BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0026.p (244 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65NU3.1 Q65NU3_BACLD Putative uncharacterized protein 319 1e-85 Q62Z90.1 Q62Z90_BACLD ABC transporter SpaF 319 1e-85 Q5WIQ7.1 Q5WIQ7_BACSK Lantibiotic ABC transporter ATP-binding pr... 314 5e-84 Q897V0.1 Q897V0_CLOTE Lantibiotic transport ATP-binding protein ... 308 3e-82 C3J691.1 C3J691_9BACI ABC transporter related 308 4e-82 >Q65NU3.1 Q65NU3_BACLD Putative uncharacterized protein Length = 239 Score = 319 bits (818), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 161/237 (67%), Positives = 189/237 (79%), Gaps = 6/237 (2%) Query: 4 ILETKHLNKRFKRQQAVEDVSLKIPAGTVYGLLGPNGAGKTTTLKMITGLLRPSGGEILL 63 +LET+HL K+F R QAV DVSL + ++YGLLGPNGAGK+TTLK++TG+L P+ G+IL Sbjct: 6 LLETRHLQKKFGRSQAVSDVSLSVEKNSIYGLLGPNGAGKSTTLKLLTGILNPTAGDILF 65 Query: 64 GGKPWERKQLERIGALIESPALYGNLTARENLTVHAKLLGQTAQRIDEVLHTVDLQETGS 123 G+ W+R L+ IG+LIESP LY NLTA EN VHA LLG RI EVL TVD+ TG Sbjct: 66 EGRQWKRSVLKDIGSLIESPPLYDNLTAYENAKVHAALLGLPDARITEVLKTVDMHHTGK 125 Query: 124 KKASQFSLGMKQRLGIAIALLNRPELLILDEPTNGLDPLGIQELRELIRSFPAQGITVIL 183 KKA QFS+GM+QRLGIAIALLNRP+LLILDEPTNGLDP+GIQELRELIRSFP QG+TVIL Sbjct: 126 KKAGQFSMGMRQRLGIAIALLNRPKLLILDEPTNGLDPIGIQELRELIRSFPEQGMTVIL 185 Query: 184 SSHILSEVEQIADYIXXXXXXXIISGGRLGHESKIHKGEDLETLFMQVVARNREQAG 240 SSHILSEVEQIAD+I IISGG LG++ KI+KG+DLE LFM VV RE+ G Sbjct: 186 SSHILSEVEQIADHI------GIISGGYLGYQGKINKGDDLERLFMDVVKSTREKEG 236 >Q62Z90.1 Q62Z90_BACLD ABC transporter SpaF Length = 238 Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 161/237 (67%), Positives = 189/237 (79%), Gaps = 6/237 (2%) Query: 4 ILETKHLNKRFKRQQAVEDVSLKIPAGTVYGLLGPNGAGKTTTLKMITGLLRPSGGEILL 63 +LET+HL K+F R QAV DVSL + ++YGLLGPNGAGK+TTLK++TG+L P+ G+IL Sbjct: 5 LLETRHLQKKFGRSQAVSDVSLSVEKNSIYGLLGPNGAGKSTTLKLLTGILNPTAGDILF 64 Query: 64 GGKPWERKQLERIGALIESPALYGNLTARENLTVHAKLLGQTAQRIDEVLHTVDLQETGS 123 G+ W+R L+ IG+LIESP LY NLTA EN VHA LLG RI EVL TVD+ TG Sbjct: 65 EGRQWKRSVLKDIGSLIESPPLYDNLTAYENAKVHAALLGLPDARITEVLKTVDMHHTGK 124 Query: 124 KKASQFSLGMKQRLGIAIALLNRPELLILDEPTNGLDPLGIQELRELIRSFPAQGITVIL 183 KKA QFS+GM+QRLGIAIALLNRP+LLILDEPTNGLDP+GIQELRELIRSFP QG+TVIL Sbjct: 125 KKAGQFSMGMRQRLGIAIALLNRPKLLILDEPTNGLDPIGIQELRELIRSFPEQGMTVIL 184 Query: 184 SSHILSEVEQIADYIXXXXXXXIISGGRLGHESKIHKGEDLETLFMQVVARNREQAG 240 SSHILSEVEQIAD+I IISGG LG++ KI+KG+DLE LFM VV RE+ G Sbjct: 185 SSHILSEVEQIADHI------GIISGGYLGYQGKINKGDDLERLFMDVVKSTREKEG 235 >Q5WIQ7.1 Q5WIQ7_BACSK Lantibiotic ABC transporter ATP-binding protein Length = 233 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 160/235 (68%), Positives = 188/235 (80%), Gaps = 6/235 (2%) Query: 4 ILETKHLNKRFKRQQAVEDVSLKIPAGTVYGLLGPNGAGKTTTLKMITGLLRPSGGEILL 63 +LETK L+KRF +Q AV VSL++P ++YGLLGPNGAGK+TTLKM+TG+LRPS GEIL Sbjct: 5 MLETKQLSKRFGKQAAVAGVSLRVPKNSIYGLLGPNGAGKSTTLKMLTGILRPSSGEILF 64 Query: 64 GGKPWERKQLERIGALIESPALYGNLTARENLTVHAKLLGQTAQRIDEVLHTVDLQETGS 123 G W R L+ IG+LIE+P LYGNLTA EN+ VHA L G QRI+EVLHTVDL TG Sbjct: 65 DGSHWNRSMLKDIGSLIEAPPLYGNLTAFENVKVHALLRGLPTQRIEEVLHTVDLTHTGK 124 Query: 124 KKASQFSLGMKQRLGIAIALLNRPELLILDEPTNGLDPLGIQELRELIRSFPAQGITVIL 183 KKASQFS+GMKQRLGIAIALLN+P+LLILDEPTNGLDPLGIQELRELI SFP +G+TVIL Sbjct: 125 KKASQFSMGMKQRLGIAIALLNQPKLLILDEPTNGLDPLGIQELRELITSFPQKGMTVIL 184 Query: 184 SSHILSEVEQIADYIXXXXXXXIISGGRLGHESKIHKGEDLETLFMQVVARNREQ 238 SSHILSEV+ +AD+I IIS GRLG++ I +DLE LFM+VV NR + Sbjct: 185 SSHILSEVQLMADHI------GIISEGRLGYQDSIKGKDDLEGLFMEVVKTNRRK 233 >Q897V0.1 Q897V0_CLOTE Lantibiotic transport ATP-binding protein spaF/mutF Length = 234 Score = 308 bits (788), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 155/237 (65%), Positives = 186/237 (78%), Gaps = 6/237 (2%) Query: 2 QYILETKHLNKRFKRQQAVEDVSLKIPAGTVYGLLGPNGAGKTTTLKMITGLLRPSGGEI 61 + ILETK L K FK+QQAV++VS+ + ++YGLLGPNGAGK+T LKMI G+LRP+ GE+ Sbjct: 3 EIILETKRLCKTFKKQQAVKEVSISVQRNSIYGLLGPNGAGKSTLLKMIIGMLRPTSGEV 62 Query: 62 LLGGKPWERKQLERIGALIESPALYGNLTARENLTVHAKLLGQTAQRIDEVLHTVDLQET 121 L G W RK L +IG+LIES LY NLTA+ENL V +LG RIDEVL V+L++T Sbjct: 63 LFDGHKWSRKDLIKIGSLIESAPLYENLTAKENLKVRTTVLGLPDSRIDEVLSIVELEDT 122 Query: 122 GSKKASQFSLGMKQRLGIAIALLNRPELLILDEPTNGLDPLGIQELRELIRSFPAQGITV 181 G K+A QFS+GMKQRLGIAIALLN P+LLILDEPTNGLDP GIQELRELIRSFP++GITV Sbjct: 123 GKKRAGQFSMGMKQRLGIAIALLNNPKLLILDEPTNGLDPFGIQELRELIRSFPSKGITV 182 Query: 182 ILSSHILSEVEQIADYIXXXXXXXIISGGRLGHESKIHKGEDLETLFMQVVARNREQ 238 ILSSHILSEVEQIAD+I IISGG LG+E ++ KGEDLE LFM + + R + Sbjct: 183 ILSSHILSEVEQIADHI------GIISGGVLGYEGELKKGEDLEKLFMSIAGKYRRE 233 >C3J691.1 C3J691_9BACI ABC transporter related Length = 230 Score = 308 bits (788), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 156/231 (67%), Positives = 186/231 (80%), Gaps = 6/231 (2%) Query: 2 QYILETKHLNKRFKRQQAVEDVSLKIPAGTVYGLLGPNGAGKTTTLKMITGLLRPSGGEI 61 +Y+LET+H++K F +Q AV+DVS+K+ T+YGLLGPNGAGK+T LKM+TGLLRP+ GEI Sbjct: 3 EYMLETRHISKAFGKQLAVDDVSMKVKKHTIYGLLGPNGAGKSTLLKMLTGLLRPTKGEI 62 Query: 62 LLGGKPWERKQLERIGALIESPALYGNLTARENLTVHAKLLGQTAQRIDEVLHTVDLQET 121 ++ G PW RK L+ IGALIESPALYGNLTA ENL VHAKLL RI EVL+ V L+ T Sbjct: 63 MINGHPWSRKDLKDIGALIESPALYGNLTAHENLLVHAKLLHLPDSRIQEVLNIVGLENT 122 Query: 122 GSKKASQFSLGMKQRLGIAIALLNRPELLILDEPTNGLDPLGIQELRELIRSFPAQGITV 181 G KKASQFSLGMKQRLGIA ALLN P+LLILDEPTNGLDPLGIQ+LR+LI+SF GITV Sbjct: 123 GKKKASQFSLGMKQRLGIAKALLNDPKLLILDEPTNGLDPLGIQDLRKLIKSFAENGITV 182 Query: 182 ILSSHILSEVEQIADYIXXXXXXXIISGGRLGHESKIHKGEDLETLFMQVV 232 ILSSHILSEV+Q+ADYI II G+L ++ KI + +DLE LF+ VV Sbjct: 183 ILSSHILSEVKQLADYI------GIIQNGKLKYQGKIDESQDLEKLFIDVV 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,370,903,586 Number of extensions: 57329378 Number of successful extensions: 477959 Number of sequences better than 1.0e-05: 94088 Number of HSP's gapped: 373375 Number of HSP's successfully gapped: 101660 Length of query: 244 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 112 Effective length of database: 1,817,122,223 Effective search space: 203517688976 Effective search space used: 203517688976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)