BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0018.p (445 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4Q5.1 B3K4Q5_9BACI Major facilitator superfamily MFS_1 208 9e-52 C1PCY4.1 C1PCY4_BACCO Major facilitator superfamily MFS_1 206 4e-51 Q2B9X1.1 Q2B9X1_9BACI Putative uncharacterized protein 202 6e-50 B4AI21.1 B4AI21_BACPU Permease 199 5e-49 B3KLT0.1 B3KLT0_9BACI Putative uncharacterized protein 184 2e-44 >B3K4Q5.1 B3K4Q5_9BACI Major facilitator superfamily MFS_1 Length = 416 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 123/404 (30%), Positives = 215/404 (53%), Gaps = 22/404 (5%) Query: 19 KRSFYYLWGSQTISNIADIIYILSITVLVFSSSNSLMQTTLIPLFRLSAQVVSGLVAPII 78 ++SF YLW Q ++N D+IYI+ + ++ + S M +IP + + +SG AP++ Sbjct: 3 RKSFRYLWIGQALANSGDLIYIVGLMAMIHGITGSAMLMAMIPFITTTTRFISGSFAPVL 62 Query: 79 LGRFRLTRILLFSQLGQFIIFTLLLLYLRAVPEQRSFLFIFM-LVFGMSFLDGWTNPARN 137 + ++ L +L+ SQ+G+ ++ LL++ A+ EQ + +++ + VF +S LDGW PA + Sbjct: 63 MDKYSLKSLLVSSQIGKTVVLFLLMVTCYALGEQEATVYVILGFVFLISLLDGWAAPASH 122 Query: 138 ALIPRLAAGEGLMRANGLTAVSDQVVKCAGWALSGIIVAWLGTLNTLLIASCCYLVAATV 197 A++PRL L +AN A+ DQ+++ GWA+ G++VA LG + + + L AA Sbjct: 123 AMLPRLVDAAELTKANSFVAIVDQMIQLGGWAVGGLLVAVLGGSSVIGLTFALSLAAAVF 182 Query: 198 TSFIRD-----PLDHQKSGXXXXXXXXXXXXXXXKGGYWKELGEGWRIIWHNRRIRSLMI 252 I D P +K+ KG + + EGW +IW +R++ + Sbjct: 183 MKLIEDRHEAAPEPKEKT-------------RVSKG---RSIQEGWALIWKQPSLRAIHV 226 Query: 253 VDSIDTIGGTSWLGVFILAYVTQVLHKDASWWGFMNASFFSGTIXXXXXXXXXXKRLQKN 312 + ++T+ G W+ I YV LH++ +WWG++NASFF G + + +N Sbjct: 227 IYVLETMAGVIWIAAIIYVYVADALHREEAWWGYINASFFLGLMLGGLFGMRGGGLIDRN 286 Query: 313 SFLYMLGALFVYVLITVVFALNTIPAAALVLFAVSGLPVQMAGIIRRTLLQTSAPAAQLP 372 +++ + F L+T+ F L ++P AL+ A G+ Q+ + +T LQ S LP Sbjct: 287 IRKFVICSSFGISLMTLGFGLTSVPWLALMFSAGFGVFEQLKSVSLQTTLQRSVSVHLLP 346 Query: 373 KVMAGIDVLTNLAFGLSLLFLGWYADRFGMVQVYLLAAAMTTIA 416 KV A + +L FGLS L G+ D +G+ Y++AAA+ I+ Sbjct: 347 KVYAAQSAMVSLVFGLSTLLFGFITDEYGVRTTYIIAAAVLFIS 390 >C1PCY4.1 C1PCY4_BACCO Major facilitator superfamily MFS_1 Length = 400 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 120/394 (30%), Positives = 213/394 (54%), Gaps = 20/394 (5%) Query: 29 QTISNIADIIYILSITVLVFSSSNSLMQTTLIPLFRLSAQVVSGLVAPIILGRFRLTRIL 88 Q ++N D+ YI+++ LV+S + S + +L+P VSGL+API+L RF L ++L Sbjct: 4 QCLANAGDVFYIVALISLVYSVTGSTLFVSLVPFTNTLTMFVSGLIAPILLDRFSLKKVL 63 Query: 89 LFSQLGQFIIFTLLLLYLRAVPEQRSFLFIFMLVFGMSFLDGWTNPARNALIPRLAAGEG 148 ++SQL + ++ L +Y + + +F+LV +SF DGW +PAR+++IPRL + Sbjct: 64 VYSQLIKTLLLMALAVYAMVFIQPATITLLFLLVGLISFFDGWASPARSSMIPRLVPRDQ 123 Query: 149 LMRANGLTAVSDQVVKCAGWALSGIIVAWLGTLNTLLIASCCYLVAATVTSFIRDPLD-- 206 L++AN L +++DQ ++ GWAL GII++ G+ I Y+++ + FI D Sbjct: 124 LVKANSLVSITDQSIQLGGWALGGIILSSFGSTGMFWITFSVYMLSTLMMGFIVDRKHAN 183 Query: 207 -HQKSGXXXXXXXXXXXXXXXKGGYWKELGEGWRIIWHNRRIRSLMIVDSIDTIGGTSWL 265 +K G K + EGW+II+ NR +R++ ++ +T+ T+WL Sbjct: 184 WQEKQG----------------NALRKAMVEGWQIIFKNRALRTIHLLMVFETVASTAWL 227 Query: 266 GVFILAYVTQVLHKDASWWGFMNASFFSGTIXXXXXXXXXXKRLQKNSFLYMLGALFVYV 325 + ++ + L +WWG++N +FF G + ++ L ++ + Sbjct: 228 SAVLYVFIRERLKTGVAWWGYLNTAFFIGML-LAGFVGYRSALIKNRPILTVVTGSGMVC 286 Query: 326 LITVVFALNTIPAAALVLFAVSGLPVQMAGIIRRTLLQTSAPAAQLPKVMAGIDVLTNLA 385 L T+ F NT+P AL+L A +G+ Q+ GI + +LQT+A LPK+ + + L L Sbjct: 287 LTTLFFGFNTVPWVALLLIAANGIFDQLKGISLQVILQTTADDRMLPKIYSTQNALVTLV 346 Query: 386 FGLSLLFLGWYADRFGMVQVYLLAAAMTTIAVLI 419 FGLS + G +DRF ++ ++ A+ + I+ +I Sbjct: 347 FGLSTVAAGAVSDRFNIIFTFIGASVLLMISFVI 380 >Q2B9X1.1 Q2B9X1_9BACI Putative uncharacterized protein Length = 397 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 119/383 (31%), Positives = 202/383 (52%), Gaps = 19/383 (4%) Query: 19 KRSFYYLWGSQTISNIADIIYILSITVLVFSSSNSLMQTTLIPLFRLSAQVVSGLVAPII 78 +SF LW Q+++N+ D+ YI+ + +++S + S + L+P ++ + VSG ++P++ Sbjct: 3 SKSFRSLWIGQSLANLGDVFYIVGLISILYSVTGSPVYLALLPFLNMAGRAVSGAISPLM 62 Query: 79 LGRFRLTRILLFSQLGQFIIFTLL--LLYLRAVPEQRSFLFIFMLVFGMSFLDGWTNPAR 136 L +++L +L+ SQ+ + + +L L+L++ PE LF+ +L+F ++F DGW PA Sbjct: 63 LNKYKLKSMLVSSQVSKTLALFILSGWLWLQSSPE---ILFVLVLIFVIAFFDGWALPAS 119 Query: 137 NALIPRLAAGEGLMRANGLTAVSDQVVKCAGWALSGIIVAWLGTLNTLLIASCCYLVAAT 196 +A++PRL E LM+AN A+ ++ ++ GWAL GI+ A G N + + Y V++ Sbjct: 120 DAMLPRLVEKEELMKANSFLALLNESIQLGGWALGGILTAAAGGQNVIWLTLAFYAVSSL 179 Query: 197 VTSFIRDPLDHQKSGXXXXXXXXXXXXXXXKGGYWKELGEGWRIIWHNRRIRSLMIVDSI 256 + I D Q + K L EGW IW +RS +V I Sbjct: 180 MMQLINDKTPFQSN--------------TEKQSTVNVLLEGWISIWTQPVLRSFHVVILI 225 Query: 257 DTIGGTSWLGVFILAYVTQVLHKDASWWGFMNASFFSGTIXXXXXXXXXXKRLQKNSFLY 316 + I W+ + +V +VL +WWG++N SFF G I +KN L Sbjct: 226 EAIANVVWIAAILYVFVAEVLKAGEAWWGYINTSFFMGLILGGVICKKFSSIFEKNMKLT 285 Query: 317 MLGALFVYVLITVVFALNTIPAAALVLFAVSGLPVQMAGIIRRTLLQTSAPAAQLPKVMA 376 ++ A F ++T++F N++ AAL+L +SGL Q+ GII T +Q A +LPKV + Sbjct: 286 LISASFGVAIVTLLFGANSLAWAALLLVFLSGLIHQIKGIILYTYIQKEVAAEELPKVFS 345 Query: 377 GIDVLTNLAFGLSLLFLGWYADR 399 L ++AF LS + G A+ Sbjct: 346 AQHTLVSMAFALSTVLFGAMAEN 368 >B4AI21.1 B4AI21_BACPU Permease Length = 399 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 116/393 (29%), Positives = 213/393 (54%), Gaps = 24/393 (6%) Query: 20 RSFYYLWGSQTISNIADIIYILSITVLVFSSSNSLMQTTLIPLFRLSAQVVSGLVAPIIL 79 F+Y GS+++ ++DI+++++IT +++ + S+ L PL R Q+++GL++P++ Sbjct: 3 NKFWYYTGSKSLLMLSDILFVMTITFVIYQDTQSVAYAALFPLIRTLCQLLAGLISPVLA 62 Query: 80 GRFRLTRILLFS---QLGQFIIFTLLLLYLRAVPEQRSFLFIFMLVFGMSFLDGWTNPAR 136 ++ R+L + +LG I+FT + Q+ +++F + +S G+ +P Sbjct: 63 DHYQAGRLLKWVPLLRLGMLIVFTAQFHFF-----QQHMIWLFGALILISITGGFISPLL 117 Query: 137 NALIPRLAAGEGLMRANGLTAVSDQVVKCAGWALSGIIVAWLGTLNTLLIASCCYLVAAT 196 A++P L L++AN ++ Q V+ AG++ +G++V ++G + I C ++ + Sbjct: 118 QAIMPMLVPENQLVKANSTASIFQQTVQIAGYSFTGMLVLFIGPFYLMWIT--CLMIVLS 175 Query: 197 VTSFIR-DPLDHQKSGXXXXXXXXXXXXXXXKGGYWKELGEGWRIIWHNRRIRSLMIVDS 255 FI PL Q+ K +GW IIW N+ IR+L +D Sbjct: 176 YLFFIPLFPLLKQED-------------TVRKANKMNSFKDGWTIIWTNKTIRTLTFMDV 222 Query: 256 IDTIGGTSWLGVFILAYVTQVLHKDASWWGFMNASFFSGTIXXXXXXXXXXKRLQKNSFL 315 + I G W+G LA+VTQ L++ WWGF+NA++++G I + +QK L Sbjct: 223 CENIAGAVWIGAITLAFVTQDLNESEDWWGFINAAYYTGAIIGGLLAAWMSQFIQKQLLL 282 Query: 316 YMLGALFVYVLITVVFALNTIPAAALVLFAVSGLPVQMAGIIRRTLLQTSAPAAQLPKVM 375 +M F+Y ++T+V++LN++P AL+L + G Q+ + ++T+LQT P L KV Sbjct: 283 FMAAGSFIYAVLTIVYSLNSLPWLALLLCILMGPAYQIRDVSQQTILQTETPVQDLSKVY 342 Query: 376 AGIDVLTNLAFGLSLLFLGWYADRFGMVQVYLL 408 + VL++++ GLS+ F+G AD +G VYLL Sbjct: 343 SAHYVLSSVSVGLSIFFVGLIADAYGARSVYLL 375 >B3KLT0.1 B3KLT0_9BACI Putative uncharacterized protein Length = 413 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 117/396 (29%), Positives = 204/396 (51%), Gaps = 15/396 (3%) Query: 22 FYYLWGSQTISNIADIIYILSITVLVFSSSNSLMQTTLIPLFRLSAQVVSGLVAPIILGR 81 F Y W + + ++A ++YI+ +T ++ S S L PLF A+ +G AP+++ + Sbjct: 6 FLYYWTAHSSISLAGVVYIMVLTTFMYQESGSAFIAALFPLFNAVARFAAGFTAPLVMEK 65 Query: 82 FRLTRILLFSQLGQFIIFTLLLLYLRAVPEQRSFLFIFMLVFGMSFLDGWTNPARNALIP 141 F +++LL Q+ + ++ T L++ + Q L IF+L ++F +GW NP +++P Sbjct: 66 FGFSKLLLRLQVLKALLLTTLVVLFPYISSQVVILCIFILF--IAFTEGWGNPLIQSMVP 123 Query: 142 RLAAGEGLMRANGLTAVSDQVVKCAGWALSGIIVAWLGTLNTLLIASCCYLVAATVTSF- 200 R+ A + L++AN +V+ Q ++ AG+ +G +V G + TL+++ C L+ +V F Sbjct: 124 RMVAPDRLVKANSSLSVTSQSLQIAGYTFTGFLVIRYGHMPTLIMS--CTLIWLSVLCFW 181 Query: 201 IRDPLDHQKSGXXXXXXXXXXXXXXXKGGYWKELGEGWRIIWHNRRIRSLMIVDSIDTIG 260 I K+ W+ + EGW +W +R + I+D ++ I Sbjct: 182 IAARFMQSKAPAAAGRGKPS----------WEVIREGWFYLWRIPTLRIVTIMDMVEGIA 231 Query: 261 GTSWLGVFILAYVTQVLHKDASWWGFMNASFFSGTIXXXXXXXXXXKRLQKNSFLYMLGA 320 GT W+G L YV +VLH+ +WWGF+NAS++ G I +QKN M Sbjct: 232 GTIWVGAITLVYVKEVLHQGEAWWGFINASYYVGAILGGLLMLLLSSFIQKNLIPCMAAG 291 Query: 321 LFVYVLITVVFALNTIPAAALVLFAVSGLPVQMAGIIRRTLLQTSAPAAQLPKVMAGIDV 380 V+ L+T+ + LN+IP AL+L G Q+ + ++T LQ+S LPK+ A D+ Sbjct: 292 SAVFSLLTLWYGLNSIPVVALILCIAMGPAYQLRDVAQQTALQSSVDQDMLPKIYASRDI 351 Query: 381 LTNLAFGLSLLFLGWYADRFGMVQVYLLAAAMTTIA 416 L + +S+ +G AD G+ VY+ A I+ Sbjct: 352 LLSSVTSVSIAVIGLIADTLGIRMVYIAGAICIAIS 387 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.141 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,284,031,028 Number of extensions: 85273556 Number of successful extensions: 333175 Number of sequences better than 1.0e-05: 539 Number of HSP's gapped: 333420 Number of HSP's successfully gapped: 545 Length of query: 445 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 306 Effective length of database: 1,751,175,118 Effective search space: 535859586108 Effective search space used: 535859586108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 133 (55.8 bits)