BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0024.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5D4G3.1 C5D4G3_9BACI Lantibiotic ABC transporter (Permease) 129 3e-28 C3J689.1 C3J689_9BACI Lantibiotic ABC transporter (Permease) 86 3e-15 B7YEV1.1 B7YEV1_9BACI Lantibiotic ABC transporter (Permease) 86 3e-15 B4BRA9.1 B4BRA9_9BACI Lantibiotic ABC transporter (Permease) 84 1e-14 Q5L385.1 Q5L385_GEOKA Lantibiotic ABC transporter (Permease) 82 4e-14 >C5D4G3.1 C5D4G3_9BACI Lantibiotic ABC transporter (Permease) Length = 262 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 113/259 (43%) Query: 3 LRLLFSDWLKTKRTPVRWLTGAAILGYPALLLWYFARPARTAELPYEIHQAFFQSASXXX 62 L++L S+W+KTKRT +R + A + YP +LWYF++ +I+ FF+ + Sbjct: 4 LQVLSSEWVKTKRTSIRLIVFAIPIAYPVCMLWYFSKYNDPLSWQMKIYSGFFEVLTVSL 63 Query: 63 XXXXXXXXXXXXXQEENAGHFNGLLGQSAPRTLIYLSKLLQLVMLVTVFLFGSMLVLLSG 122 QEE AG+F GLL R +Y+SKL+ L++L + +F + ++L G Sbjct: 64 PVIVSLLTGLISHQEEKAGNFVGLLAAPVSRAQLYVSKLVLLILLAIMDIFLATSLMLLG 123 Query: 123 MRYLLHIEQPGIGIFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182 M Y+LH++ G+F+ Sbjct: 124 MDYILHVDNVYCGLFLQGALLSVIGSLILFSMHIFISFAYGMGASIAIGGGGFLISAIIG 183 Query: 183 TTSIGDAIWPCVPWSWXXXXXXXXXXXXXXXXXXEGFVLSGFLRDELFRGLVPACAVFML 242 T +GD IWP +PW+W +G S EL +G+ P+ F+L Sbjct: 184 ATVVGDDIWPFIPWAWAVRLSKIPILLMPEAKLADGIQPSELFLQELVKGITPSIICFVL 243 Query: 243 AAVCSILWFCRWEGRKSYE 261 + I+WF RWEG KSYE Sbjct: 244 VTIGGIMWFNRWEGNKSYE 262 >C3J689.1 C3J689_9BACI Lantibiotic ABC transporter (Permease) Length = 262 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/259 (23%), Positives = 98/259 (37%) Query: 3 LRLLFSDWLKTKRTPVRWLTGAAILGYPALLLWYFARPARTAELPYEIHQAFFQSASXXX 62 LR+L S+W+KTKRT +R + + Y ++WYF+ +I+Q FF+ + Sbjct: 4 LRILSSEWIKTKRTAIRMMIIITPIIYSLFMVWYFSHYRTPMFWQVKIYQGFFEVMAVSL 63 Query: 63 XXXXXXXXXXXXXQEENAGHFNGLLGQSAPRTLIYLSKLLQLVMLVTVFLFGSMLVLLSG 122 QEE AG F +L + Y+ KL LV + + + +V+L G Sbjct: 64 PIIISLLTGLMSYQEEKAGSFMNILTGPVSKIKWYVGKLTLLVFITFADILLATMVMLFG 123 Query: 123 MRYLLHIEQPGIGIFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182 M+Y+L++ + +F+ Sbjct: 124 MKYVLNVAPIHVHLFLQGALLSIVGSLILFSMHLFISFAFGMGASIAVGSGGFLISALIG 183 Query: 183 TTSIGDAIWPCVPWSWXXXXXXXXXXXXXXXXXXEGFVLSGFLRDELFRGLVPACAVFML 242 TS+GD IW +PWSW G L L+ G A F++ Sbjct: 184 ATSLGDHIWSYIPWSWAVRLSQFPILMMPEVKQTLGGQLLNSYSLSLWEGTAYALLGFII 243 Query: 243 AAVCSILWFCRWEGRKSYE 261 + +WF RWEG K +E Sbjct: 244 VTIIGSIWFHRWEGNKPHE 262 >B7YEV1.1 B7YEV1_9BACI Lantibiotic ABC transporter (Permease) Length = 262 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/259 (23%), Positives = 98/259 (37%) Query: 3 LRLLFSDWLKTKRTPVRWLTGAAILGYPALLLWYFARPARTAELPYEIHQAFFQSASXXX 62 LR+L S+W+KTKRT +R + + Y ++WYF+ +I+Q FF+ + Sbjct: 4 LRILSSEWIKTKRTAIRMMIIITPIIYSLFMVWYFSHYRTPMFWQVKIYQGFFEVMAVSL 63 Query: 63 XXXXXXXXXXXXXQEENAGHFNGLLGQSAPRTLIYLSKLLQLVMLVTVFLFGSMLVLLSG 122 QEE AG F +L + Y+ KL LV + + + +V+L G Sbjct: 64 PIIISLLTGLMSYQEEKAGSFMNILTGPVSKIKWYVGKLTLLVFITFADILLATMVMLFG 123 Query: 123 MRYLLHIEQPGIGIFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182 M+Y+L++ + +F+ Sbjct: 124 MKYVLNVAPIHVHLFLQGALLSIVGSLILFSMHLFISFAFGMGASIAVGSGGFLISALIG 183 Query: 183 TTSIGDAIWPCVPWSWXXXXXXXXXXXXXXXXXXEGFVLSGFLRDELFRGLVPACAVFML 242 TS+GD IW +PWSW G L L+ G A F++ Sbjct: 184 ATSLGDHIWSYIPWSWAVRLSQFPILMMPEVKQTLGGQLLNSYSLSLWEGTAYALLGFII 243 Query: 243 AAVCSILWFCRWEGRKSYE 261 + +WF RWEG K +E Sbjct: 244 VTIIGSIWFHRWEGNKPHE 262 >B4BRA9.1 B4BRA9_9BACI Lantibiotic ABC transporter (Permease) Length = 262 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/259 (22%), Positives = 98/259 (37%) Query: 3 LRLLFSDWLKTKRTPVRWLTGAAILGYPALLLWYFARPARTAELPYEIHQAFFQSASXXX 62 LRLL S+W+KTKRT +R + + Y ++WYF+ + +I+Q FF+ + Sbjct: 4 LRLLSSEWIKTKRTAIRMMVIITPIIYSLFMVWYFSHYRTSTFWQMKIYQGFFEVMAVSL 63 Query: 63 XXXXXXXXXXXXXQEENAGHFNGLLGQSAPRTLIYLSKLLQLVMLVTVFLFGSMLVLLSG 122 QEE AG F +L + Y+ KL L+ + + + +++L G Sbjct: 64 PIIISLLTGLMSYQEEKAGSFMNILAGPVSKVQWYVGKLTLLIFIACADILLATILMLFG 123 Query: 123 MRYLLHIEQPGIGIFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182 M+Y+L + +F+ Sbjct: 124 MKYVLKVAHIHYQLFLQGAMLSIVGSLILFSLHLFISFAFGMGASIAVGSGGFLISALIG 183 Query: 183 TTSIGDAIWPCVPWSWXXXXXXXXXXXXXXXXXXEGFVLSGFLRDELFRGLVPACAVFML 242 TS+GD +W +PW+W G L L+ G+ A F++ Sbjct: 184 ATSLGDHVWSYIPWAWAVRLSQFPILMMPEVKQALGVQLLSSFSLSLWEGIAYALLSFII 243 Query: 243 AAVCSILWFCRWEGRKSYE 261 + +WF RWEG + +E Sbjct: 244 VTIIGSIWFHRWEGNQPHE 262 >Q5L385.1 Q5L385_GEOKA Lantibiotic ABC transporter (Permease) Length = 262 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 58/259 (22%), Positives = 98/259 (37%) Query: 3 LRLLFSDWLKTKRTPVRWLTGAAILGYPALLLWYFARPARTAELPYEIHQAFFQSASXXX 62 LRLL S+W+KTKRT +R + + Y ++WYF+ + +I+Q FF+ + Sbjct: 4 LRLLSSEWIKTKRTAIRMMVIITPIIYSLFMVWYFSHYRTSTFWQMKIYQGFFEVMAVSL 63 Query: 63 XXXXXXXXXXXXXQEENAGHFNGLLGQSAPRTLIYLSKLLQLVMLVTVFLFGSMLVLLSG 122 QEE AG F +L + Y+ KL L+ + + + +++L G Sbjct: 64 PIIISLLTGLMSYQEEKAGSFMNILTGPVSKVQWYVGKLTLLIFIACADILLATILMLFG 123 Query: 123 MRYLLHIEQPGIGIFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182 M+Y+L + +F+ Sbjct: 124 MKYVLKVAHIHYQLFLQGAMLSIVGSLILFSLHLFISFAFGMGASIAVGSGGFLISALIG 183 Query: 183 TTSIGDAIWPCVPWSWXXXXXXXXXXXXXXXXXXEGFVLSGFLRDELFRGLVPACAVFML 242 TS+GD +W +PW+W G L L+ G+ A F++ Sbjct: 184 ATSLGDHVWSYIPWAWAVRLSQFPILMMPEVKQTLGAQLLSSFSLSLWEGIAYALLSFII 243 Query: 243 AAVCSILWFCRWEGRKSYE 261 + +WF RWEG + +E Sbjct: 244 VTIIGSIWFHRWEGNQPHE 262 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.477 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,074,228,019 Number of extensions: 29110907 Number of successful extensions: 91387 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 91390 Number of HSP's successfully gapped: 10 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)