BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0025.p (252 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4IK03.1 A4IK03_GEOTN Putative SpaE 197 1e-48 Q5L384.1 Q5L384_GEOKA Lantibiotic ABC transporter (Permease) 196 1e-48 B4BRA8.1 B4BRA8_9BACI Lantibiotic ABC transporter (Permease) 196 1e-48 C5D4G4.1 C5D4G4_9BACI Lantibiotic ABC transporter (Permease) 192 2e-47 C3J690.1 C3J690_9BACI Putative SpaE 191 5e-47 >A4IK03.1 A4IK03_GEOTN Putative SpaE Length = 248 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 107/251 (42%), Positives = 141/251 (56%), Gaps = 4/251 (1%) Query: 1 MLNIFQSEHLKYRRSFSVKXXXXXXXXXXXXXXXXXXXXPKGQSLPGDLFLGMVFNWWPF 60 MLN+F+SE LKY+R+F+ K P S + F VFNWWP Sbjct: 1 MLNMFESERLKYKRTFAKKLVFIAPLFFVLYAIITM---PTVNS-THNYFEYAVFNWWPL 56 Query: 61 IFVPLGTALLCALAEVRERKAGNYRGLRLHNVRPGALWFGKIMVLAYYMXXXXXXXXXXX 120 IFVP+GTAL+ +L+ VRE+K+GN + LR H++ LW+ KI V+AYYM Sbjct: 57 IFVPIGTALIASLSTVREKKSGNDKVLRCHDISIVRLWWSKITVIAYYMLLSTIELIILL 116 Query: 121 XXXXXXXXXXXXPVEKVVVASLLTWXXXXXXXXXXXXXXXWKGMPASIGLGVAGMFAGVI 180 V ASL+ W GM SI + V G+ GV+ Sbjct: 117 VLLKWLFPNSLSSATVAVFASLVIWLTSLAYIPIGLFVAERFGMVVSIIVSVIGLALGVV 176 Query: 181 AAPGPNWLYVPWSWALRLMCPVAGVHPNGVPLESGNPLLEPSVIPVGIAVSLLFFAASSW 240 A P WL++PWSW +R+MCP+ GVHPNGVPLE G+PLL+PSVIP+G+A++L+ F S+ Sbjct: 177 MAAQPYWLFIPWSWGMRMMCPIVGVHPNGVPLEKGSPLLDPSVIPIGLAIALVMFLLLSF 236 Query: 241 LTGVWFARKEV 251 LT VWFARKEV Sbjct: 237 LTAVWFARKEV 247 >Q5L384.1 Q5L384_GEOKA Lantibiotic ABC transporter (Permease) Length = 248 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 107/251 (42%), Positives = 141/251 (56%), Gaps = 4/251 (1%) Query: 1 MLNIFQSEHLKYRRSFSVKXXXXXXXXXXXXXXXXXXXXPKGQSLPGDLFLGMVFNWWPF 60 MLN+F+SE LKY+R+F+ K P S + F VFNWWP Sbjct: 1 MLNMFESERLKYKRTFAKKLVFIAPLFFVLYAIITM---PTINS-THNYFEYAVFNWWPL 56 Query: 61 IFVPLGTALLCALAEVRERKAGNYRGLRLHNVRPGALWFGKIMVLAYYMXXXXXXXXXXX 120 IFVP+GTAL+ +L+ VRE+K+GN + LR H++ LW+ KI V+AYYM Sbjct: 57 IFVPIGTALIASLSTVREKKSGNDKVLRCHDISIVRLWWSKITVIAYYMLLSTIELIILL 116 Query: 121 XXXXXXXXXXXXPVEKVVVASLLTWXXXXXXXXXXXXXXXWKGMPASIGLGVAGMFAGVI 180 V ASL+ W GM SI + V G+ GV+ Sbjct: 117 VLLKWLFPNSLSSATVAVFASLVIWLTSLAYIPIGLFVAERFGMVVSIIVSVIGLALGVV 176 Query: 181 AAPGPNWLYVPWSWALRLMCPVAGVHPNGVPLESGNPLLEPSVIPVGIAVSLLFFAASSW 240 A P WL++PWSW +R+MCP+ GVHPNGVPLE G+PLL+PSVIP+G+A++L+ F S+ Sbjct: 177 MAAQPYWLFIPWSWGMRMMCPIVGVHPNGVPLEKGSPLLDPSVIPIGLAIALVMFLLLSF 236 Query: 241 LTGVWFARKEV 251 LT VWFARKEV Sbjct: 237 LTAVWFARKEV 247 >B4BRA8.1 B4BRA8_9BACI Lantibiotic ABC transporter (Permease) Length = 248 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 107/251 (42%), Positives = 141/251 (56%), Gaps = 4/251 (1%) Query: 1 MLNIFQSEHLKYRRSFSVKXXXXXXXXXXXXXXXXXXXXPKGQSLPGDLFLGMVFNWWPF 60 MLN+F+SE LKY+R+F+ K P S + F VFNWWP Sbjct: 1 MLNMFESERLKYKRTFAKKLVFIAPLFFVLYAIITM---PTINS-THNYFEYAVFNWWPL 56 Query: 61 IFVPLGTALLCALAEVRERKAGNYRGLRLHNVRPGALWFGKIMVLAYYMXXXXXXXXXXX 120 IFVP+GTAL+ +L+ VRE+K+GN + LR H++ LW+ KI V+AYYM Sbjct: 57 IFVPIGTALIASLSTVREKKSGNDKVLRCHDISIVRLWWSKITVIAYYMLLSTIELIILL 116 Query: 121 XXXXXXXXXXXXPVEKVVVASLLTWXXXXXXXXXXXXXXXWKGMPASIGLGVAGMFAGVI 180 V ASL+ W GM SI + V G+ GV+ Sbjct: 117 VLLKWLFPNSLSSATVAVFASLVIWLTSLAYIPIGLFVAERFGMVVSIIVSVIGLALGVV 176 Query: 181 AAPGPNWLYVPWSWALRLMCPVAGVHPNGVPLESGNPLLEPSVIPVGIAVSLLFFAASSW 240 A P WL++PWSW +R+MCP+ GVHPNGVPLE G+PLL+PSVIP+G+A++L+ F S+ Sbjct: 177 MAAQPYWLFIPWSWGMRMMCPIVGVHPNGVPLEKGSPLLDPSVIPIGLAIALVMFLLLSF 236 Query: 241 LTGVWFARKEV 251 LT VWFARKEV Sbjct: 237 LTAVWFARKEV 247 >C5D4G4.1 C5D4G4_9BACI Lantibiotic ABC transporter (Permease) Length = 248 Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 104/252 (41%), Positives = 139/252 (55%), Gaps = 4/252 (1%) Query: 1 MLNIFQSEHLKYRRSFSVKXXXXXXXXXXXXXXXXXXXXPKGQSLPGDLFLGMVFNWWPF 60 MLN+ QSE+LKY+R+F+ K P S + F VFNWWP Sbjct: 1 MLNMIQSENLKYKRTFTKKIVYISPLFFILYAIITM---PSIHS-KYNYFEYTVFNWWPL 56 Query: 61 IFVPLGTALLCALAEVRERKAGNYRGLRLHNVRPGALWFGKIMVLAYYMXXXXXXXXXXX 120 IF+PLGTAL+ +L+ +RE+K+GNYR LR H++ +WF KI+V+A Y Sbjct: 57 IFMPLGTALISSLSAMREKKSGNYRVLRCHDISIAHMWFSKIIVVALYTLLSSIELILLL 116 Query: 121 XXXXXXXXXXXXPVEKVVVASLLTWXXXXXXXXXXXXXXXWKGMPASIGLGVAGMFAGVI 180 V+ ASL W G SI + V G+ GV+ Sbjct: 117 FILKFFLPSSITSSVVVIQASLAVWVTSLAYIPIGLFFAERFGTAISIIVNVLGIVIGVV 176 Query: 181 AAPGPNWLYVPWSWALRLMCPVAGVHPNGVPLESGNPLLEPSVIPVGIAVSLLFFAASSW 240 AP P W+Y+PWSW +RLM P+ GVHPNG PLE+G+PLL PSVIP+GIAVS++FF S+ Sbjct: 177 MAPEPYWIYIPWSWGMRLMSPIVGVHPNGTPLETGSPLLNPSVIPLGIAVSIVFFIMLSF 236 Query: 241 LTGVWFARKEVK 252 T +WF++KEV Sbjct: 237 ATAIWFSKKEVN 248 >C3J690.1 C3J690_9BACI Putative SpaE Length = 248 Score = 191 bits (485), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 107/252 (42%), Positives = 136/252 (53%), Gaps = 4/252 (1%) Query: 1 MLNIFQSEHLKYRRSFSVKXXXXXXXXXXXXXXXXXXXXPKGQSLPGDLFLGMVFNWWPF 60 MLN+FQSE LKY+R+F+ K P S F VFNWWP Sbjct: 1 MLNMFQSERLKYKRTFAKKLVFIAPLFFVLYAMITM---PTMNS-TRHYFEYTVFNWWPL 56 Query: 61 IFVPLGTALLCALAEVRERKAGNYRGLRLHNVRPGALWFGKIMVLAYYMXXXXXXXXXXX 120 IFVP+GTAL+ +L+ RE+K+GN + LR ++ LW+ KI V+AYYM Sbjct: 57 IFVPIGTALIASLSVSREKKSGNDKALRCLDISIVRLWWSKIAVIAYYMLLSTIELIVLL 116 Query: 121 XXXXXXXXXXXXPVEKVVVASLLTWXXXXXXXXXXXXXXXWKGMPASIGLGVAGMFAGVI 180 VV ASL+ W GM ASI + V G+ GV+ Sbjct: 117 VLLKWFLPNSLSSATVVVFASLVIWLTSLAYIPIGLFIAERFGMAASIMVSVIGLAFGVV 176 Query: 181 AAPGPNWLYVPWSWALRLMCPVAGVHPNGVPLESGNPLLEPSVIPVGIAVSLLFFAASSW 240 P WL++PWSW +R+MCP+ GVHPNGVPLE GNPLL+PSVIP G+A++L F S+ Sbjct: 177 MTAQPYWLFIPWSWGMRMMCPIVGVHPNGVPLEKGNPLLDPSVIPTGLAIALAIFLLLSF 236 Query: 241 LTGVWFARKEVK 252 LT WFARKEV Sbjct: 237 LTAAWFARKEVH 248 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.141 0.480 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,245,486,291 Number of extensions: 46982600 Number of successful extensions: 133392 Number of sequences better than 1.0e-05: 65 Number of HSP's gapped: 133381 Number of HSP's successfully gapped: 65 Length of query: 252 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 120 Effective length of database: 1,817,122,223 Effective search space: 218054666760 Effective search space used: 218054666760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)