BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0566.0001.p (217 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJL2.1 B1DJL2_9BACL Deoxynucleoside kinase 369 e-100 P37529.1 DCK_BACSU Deoxyadenosine/deoxycytidine kinase EC=2.7.1.... 343 7e-93 A7Z0D7.1 A7Z0D7_BACA2 DcK EC=2.7.1.76 331 3e-89 Q65PK6.1 Q65PK6_BACLD Deoxyadenosine/deoxycytidine kinase 327 5e-88 Q2B0X4.1 Q2B0X4_9BACI Deoxynucleoside kinase 321 2e-86 >B1DJL2.1 B1DJL2_9BACL Deoxynucleoside kinase Length = 224 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 168/206 (81%), Positives = 188/206 (91%) Query: 6 IPDNAIITVAGTVGVGKSTLTAALAEQLNFQTSLEQVDHNPYLEKFYHDFERWSFHLQIY 65 IP NA+IT+AGTVGVGKSTLT+ALAE+L F+TSLEQV+HNPYLEKFYHDFERWSFHLQIY Sbjct: 5 IPSNALITIAGTVGVGKSTLTSALAERLGFRTSLEQVEHNPYLEKFYHDFERWSFHLQIY 64 Query: 66 FLAERFKEQKKMFELGGGFVQDRSIYEDTGIFAKMHADQGTMSKTDYDTYTSLYEAMVMT 125 FLAERFKEQK +FE GGGFVQDRSIYEDTGIFAKMHADQGTM+ TDY TYTSL+EAMVMT Sbjct: 65 FLAERFKEQKAIFEAGGGFVQDRSIYEDTGIFAKMHADQGTMTATDYATYTSLFEAMVMT 124 Query: 126 PYFPHPDVLIYIEGSLPSILTRINERGREMEIQTDVSYWEHMHGRYSQWIGEFNACPVLR 185 PYFPHPDVLIY+EGSLPSI+ RI RGREMEIQT+ +YWE MH RY+ WIGEFNACPVLR Sbjct: 125 PYFPHPDVLIYLEGSLPSIVNRITARGREMEIQTERAYWERMHERYAAWIGEFNACPVLR 184 Query: 186 LNIDDYDVNDPASMSEILKQVGAAIG 211 LNID+YDV+DPAS+ I+ Q+ + IG Sbjct: 185 LNIDEYDVHDPASLEGIIAQISSVIG 210 >P37529.1 DCK_BACSU Deoxyadenosine/deoxycytidine kinase EC=2.7.1.76 EC=2.7.1.74 Length = 217 Score = 343 bits (880), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 159/211 (75%), Positives = 180/211 (85%), Gaps = 1/211 (0%) Query: 1 MNAYNIPDNAIITVAGTVGVGKSTLTAALAEQLNFQTSLEQVDHNPYLEKFYHDFERWSF 60 M ++IP N+IITVAGTVGVGKSTLT LA++L F+TSLE+VDHNPYLEKFYHDFERWSF Sbjct: 1 MKEHHIPKNSIITVAGTVGVGKSTLTKTLAKRLGFKTSLEEVDHNPYLEKFYHDFERWSF 60 Query: 61 HLQIYFLAERFKEQKKMFELGGGFVQDRSIYEDTGIFAKMHADQGTMSKTDYDTYTSLYE 120 HLQIYFLAERFKEQK +FE GGGFVQDRSIYEDTGIFAKMHAD+GTMSK DY TYTSL+E Sbjct: 61 HLQIYFLAERFKEQKTIFEAGGGFVQDRSIYEDTGIFAKMHADKGTMSKVDYKTYTSLFE 120 Query: 121 AMVMTPYFPHPDVLIYIEGSLPSILTRINERGREMEIQTDVSYWEHMHGRYSQWIGEFNA 180 AMVMTPYFPHPDVLIY+EG L +IL RI +RGREME+QT SYWE MH RY WI FNA Sbjct: 121 AMVMTPYFPHPDVLIYLEGDLENILNRIEQRGREMELQTSRSYWEEMHTRYENWISGFNA 180 Query: 181 CPVLRLNIDDYD-VNDPASMSEILKQVGAAI 210 CPVL+L I+DYD +ND S+ I+ Q+ + I Sbjct: 181 CPVLKLRIEDYDLLNDENSIENIVDQIASVI 211 >A7Z0D7.1 A7Z0D7_BACA2 DcK EC=2.7.1.76 Length = 217 Score = 331 bits (848), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 155/212 (73%), Positives = 179/212 (84%), Gaps = 1/212 (0%) Query: 1 MNAYNIPDNAIITVAGTVGVGKSTLTAALAEQLNFQTSLEQVDHNPYLEKFYHDFERWSF 60 M +IP+NAIITVAGTVGVGKSTLT ALA++L F TSLE+VD NPYLEKFYHDFERWSF Sbjct: 1 MKDIHIPNNAIITVAGTVGVGKSTLTKALAKRLGFHTSLEEVDENPYLEKFYHDFERWSF 60 Query: 61 HLQIYFLAERFKEQKKMFELGGGFVQDRSIYEDTGIFAKMHADQGTMSKTDYDTYTSLYE 120 HLQIYFLAERFKEQK MFE GGGFVQDRSIYEDTGIFAKMHAD+GTMS TDY TYTSL+E Sbjct: 61 HLQIYFLAERFKEQKNMFESGGGFVQDRSIYEDTGIFAKMHADKGTMSLTDYTTYTSLFE 120 Query: 121 AMVMTPYFPHPDVLIYIEGSLPSILTRINERGREMEIQTDVSYWEHMHGRYSQWIGEFNA 180 AMVMTPYFPHPDVLIY+EG L +I+ RI +RGREME+QT+ SYWE M+ RY WI FNA Sbjct: 121 AMVMTPYFPHPDVLIYLEGDLENIINRIEKRGREMELQTNRSYWEEMYTRYEDWISGFNA 180 Query: 181 CPVLRLNIDDYDVN-DPASMSEILKQVGAAIG 211 CPVL++ I+DYD+ D S+ +++++ I Sbjct: 181 CPVLKVRIEDYDLEADEQSLEPLIEKISHVIN 212 >Q65PK6.1 Q65PK6_BACLD Deoxyadenosine/deoxycytidine kinase Length = 213 Score = 327 bits (838), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 152/213 (71%), Positives = 181/213 (84%), Gaps = 1/213 (0%) Query: 1 MNAYNIPDNAIITVAGTVGVGKSTLTAALAEQLNFQTSLEQVDHNPYLEKFYHDFERWSF 60 M+ Y+IP +AIITVAGTVGVGKSTLT LA++L F+TSLE+V +NPYLE FY DFERWSF Sbjct: 1 MSVYDIPKDAIITVAGTVGVGKSTLTKELAKRLGFKTSLEEVVNNPYLEAFYQDFERWSF 60 Query: 61 HLQIYFLAERFKEQKKMFELGGGFVQDRSIYEDTGIFAKMHADQGTMSKTDYDTYTSLYE 120 HLQI+FLAERFKEQK ++E GGGFVQDRSIYEDTGIFAKMHAD+GTMSK DY TYTSL+E Sbjct: 61 HLQIFFLAERFKEQKYIYESGGGFVQDRSIYEDTGIFAKMHADKGTMSKVDYKTYTSLFE 120 Query: 121 AMVMTPYFPHPDVLIYIEGSLPSILTRINERGREMEIQTDVSYWEHMHGRYSQWIGEFNA 180 AMVMTPYFP PDVL+Y+EG L +IL RI +RGREME+ TD SYWE M+ RY WI FNA Sbjct: 121 AMVMTPYFPRPDVLVYLEGDLETILDRIQKRGREMELLTDRSYWEEMYTRYENWISGFNA 180 Query: 181 CPVLRLNIDDYDV-NDPASMSEILKQVGAAIGR 212 CPV+R+NID+YD+ N+ AS+ I++++ AI R Sbjct: 181 CPVVRVNIDEYDLFNNSASLDPIIEKISEAIQR 213 >Q2B0X4.1 Q2B0X4_9BACI Deoxynucleoside kinase Length = 222 Score = 321 bits (823), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 148/217 (68%), Positives = 181/217 (83%), Gaps = 1/217 (0%) Query: 2 NAYNIPDNAIITVAGTVGVGKSTLTAALAEQLNFQTSLEQVDHNPYLEKFYHDFERWSFH 61 N Y IP N++IT+AGTVGVGKST+T ALA L F+TS E+VD NPYL+KFY DF+RWSFH Sbjct: 5 NKYEIPGNSVITIAGTVGVGKSTMTNALAGALGFRTSFEKVDTNPYLDKFYADFDRWSFH 64 Query: 62 LQIYFLAERFKEQKKMFELGGGFVQDRSIYEDTGIFAKMHADQGTMSKTDYDTYTSLYEA 121 LQIYFLAERFKEQK++FE GGGF+QDRSIYEDTGIFAKMH ++GTMS+ DY+TYTSL++A Sbjct: 65 LQIYFLAERFKEQKRIFEYGGGFIQDRSIYEDTGIFAKMHHEKGTMSQVDYETYTSLFDA 124 Query: 122 MVMTPYFPHPDVLIYIEGSLPSILTRINERGREMEIQTDVSYWEHMHGRYSQWIGEFNAC 181 MVMTPYFPHPD+LIY+EGS+ IL+RI ERGR ME QT VSYWE MH RY WI FNAC Sbjct: 125 MVMTPYFPHPDLLIYLEGSIEDILSRIQERGRPMEQQTPVSYWEEMHERYENWINTFNAC 184 Query: 182 PVLRLNIDDYDV-NDPASMSEILKQVGAAIGRAPVGK 217 PVLRLNI+DYD+ D AS+ +++++ + ++ + K Sbjct: 185 PVLRLNINDYDLMADGASIEPVIEKISVFLKQSQLLK 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,344,752,687 Number of extensions: 54688578 Number of successful extensions: 206559 Number of sequences better than 1.0e-05: 733 Number of HSP's gapped: 205771 Number of HSP's successfully gapped: 733 Length of query: 217 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 87 Effective length of database: 1,835,964,253 Effective search space: 159728890011 Effective search space used: 159728890011 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)