BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0011.p (195 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGX9.1 B3KGX9_9BACI ATP-dependent Clp protease proteolytic sub... 295 1e-78 B1DM42.1 B1DM42_9BACL ATP-dependent Clp protease proteolytic sub... 290 4e-77 Q9K888.1 CLPP2_BACHD ATP-dependent Clp protease proteolytic subu... 287 4e-76 C1PSU8.1 C1PSU8_ALIAC ATP-dependent Clp protease proteolytic sub... 276 5e-73 B7DRN3.1 B7DRN3_9BACL ATP-dependent Clp protease proteolytic sub... 276 5e-73 >B3KGX9.1 B3KGX9_9BACI ATP-dependent Clp protease proteolytic subunit Length = 235 Score = 295 bits (756), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 139/193 (72%), Positives = 162/193 (83%) Query: 3 MSVIPYVIEQTSRGERSYDIYSRLLKDRIVFVGAAIDDQLANSIIAQLLFLAADEPDKDI 62 M+++PYV+EQT+RGERSYDIYSRLLKDRIVFVGAAIDD +ANSIIAQLLFLAA++P+KDI Sbjct: 43 MNIVPYVVEQTNRGERSYDIYSRLLKDRIVFVGAAIDDAIANSIIAQLLFLAAEDPEKDI 102 Query: 63 QMYINSPGGSTTAGFGIYDTMQVIKPQVSTICTXXXXXXXXXXXXXXXTGKRYALPNSEI 122 MYINSPGGS +AGFGIYDTMQ+IKPQV+TICT GKR ALPNSEI Sbjct: 103 HMYINSPGGSVSAGFGIYDTMQIIKPQVNTICTGFAASYGAILLLAGAKGKRLALPNSEI 162 Query: 123 MIHQPHGGAQGQASDIAISARRILQIREKVVQISAERTGQPAEKVAKDMDRDYFMSAQEA 182 MIHQP GG QGQA+DIAI+A+RIL+ REK+ I +ERTGQ E+V KDM+RDYFMSA+EA Sbjct: 163 MIHQPLGGVQGQATDIAITAKRILKTREKLAHIISERTGQSVERVEKDMERDYFMSAEEA 222 Query: 183 LEYGIIDKVITKL 195 EYGIID ++TKL Sbjct: 223 KEYGIIDDIVTKL 235 >B1DM42.1 B1DM42_9BACL ATP-dependent Clp protease proteolytic subunit Length = 194 Score = 290 bits (743), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 135/189 (71%), Positives = 161/189 (85%) Query: 4 SVIPYVIEQTSRGERSYDIYSRLLKDRIVFVGAAIDDQLANSIIAQLLFLAADEPDKDIQ 63 S IPYV+EQ++RGERSYDIYSRLLKDRIVF+G+AIDDQ+ANSI+AQLLFLAA++PDK+I Sbjct: 3 SFIPYVVEQSNRGERSYDIYSRLLKDRIVFLGSAIDDQVANSIVAQLLFLAAEDPDKEIS 62 Query: 64 MYINSPGGSTTAGFGIYDTMQVIKPQVSTICTXXXXXXXXXXXXXXXTGKRYALPNSEIM 123 +YINSPGGSTTAGF IYDTMQ IKP+V TIC GKR+ALP+SE+M Sbjct: 63 LYINSPGGSTTAGFAIYDTMQYIKPEVHTICVGMAASFAAILLLSGAKGKRFALPSSEVM 122 Query: 124 IHQPHGGAQGQASDIAISARRILQIREKVVQISAERTGQPAEKVAKDMDRDYFMSAQEAL 183 IHQPHGGAQGQASDIAISA+RIL R ++ +I+A+RTGQP EK+ KDMDRDYF+SAQEAL Sbjct: 123 IHQPHGGAQGQASDIAISAKRILDTRARLNRIAADRTGQPLEKIEKDMDRDYFLSAQEAL 182 Query: 184 EYGIIDKVI 192 +YGIID+V+ Sbjct: 183 DYGIIDQVV 191 >Q9K888.1 CLPP2_BACHD ATP-dependent Clp protease proteolytic subunit 2 EC=3.4.21.92 Length = 194 Score = 287 bits (734), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 134/190 (70%), Positives = 157/190 (82%) Query: 6 IPYVIEQTSRGERSYDIYSRLLKDRIVFVGAAIDDQLANSIIAQLLFLAADEPDKDIQMY 65 +PYVIEQ+ ERSYDIYSRLLKDRIVF+GAAIDDQ+ANSI+AQLLFL A+ P KDI +Y Sbjct: 5 VPYVIEQSGLSERSYDIYSRLLKDRIVFLGAAIDDQIANSIVAQLLFLEAENPKKDIYLY 64 Query: 66 INSPGGSTTAGFGIYDTMQVIKPQVSTICTXXXXXXXXXXXXXXXTGKRYALPNSEIMIH 125 INSPGGST+AGF IYDTMQ +KP + TICT GKR+ALPNSEIMIH Sbjct: 65 INSPGGSTSAGFAIYDTMQFVKPSIHTICTGMAASFAAILLLAGTKGKRFALPNSEIMIH 124 Query: 126 QPHGGAQGQASDIAISARRILQIREKVVQISAERTGQPAEKVAKDMDRDYFMSAQEALEY 185 QP GGAQGQASD+AI+A+RIL IREK+V +++ERTGQ EKVAKDMDRDYFMSA+EALEY Sbjct: 125 QPSGGAQGQASDLAITAKRILGIREKLVTVTSERTGQSPEKVAKDMDRDYFMSAEEALEY 184 Query: 186 GIIDKVITKL 195 GI+D++IT + Sbjct: 185 GIVDQIITSV 194 >C1PSU8.1 C1PSU8_ALIAC ATP-dependent Clp protease proteolytic subunit ClpP EC=3.4.21.92 Length = 192 Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 132/192 (68%), Positives = 154/192 (80%) Query: 3 MSVIPYVIEQTSRGERSYDIYSRLLKDRIVFVGAAIDDQLANSIIAQLLFLAADEPDKDI 62 MS+IPYVIEQTSRGERSYDIYSRLLKDRI+F+G IDD +AN+++AQLLFLAAD+PDKDI Sbjct: 1 MSLIPYVIEQTSRGERSYDIYSRLLKDRIIFLGTPIDDDVANAVVAQLLFLAADDPDKDI 60 Query: 63 QMYINSPGGSTTAGFGIYDTMQVIKPQVSTICTXXXXXXXXXXXXXXXTGKRYALPNSEI 122 QMYINSPGGS +AG IYDTMQ IKP VST+C GKRYALPNSE+ Sbjct: 61 QMYINSPGGSVSAGLAIYDTMQHIKPDVSTMCVGMAASMAAVLLAAGAKGKRYALPNSEV 120 Query: 123 MIHQPHGGAQGQASDIAISARRILQIREKVVQISAERTGQPAEKVAKDMDRDYFMSAQEA 182 MIHQP GGA+GQASDI I AR IL+ RE++ +I AERTGQP E+VA+D DRD FMSA+EA Sbjct: 121 MIHQPLGGARGQASDIEIHARHILKTRERLNRILAERTGQPLERVAQDTDRDNFMSAEEA 180 Query: 183 LEYGIIDKVITK 194 YG+ID+VI + Sbjct: 181 KAYGLIDEVIYR 192 >B7DRN3.1 B7DRN3_9BACL ATP-dependent Clp protease proteolytic subunit Length = 192 Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 132/192 (68%), Positives = 154/192 (80%) Query: 3 MSVIPYVIEQTSRGERSYDIYSRLLKDRIVFVGAAIDDQLANSIIAQLLFLAADEPDKDI 62 MS+IPYVIEQTSRGERSYDIYSRLLKDRI+F+G IDD +AN+++AQLLFLAAD+PDKDI Sbjct: 1 MSLIPYVIEQTSRGERSYDIYSRLLKDRIIFLGTPIDDDVANAVVAQLLFLAADDPDKDI 60 Query: 63 QMYINSPGGSTTAGFGIYDTMQVIKPQVSTICTXXXXXXXXXXXXXXXTGKRYALPNSEI 122 QMYINSPGGS +AG IYDTMQ IKP VST+C GKRYALPNSE+ Sbjct: 61 QMYINSPGGSVSAGLAIYDTMQHIKPDVSTMCVGMAASMAAVLLAAGAKGKRYALPNSEV 120 Query: 123 MIHQPHGGAQGQASDIAISARRILQIREKVVQISAERTGQPAEKVAKDMDRDYFMSAQEA 182 MIHQP GGA+GQASDI I AR IL+ RE++ +I AERTGQP E+VA+D DRD FMSA+EA Sbjct: 121 MIHQPLGGARGQASDIEIHARHILKTRERLNRILAERTGQPLERVAQDTDRDNFMSAEEA 180 Query: 183 LEYGIIDKVITK 194 YG+ID+VI + Sbjct: 181 KAYGLIDEVIYR 192 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 950,357,515 Number of extensions: 31231488 Number of successful extensions: 87426 Number of sequences better than 1.0e-05: 2757 Number of HSP's gapped: 84144 Number of HSP's successfully gapped: 2758 Length of query: 195 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 67 Effective length of database: 1,854,806,283 Effective search space: 124272020961 Effective search space used: 124272020961 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)