BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0002.p (207 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7Z0D8.1 A7Z0D8_BACA2 Dgk 286 8e-76 B4APC6.1 B4APC6_BACPU Deoxyguanosine kinase 284 4e-75 A8FAE0.1 A8FAE0_BACP2 Deoxyguanosine kinase EC=2.7.1.113 283 9e-75 P37530.1 DGK_BACSU Deoxyguanosine kinase EC=2.7.1.113 280 4e-74 Q65PK5.1 Q65PK5_BACLD Dgk 276 6e-73 >A7Z0D8.1 A7Z0D8_BACA2 Dgk Length = 207 Score = 286 bits (732), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 135/207 (65%), Positives = 167/207 (80%) Query: 1 MKHAPFIAVEGPIGAGKTTLATMLAGELQLPVIKEIVEENPFLDKFYQNMDDWSFQLEMF 60 M APFIAVEGPIGAGKTTLATML+ EL P+I EIVE+NP+LDKFY N+++WSFQLEMF Sbjct: 1 MNRAPFIAVEGPIGAGKTTLATMLSEELGFPMINEIVEDNPYLDKFYDNIEEWSFQLEMF 60 Query: 61 FLCNRYKQLEDTVNQYINKGKPVISDYHIYKNLIFGERTLKGTKREKYREIYHVLTDDLP 120 FLC+RYKQLEDT Y+ +G+PV+SDYHIYKN+IF ERTL G K EKY++IYH+LT DLP Sbjct: 61 FLCHRYKQLEDTDRDYLKQGQPVLSDYHIYKNVIFAERTLHGQKLEKYKQIYHLLTHDLP 120 Query: 121 KPDIILYIRADLDTLLARIAKRGRQFEEDIAPAYLQQLIEDYDAAMASLALTEPSTVIVT 180 KP+II+YI+A L TLL RI KRGR FE++I YL++LI DYD A+ L +P ++T Sbjct: 121 KPNIIVYIKASLPTLLQRIEKRGRPFEKNIEHQYLERLITDYDTAIRQLQEEDPDISVLT 180 Query: 181 IDGNQVDFVENKEDFTRVASQLKELMK 207 IDG+ DFV NK D+ R+A Q+KEL+K Sbjct: 181 IDGDTEDFVLNKTDYERIARQVKELIK 207 >B4APC6.1 B4APC6_BACPU Deoxyguanosine kinase Length = 207 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 128/204 (62%), Positives = 162/204 (79%) Query: 1 MKHAPFIAVEGPIGAGKTTLATMLAGELQLPVIKEIVEENPFLDKFYQNMDDWSFQLEMF 60 M APFIAVEGPIGAGKTTLATMLA E Q P++KEIVEENPFLDKFY++M+ WSFQLEMF Sbjct: 1 MYPAPFIAVEGPIGAGKTTLATMLAKEFQFPLVKEIVEENPFLDKFYEDMEQWSFQLEMF 60 Query: 61 FLCNRYKQLEDTVNQYINKGKPVISDYHIYKNLIFGERTLKGTKREKYREIYHVLTDDLP 120 FLCNR+KQLE Y+N+ +P+++DYH+YKN+IF ERTL +KYR+IYH+LTDDLP Sbjct: 61 FLCNRFKQLESIQENYVNQQQPIVTDYHVYKNMIFAERTLSKKHMDKYRKIYHLLTDDLP 120 Query: 121 KPDIILYIRADLDTLLARIAKRGRQFEEDIAPAYLQQLIEDYDAAMASLALTEPSTVIVT 180 KP+ I+YI+A L TLL RI RGR FEEDI PAYL+ LIEDY+ A+ L T+P I+T Sbjct: 121 KPNAIIYIKASLPTLLERIQMRGRSFEEDIEPAYLKTLIEDYELAIEHLKQTDPGLPIIT 180 Query: 181 IDGNQVDFVENKEDFTRVASQLKE 204 I+G+ DFV +++D+ ++ +KE Sbjct: 181 IEGDHTDFVSSQQDYQQIVQNIKE 204 >A8FAE0.1 A8FAE0_BACP2 Deoxyguanosine kinase EC=2.7.1.113 Length = 207 Score = 283 bits (723), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 128/204 (62%), Positives = 161/204 (78%) Query: 1 MKHAPFIAVEGPIGAGKTTLATMLAGELQLPVIKEIVEENPFLDKFYQNMDDWSFQLEMF 60 M APFIAVEGPIGAGKTTLATMLA E Q P++KEIVEENPFLDKFY++M+ WSFQLEMF Sbjct: 1 MYPAPFIAVEGPIGAGKTTLATMLAKEFQFPLVKEIVEENPFLDKFYEDMEQWSFQLEMF 60 Query: 61 FLCNRYKQLEDTVNQYINKGKPVISDYHIYKNLIFGERTLKGTKREKYREIYHVLTDDLP 120 FLCNR+KQLE Y+N +P+++DYH+YKN+IF ERTL +KYR+IYH+LTDDLP Sbjct: 61 FLCNRFKQLESIQENYVNHQQPIVTDYHVYKNMIFAERTLSKKHMDKYRKIYHLLTDDLP 120 Query: 121 KPDIILYIRADLDTLLARIAKRGRQFEEDIAPAYLQQLIEDYDAAMASLALTEPSTVIVT 180 KP+ I+YI+A L TLL RI RGR FEEDI PAYL+ LIEDY+ A+ L T+P I+T Sbjct: 121 KPNAIIYIKASLPTLLERIQMRGRSFEEDIDPAYLKTLIEDYELAIEHLKQTDPGLPIIT 180 Query: 181 IDGNQVDFVENKEDFTRVASQLKE 204 I+G+ DFV +++D+ ++ +KE Sbjct: 181 IEGDHTDFVSSQQDYQQIVQNIKE 204 >P37530.1 DGK_BACSU Deoxyguanosine kinase EC=2.7.1.113 Length = 207 Score = 280 bits (717), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 128/206 (62%), Positives = 164/206 (79%) Query: 1 MKHAPFIAVEGPIGAGKTTLATMLAGELQLPVIKEIVEENPFLDKFYQNMDDWSFQLEMF 60 M APFIA+EGPIGAGKTTLATML+ + P+I EIVE+NP+LDKFY N+ +WSFQLEMF Sbjct: 1 MNTAPFIAIEGPIGAGKTTLATMLSQKFGFPMINEIVEDNPYLDKFYDNIKEWSFQLEMF 60 Query: 61 FLCNRYKQLEDTVNQYINKGKPVISDYHIYKNLIFGERTLKGTKREKYREIYHVLTDDLP 120 FLC+RYKQLEDT + ++ KG+PVI+DYHIYKN+IF ERTL + EKY++IYH+LTDDLP Sbjct: 61 FLCHRYKQLEDTSDHFLKKGQPVIADYHIYKNVIFAERTLSPHQLEKYKKIYHLLTDDLP 120 Query: 121 KPDIILYIRADLDTLLARIAKRGRQFEEDIAPAYLQQLIEDYDAAMASLALTEPSTVIVT 180 KP+ I+YI+A L TLL RI KRGR FE+ I +YL+QLI DY+ A+ L +P ++T Sbjct: 121 KPNFIIYIKASLPTLLHRIEKRGRPFEKKIETSYLEQLISDYEVAIKQLQEADPELTVLT 180 Query: 181 IDGNQVDFVENKEDFTRVASQLKELM 206 +DG+ DFV NK DF R+A+ +KEL+ Sbjct: 181 VDGDSKDFVLNKSDFERIAAHVKELI 206 >Q65PK5.1 Q65PK5_BACLD Dgk Length = 207 Score = 276 bits (707), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 130/207 (62%), Positives = 165/207 (79%) Query: 1 MKHAPFIAVEGPIGAGKTTLATMLAGELQLPVIKEIVEENPFLDKFYQNMDDWSFQLEMF 60 M APFIAVEGPIGAGKTTLA+ML+ +L L ++KEIVEENPFLDKFY D+WSFQLEMF Sbjct: 1 MNTAPFIAVEGPIGAGKTTLASMLSEKLSLSLVKEIVEENPFLDKFYDEKDEWSFQLEMF 60 Query: 61 FLCNRYKQLEDTVNQYINKGKPVISDYHIYKNLIFGERTLKGTKREKYREIYHVLTDDLP 120 FLCNRYKQLEDT +Y++ PV+SDYHIYKNLIF ERTL+G K EKYR+IY +LT+DLP Sbjct: 61 FLCNRYKQLEDTEKKYLHHHMPVVSDYHIYKNLIFAERTLEGKKLEKYRKIYQLLTEDLP 120 Query: 121 KPDIILYIRADLDTLLARIAKRGRQFEEDIAPAYLQQLIEDYDAAMASLALTEPSTVIVT 180 KP++I+YIRA L TLL RI KRGR FE+++ YL+QLI DY+AA+ ++P ++ Sbjct: 121 KPNVIIYIRASLPTLLERIKKRGRPFEQEMDKQYLEQLINDYEAAIKQFKESDPPIPVIE 180 Query: 181 IDGNQVDFVENKEDFTRVASQLKELMK 207 I+G+Q DFV ++ F R+A Q+KE ++ Sbjct: 181 INGDQEDFVISEAVFNRIADQVKEYIE 207 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,180,385,287 Number of extensions: 48982673 Number of successful extensions: 302725 Number of sequences better than 1.0e-05: 652 Number of HSP's gapped: 302078 Number of HSP's successfully gapped: 652 Length of query: 207 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 78 Effective length of database: 1,845,385,268 Effective search space: 143940050904 Effective search space used: 143940050904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)