BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0023.p (228 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q188S4.1 Q188S4_CLOD6 Putative lantibiotic resistance two-compon... 331 4e-89 C4G9Z7.1 C4G9Z7_9FIRM Putative uncharacterized protein 310 8e-83 B6FZM6.1 B6FZM6_9CLOT Putative uncharacterized protein 298 3e-79 B1QQV4.1 B1QQV4_CLOBO DNA-binding response regulator 267 6e-70 C3KXI3.1 C3KXI3_CLOB6 DNA-binding response regulator 266 8e-70 >Q188S4.1 Q188S4_CLOD6 Putative lantibiotic resistance two-component response regulator Length = 230 Score = 331 bits (848), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 157/229 (68%), Positives = 188/229 (82%), Gaps = 2/229 (0%) Query: 1 VSRILIIDDEVALVLLLTDELQAKGHEVLAAYDGNEGVRLADSEPDLVILDIMMPGMNGF 60 +S+ILIIDDE+ LV+LL DEL+AKGHEVL AYDG G+ L+ EPDL+ILDIMMP MNGF Sbjct: 1 MSKILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIELSKQEPDLIILDIMMPKMNGF 60 Query: 61 EVCRSIRDRVSCPIIFLSARQSEADRVRGLTLGGDDYVIKPFGLRELLARIEANLRREER 120 EVC++IRD V CPIIFLSA+QSE D+++GLT GGDDYV KPFGLREL+ARIEANLRRE+R Sbjct: 61 EVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120 Query: 121 SR--QKPQQQSRLRFGKLELSLKERLVSVAGEPVALTRREYEITELLALHGGQVFSREHI 178 S+ + ++S L FGKL L +KER + + G+ + LT+ EY+I ELLALH GQVFSRE I Sbjct: 121 SQYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQI 180 Query: 179 YEKVWGYDAEGDASTVVEHVKKIRAKLAAADPSGDYISTVWGIGYKWTN 227 YEKVWG D+EGD+STVVE VKKIRAK +A P +YISTVWGIGYKW Sbjct: 181 YEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGYKWNK 229 >C4G9Z7.1 C4G9Z7_9FIRM Putative uncharacterized protein Length = 230 Score = 310 bits (793), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 146/227 (64%), Positives = 180/227 (79%), Gaps = 2/227 (0%) Query: 1 VSRILIIDDEVALVLLLTDELQAKGHEVLAAYDGNEGVRLADSEPDLVILDIMMPGMNGF 60 +S+IL+IDDEV L++LL +EL+A+GH VL AY G EG+ LA EPDL++LDIMMP MNGF Sbjct: 1 MSKILLIDDEVELLMLLKNELEARGHRVLTAYRGEEGIALARQEPDLILLDIMMPDMNGF 60 Query: 61 EVCRSIRDRVSCPIIFLSARQSEADRVRGLTLGGDDYVIKPFGLRELLARIEANLRREER 120 EVCR+IRD++ CPI+FLSA+Q+E+D++ LTLGGDD++ KPFGLRELLARIEANLRRE+R Sbjct: 61 EVCRAIRDQILCPILFLSAKQAESDKIHALTLGGDDFISKPFGLRELLARIEANLRREQR 120 Query: 121 SRQKPQQQSRLR--FGKLELSLKERLVSVAGEPVALTRREYEITELLALHGGQVFSREHI 178 S++ Q+ R R F L L L E V + + L+RREYEI ELLAL GQVFSREHI Sbjct: 121 SQENHHQKKRTRLYFADLSLDLLEHRVRIGDTEIPLSRREYEIVELLALRAGQVFSREHI 180 Query: 179 YEKVWGYDAEGDASTVVEHVKKIRAKLAAADPSGDYISTVWGIGYKW 225 YE+VWG DAEGDA TVVEH++KIR K A +YISTVWGIGY+W Sbjct: 181 YERVWGCDAEGDAYTVVEHIRKIRKKFAQVSSEKEYISTVWGIGYRW 227 >B6FZM6.1 B6FZM6_9CLOT Putative uncharacterized protein Length = 233 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 141/228 (61%), Positives = 174/228 (76%), Gaps = 2/228 (0%) Query: 1 VSRILIIDDEVALVLLLTDELQAKGHEVLAAYDGNEGVRLADSEPDLVILDIMMPGMNGF 60 +S ILIIDDE LV LL +++ GHEVL A+DG EG+ + PDL++LDIMMP ++GF Sbjct: 4 LSTILIIDDEKDLVKLLGKKIKDNGHEVLVAFDGEEGIEKSKLNPDLILLDIMMPKIDGF 63 Query: 61 EVCRSIRDRVSCPIIFLSARQSEADRVRGLTLGGDDYVIKPFGLRELLARIEANLRREER 120 EVC+ IRD V CPIIFLSARQSE D++RG LGGDDY+ KPFGLRELLA+IEANLRRE+R Sbjct: 64 EVCQKIRDNVVCPIIFLSARQSETDKIRGFNLGGDDYITKPFGLRELLAKIEANLRREKR 123 Query: 121 SRQKPQQQSR--LRFGKLELSLKERLVSVAGEPVALTRREYEITELLALHGGQVFSREHI 178 S+ ++ R L FG L L +K+R+V V G+ + LT+ EYEI ELLAL+ GQVF++E I Sbjct: 124 SQYLNEENKRRKLYFGNLSLDIKDRVVEVCGKDIPLTKTEYEIVELLALNAGQVFTKEQI 183 Query: 179 YEKVWGYDAEGDASTVVEHVKKIRAKLAAADPSGDYISTVWGIGYKWT 226 YEKVWGYD GD +TVVE +KKIR K + D + YISTVWGIGYKW Sbjct: 184 YEKVWGYDKGGDNTTVVEMIKKIRRKFSTIDDTEQYISTVWGIGYKWN 231 >B1QQV4.1 B1QQV4_CLOBO DNA-binding response regulator Length = 229 Score = 267 bits (682), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 119/225 (52%), Positives = 169/225 (75%), Gaps = 2/225 (0%) Query: 1 VSRILIIDDEVALVLLLTDELQAKGHEVLAAYDGNEGVRLADSEPDLVILDIMMPGMNGF 60 + +ILI+DDE +V + D Q +G+ V+ A +G E + D + D+++LDIMMP ++GF Sbjct: 2 LEKILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCDKDIDIILLDIMMPNIDGF 61 Query: 61 EVCRSIRDRVSCPIIFLSARQSEADRVRGLTLGGDDYVIKPFGLRELLARIEANLRREER 120 ++C+ IRD+VSCPIIFLSARQSE D+++GL++GGDDY++KPF ++EL AR++A+LRRE+R Sbjct: 62 QICQKIRDKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 121 SRQKPQQQSRLRFGKLELSLKERLVSVAGEPVALTRREYEITELLALHGGQVFSREHIYE 180 +S++ FGKL L + R V E + T +E++I ELLALH QVFS+E IYE Sbjct: 122 V--PLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPQQVFSKEQIYE 179 Query: 181 KVWGYDAEGDASTVVEHVKKIRAKLAAADPSGDYISTVWGIGYKW 225 KVWGYDAEGDA+TV EH+KKIRAK + S ++I+TVWG+GY+W Sbjct: 180 KVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRW 224 >C3KXI3.1 C3KXI3_CLOB6 DNA-binding response regulator Length = 229 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 118/225 (52%), Positives = 169/225 (75%), Gaps = 2/225 (0%) Query: 1 VSRILIIDDEVALVLLLTDELQAKGHEVLAAYDGNEGVRLADSEPDLVILDIMMPGMNGF 60 + +ILI+DDE +V + D Q +G+ ++ A +G E + D + D+++LDIMMP ++GF Sbjct: 2 LEKILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCDKDIDIILLDIMMPNIDGF 61 Query: 61 EVCRSIRDRVSCPIIFLSARQSEADRVRGLTLGGDDYVIKPFGLRELLARIEANLRREER 120 ++C+ IRD+VSCPIIFLSARQSE D+++GL++GGDDY++KPF ++EL AR++A+LRRE+R Sbjct: 62 QICQKIRDKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 121 SRQKPQQQSRLRFGKLELSLKERLVSVAGEPVALTRREYEITELLALHGGQVFSREHIYE 180 +S++ FGKL L + R V E + T +E++I ELLALH QVFS+E IYE Sbjct: 122 V--PLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYE 179 Query: 181 KVWGYDAEGDASTVVEHVKKIRAKLAAADPSGDYISTVWGIGYKW 225 KVWGYDAEGDA+TV EH+KKIRAK + S ++I+TVWG+GY+W Sbjct: 180 KVWGYDAEGDANTVAEHIKKIRAKFIKINASLNHIATVWGVGYRW 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,334,447,345 Number of extensions: 52288601 Number of successful extensions: 268547 Number of sequences better than 1.0e-05: 28611 Number of HSP's gapped: 233591 Number of HSP's successfully gapped: 28789 Length of query: 228 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 97 Effective length of database: 1,826,543,238 Effective search space: 177174694086 Effective search space used: 177174694086 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)