.1 Q8Y8S2_LISMO Lmo0822 protein                                 132   1e-29

>Q721Z3.1 Q721Z3_LISMF Transcriptional regulator, MerR family
          Length = 129

 Score =  132 bits (333), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 84/117 (71%)

Query: 4   SIKEASEKLGLPAHTIRYYEKEGLLPFLQRDGHGNRIFGEKDLESISLMNCFRATGLPVA 63
           +IKEASE  GL AHTIRYYE+EGL+PFL RD + NRIF    L  + L+ C R TG+P+A
Sbjct: 4   TIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGMPLA 63

Query: 64  TLKQMVDLTLQGDSTIPQRAAILRDYKMDLERQQQELDRAFAIVNMKLSKYDLLEQG 120
             K++V+LT  GD T+ +R A+L++++ D+ R+Q ELDRAF  +  KL+ Y+ LEQ 
Sbjct: 64  KQKEIVELTKGGDGTVSERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEQA 120


>C1L193.1 C1L193_LISMC Putative transcriptional regulator
          Length = 129

 Score =  132 bits (333), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 84/117 (71%)

Query: 4   SIKEASEKLGLPAHTIRYYEKEGLLPFLQRDGHGNRIFGEKDLESISLMNCFRATGLPVA 63
           +IKEASE  GL AHTIRYYE+EGL+PFL RD + NRIF    L  + L+ C R TG+P+A
Sbjct: 4   TIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGMPLA 63

Query: 64  TLKQMVDLTLQGDSTIPQRAAILRDYKMDLERQQQELDRAFAIVNMKLSKYDLLEQG 120
             K++V+LT  GD T+ +R A+L++++ D+ R+Q ELDRAF  +  KL+ Y+ LEQ 
Sbjct: 64  KQKEIVELTKGGDGTVSERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEQA 120


>B8DGD9.1 B8DGD9_LISMH Transcriptional regulator, MerR family
          Length = 129

 Score =  132 bits (333), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 84/117 (71%)

Query: 4   SIKEASEKLGLPAHTIRYYEKEGLLPFLQRDGHGNRIFGEKDLESISLMNCFRATGLPVA 63
           +IKEASE  GL AHTIRYYE+EGL+PFL RD + NRIF    L  + L+ C R TG+P+A
Sbjct: 4   TIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGMPLA 63

Query: 64  TLKQMVDLTLQGDSTIPQRAAILRDYKMDLERQQQELDRAFAIVNMKLSKYDLLEQG 120
             K++V+LT  GD T+ +R A+L++++ D+ R+Q ELDRAF  +  KL+ Y+ LEQ 
Sbjct: 64  KQKEIVELTKGGDGTVSERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEQA 120


>Q4EFG5.1 Q4EFG5_LISMO Transcriptional regulator, MerR family
          Length = 129

 Score =  132 bits (333), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/117 (52%), Positives = 84/117 (71%)

Query: 4   SIKEASEKLGLPAHTIRYYEKEGLLPFLQRDGHGNRIFGEKDLESISLMNCFRATGLPVA 63
           +IKEASE  GL AHTIRYYE+EGL+PFL RD + NRIF    L  + L+ C R TG+P+A
Sbjct: 4   TIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGMPLA 63

Query: 64  TLKQMVDLTLQGDSTIPQRAAILRDYKMDLERQQQELDRAFAIVNMKLSKYDLLEQG 120
             K++V+LT  GD T+ +R A+L++++ D+ R+Q ELDRAF  +  KL+ Y+ LEQ 
Sbjct: 64  KQKEIVELTKGGDGTVSERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEQA 120


>Q8Y8S2.1 Q8Y8S2_LISMO Lmo0822 protein
          Length = 129

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 84/116 (72%)

Query: 4   SIKEASEKLGLPAHTIRYYEKEGLLPFLQRDGHGNRIFGEKDLESISLMNCFRATGLPVA 63
           +IKEASE  GL AHTIRYYE+EGL+PFL RD + NRIF    L  + L+ C R TG+P+A
Sbjct: 4   TIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGMPLA 63

Query: 64  TLKQMVDLTLQGDSTIPQRAAILRDYKMDLERQQQELDRAFAIVNMKLSKYDLLEQ 119
             K++V+LT  GD T+ +R A+L++++ D+ R+Q ELDRAF  +  KL+ Y+ LEQ
Sbjct: 64  KQKEIVELTKGGDGTVSERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEQ 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.138    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 722,466,993
Number of extensions: 26029253
Number of successful extensions: 84651
Number of sequences better than 1.0e-05: 670
Number of HSP's gapped: 85111
Number of HSP's successfully gapped: 670
Length of query: 130
Length of database: 3,060,696,203
Length adjustment: 95
Effective length of query: 35
Effective length of database: 2,165,699,778
Effective search space: 75799492230
Effective search space used: 75799492230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)