BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0004.p (390 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K965.1 B3K965_9BACI Fibronectin type III domain protein 77 2e-12 A9U7K0.1 A9U7K0_PHYPA Predicted protein (Fragment) 71 2e-10 B8FLG8.1 B8FLG8_DESAA Regulator of chromosome condensation RCC1 70 3e-10 B1HN10.1 B1HN10_LYSSC Putative uncharacterized protein 70 5e-10 A3IF73.1 A3IF73_9BACI Putative uncharacterized protein 68 2e-09 >B3K965.1 B3K965_9BACI Fibronectin type III domain protein Length = 1280 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/243 (27%), Positives = 93/243 (38%), Gaps = 33/243 (13%) Query: 53 SDSMRYRHLFLKKDGTVW----RDNGELQEFEPIQ--------NLHDIVQIAE----NYA 96 S + Y + L ++GTVW DNGEL IQ L D+ IA + A Sbjct: 139 SGGLAYHGMALSENGTVWTWGKNDNGELGNGTTIQQNSPVLVAGLSDVTAIAAGGYYSLA 198 Query: 97 LQKDGTVWTWPAAFAEK---NPPXXXXXXXXXXXLTNIQTLKHEQRSTLAIDKQSRLWFW 153 L+ DGTVW W + + LT++ + +LAI + +W W Sbjct: 199 LKSDGTVWAWGVNGSGELGDGTTTDRHVPVQVAGLTDVMAIAAGGSHSLAIKQDGTVWAW 258 Query: 154 GGTVTGYSDGWTYADHPDPVLITSIRNVKDAFVVE----HSLIVQTL-------DNKVYS 202 G G T PV +RN++ V HSL V DN Sbjct: 259 GNNTYGTLGDGTRTHRTRPV---QVRNLQHIVAVAGGGYHSLAVDRAGNVWSWGDNSQQQ 315 Query: 203 TSVARDAMPANPSFVLLASDINNIKNGGRHMIMQKKDGSLWGWGVNKNSELGYGDYEFMH 262 + +A P V + I GG H + KKDG++WGWG N ++G G Y Sbjct: 316 LGLNSNASSLIPVPVPGIEHVREISAGGFHSVAMKKDGTVWGWGYNSGGQIGDGTYNNTR 375 Query: 263 DTP 265 P Sbjct: 376 GIP 378 >A9U7K0.1 A9U7K0_PHYPA Predicted protein (Fragment) Length = 279 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 6/118 (5%) Query: 272 IAVSLNGENVPLTAGVITRNGQNFVPLRSLFDKLGAEIGFDGTSKLATVTRTNPSLPALK 331 I + LNG + + + +NG F+PLR +F+K+ A++ ++ K TV + + K Sbjct: 166 IGIKLNGSFISVVPKPVIKNGTTFIPLRGVFEKMDAKVTWNQQKKQVTVVKGDK-----K 220 Query: 332 ISVNAKNGQTTLNGQAVTLENKPF-TVNGTLYLPLRFISEKLGATVEWLPKEERISIT 388 I + + +NG+AV L + P+ T G+ Y+PLRFISE +GA V W +SIT Sbjct: 221 ILLTIGSRAAYVNGEAVKLNSAPYVTPAGSTYVPLRFISETIGAQVVWDQTNYLVSIT 278 >B8FLG8.1 B8FLG8_DESAA Regulator of chromosome condensation RCC1 Length = 1525 Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 128/309 (41%), Gaps = 48/309 (15%) Query: 57 RYRH-LFLKKDGTVW----RDNGELQEFEPIQNL--------HDIVQIAE----NYALQK 99 R H L LK DGTVW D +L + I L +IV +A + AL Sbjct: 75 RLDHSLALKGDGTVWVWGRNDYNQLGLGDDINRLAPEQAPVVSNIVSVAAGRLFSLALAS 134 Query: 100 DGTVWTWPAAFAEK---NPPXXXXXXXXXXXLTNIQTLKHEQRSTLAIDKQSRLWFWGGT 156 DG++W W + + L+++ + LA + +W G Sbjct: 135 DGSLWAWGGNYYGQLGMGDNDNRLTPSKTPGLSDVAAIAGGDYHALAATQSGEVWAMGRN 194 Query: 157 VTGYSDGWTYADHPD-PVLITSIRNVKDAFVVEHSLIVQTLDNKVYS----------TSV 205 G G+T DH D PV + + NVK E + D V++ T + Sbjct: 195 DHGQL-GFT-GDHADAPVQVAGLSNVKSVAAGEFFSLALKNDGTVWAWGNNESAQLGTGI 252 Query: 206 ARDAMPANPSFVLLASDINNIKNGGRHMIMQKKDGSLWGWGVNKNSELGYGDYEFMHDTP 265 A +A+ A P+ + + S+I I G RH + +DGS+W WG N + +LG+GD+E TP Sbjct: 253 AGEAV-ATPAPIAVLSNITAIAAGRRHAMALAEDGSVWAWGANGSGQLGFGDFE----TP 307 Query: 266 VPVQKPIAVSLNGENVPLTAGVITRNGQNFVPLRSLFDKLGAEIGFDGTSKLATVTRTNP 325 + P VS + + +G F L D + G +G +L T ++ Sbjct: 308 ---KAPGRVSSLADVTAIASGW-------FHSLALTSDGVLWAWGNNGDGRLGTDATSDQ 357 Query: 326 SLPALKISV 334 SLPA S+ Sbjct: 358 SLPAQVSSI 366 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/259 (23%), Positives = 102/259 (39%), Gaps = 44/259 (16%) Query: 58 YRHLFLKKDGTVW----RDNGEL-----QEFEPIQ--NLHDIVQIAE----NYALQKDGT 102 Y L + G VW D+G+L P+Q L ++ +A + AL+ DGT Sbjct: 177 YHALAATQSGEVWAMGRNDHGQLGFTGDHADAPVQVAGLSNVKSVAAGEFFSLALKNDGT 236 Query: 103 VWTW----PAAFAEKNPPXXXXXXXXXXXLTNIQTLKHEQRSTLAIDKQSRLWFWGGTVT 158 VW W A L+NI + +R +A+ + +W WG + Sbjct: 237 VWAWGNNESAQLGTGIAGEAVATPAPIAVLSNITAIAAGRRHAMALAEDGSVWAWGANGS 296 Query: 159 GYSDGWTYADHPDPVLITSIRNVKDAFVVE----HSLIVQT----------LDNKVYSTS 204 G + D P + ++ D + HSL + + D ++ + + Sbjct: 297 GQ---LGFGDFETPKAPGRVSSLADVTAIASGWFHSLALTSDGVLWAWGNNGDGRLGTDA 353 Query: 205 VARDAMPANPSFVLLASDINNIKNGGRHMIMQKKDGSLWGWGVNKNSELGYGDYEFMHDT 264 + ++PA S + S+ + G RH + DGS+W WG N +LG E + T Sbjct: 354 TSDQSLPAQVSSI---SNAVSFAGGQRHSLAIAADGSVWSWGGNAYGQLG---VESL--T 405 Query: 265 PVPVQKPIAVSLNGENVPL 283 P V P+ +GE+ L Sbjct: 406 PASVLTPVHTLYSGEDFHL 424 Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 45/246 (18%) Query: 61 LFLKKDGTVWR--DNG----------ELQEFEP--IQNLHDIVQIA--ENYALQ--KDGT 102 L LK DG++W DNG + F P + L +IA +N+AL DG+ Sbjct: 994 LALKTDGSLWSWGDNGTGQLGLGLGQSVNVFTPTKVDALPPAAKIAAGDNHALALAPDGS 1053 Query: 103 VWTW------------PAAFAEKNPPXXXXXXXXXXXLTNIQTLKHEQRSTLAIDKQSRL 150 VW+W ++ KN P ++N+ + +LA+ + L Sbjct: 1054 VWSWGYNSDGQLGLGSSGTYSTKNRPQKINA------ISNVAAIACGGSHSLAVARDGSL 1107 Query: 151 WFWGGTVTGYSDGWTYADHPDPVLITSIRNVKDAFVVEHSLIVQTLDNKVYSTSVARDAM 210 W WG G P + +I NV E+ + T D V+S D Sbjct: 1108 WSWGYNYYGQLGLGDNYSKTTPQKVNAISNVAAIAAGEYYSLALTRDGSVWSWGDNSDGQ 1167 Query: 211 PA--------NPSFVLLASDINNIKNGGRHMIMQKKDGSLWGWGVNKNSELGYGDYEFMH 262 P V + S++ I G H + +DGS+W WG N +LG D + Sbjct: 1168 LGLGDNEDRNTPQKVEVLSNVAAIAAGEDHSLALTRDGSVWSWGRNSRGQLGLDDND-DR 1226 Query: 263 DTPVPV 268 +TP PV Sbjct: 1227 NTPQPV 1232 >B1HN10.1 B1HN10_LYSSC Putative uncharacterized protein Length = 643 Score = 69.7 bits (169), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 71/124 (57%), Gaps = 5/124 (4%) Query: 266 VPVQKPIAVSLNGENVPLTAGVITRNGQNFVPLRSLFDKLGAEIGFDGTSKLATVTRTNP 325 + ++ +++++NGE + + ++ ++ +P+R+L++ +GA + ++ ++ A+ TR N Sbjct: 47 IQIKNNVSITINGETISVYDPILNKSDFLLLPMRALYEAIGANVDWNKETQTASATR-NG 105 Query: 326 SLPALKISVNAKNGQTTLNGQAVTLENKPFTVNGTLYLPLRFISEKLGATVEWLPKEERI 385 + LKI + ++GQ V ++ PF Y+PLRF+SE V+W P+ + + Sbjct: 106 KIVDLKID----SMMALVDGQEVVMDVAPFMYKDRTYMPLRFVSENFDGNVQWDPETQSV 161 Query: 386 SITM 389 ITM Sbjct: 162 DITM 165 >A3IF73.1 A3IF73_9BACI Putative uncharacterized protein Length = 643 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 71/125 (56%), Gaps = 7/125 (5%) Query: 266 VPVQKPIAVSLNGENVPLTAGVITRNGQNFVPLRSLFDKLGAEIGFDGTSKLATVTRTNP 325 + ++ +++++NGE + + ++ ++ +P+R+L++ +GA + ++ ++ A+ TR N Sbjct: 47 IQIKNNVSITINGETISVYDPILNKSDFLLLPMRALYEAIGANVDWNKETQTASATR-NG 105 Query: 326 SLPALKISVNAKNGQTTL-NGQAVTLENKPFTVNGTLYLPLRFISEKLGATVEWLPKEER 384 + LKI + T L +GQ V ++ PF Y+PLRF+SE V W P+ + Sbjct: 106 KIVDLKI-----DSMTALVDGQEVAMDVAPFMHQDRTYMPLRFVSENFDGNVHWDPETQS 160 Query: 385 ISITM 389 + ITM Sbjct: 161 VDITM 165 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,375,442,785 Number of extensions: 99903101 Number of successful extensions: 253243 Number of sequences better than 1.0e-05: 120 Number of HSP's gapped: 252943 Number of HSP's successfully gapped: 140 Length of query: 390 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 252 Effective length of database: 1,760,596,133 Effective search space: 443670225516 Effective search space used: 443670225516 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)