BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0016.p
         (151 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D6N5.1 B1D6N5_9BACL Transcriptional regulator, MerR family          147   4e-34
B3K8G1.1 B3K8G1_9BACI Regulatory protein MerR                         139   1e-31
B3KBS8.1 B3KBS8_9BACI Regulatory protein MerR                         137   3e-31
Q5WC37.1 Q5WC37_BACSK MerR family transcriptional activator           133   6e-30
C4LGY3.1 C4LGY3_CORK4 Transcriptional regulator, MerR family           92   1e-17

>B1D6N5.1 B1D6N5_9BACL Transcriptional regulator, MerR family
          Length = 168

 Score =  147 bits (370), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 91/114 (79%)

Query: 14  QGYSIKQTAELTGITEDTIRYYEKIGLLPRAQRKGNSHRIYSDNDIETMKLITCLKKTGM 73
           Q ++IKQTA+ TGI+EDT+RYYEKI LLPRA RK N HR+Y   DI T+ LI CLKKTGM
Sbjct: 5   QTFTIKQTADKTGISEDTLRYYEKIALLPRADRKDNGHRVYRQEDINTILLIYCLKKTGM 64

Query: 74  SLDDMRPYLDLSLDSNLSEYPELHEMILNHKQKILDQIASLQQIVDLIDSKIDQ 127
            L++MRP+L +S+D++ +EYPEL + + +H++ I+ QI SLQQIVD ID K+++
Sbjct: 65  PLEEMRPFLTVSVDADPAEYPELVKKLRDHRENIVSQITSLQQIVDFIDMKLEE 118


>B3K8G1.1 B3K8G1_9BACI Regulatory protein MerR
          Length = 133

 Score =  139 bits (349), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 65/113 (57%), Positives = 84/113 (74%)

Query: 16  YSIKQTAELTGITEDTIRYYEKIGLLPRAQRKGNSHRIYSDNDIETMKLITCLKKTGMSL 75
           +SIKQ +E TG+TED IRYYEKIGLLP  +RK N HR+Y   D E M+LITCLKKTGMSL
Sbjct: 5   FSIKQVSERTGLTEDAIRYYEKIGLLPSPKRKDNGHRVYHIEDAEIMELITCLKKTGMSL 64

Query: 76  DDMRPYLDLSLDSNLSEYPELHEMILNHKQKILDQIASLQQIVDLIDSKIDQN 128
           +DM+ Y+ L    N+   PEL+ M+ N++QKI  QI+ LQ+I+  ID K++QN
Sbjct: 65  EDMKAYVHLPFKENIQSVPELNAMLQNYRQKITGQISDLQRILRFIDDKLNQN 117


>B3KBS8.1 B3KBS8_9BACI Regulatory protein MerR
          Length = 121

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/114 (58%), Positives = 86/114 (75%)

Query: 14  QGYSIKQTAELTGITEDTIRYYEKIGLLPRAQRKGNSHRIYSDNDIETMKLITCLKKTGM 73
           Q ++IKQ AE TGI+EDTIRYYEKI LLP+A+RK N HR Y   DI  +K ITCLKKTGM
Sbjct: 4   QTFTIKQVAEQTGISEDTIRYYEKIMLLPQAERKENRHRFYRKEDIYRIKQITCLKKTGM 63

Query: 74  SLDDMRPYLDLSLDSNLSEYPELHEMILNHKQKILDQIASLQQIVDLIDSKIDQ 127
           SL+ MRP+L  S+DS+   YPEL + + + ++ I+ QI+SLQQIVD ID K+ +
Sbjct: 64  SLEAMRPFLAASVDSDSVNYPELVDQLRSQREHIMIQISSLQQIVDFIDIKLKE 117


>Q5WC37.1 Q5WC37_BACSK MerR family transcriptional activator
          Length = 123

 Score =  133 bits (334), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 85/113 (75%)

Query: 16  YSIKQTAELTGITEDTIRYYEKIGLLPRAQRKGNSHRIYSDNDIETMKLITCLKKTGMSL 75
           YSIKQ +E TG+TED IRYYEKIGLLP A+RK N HRIY D D E M+LI CLKKTGMSL
Sbjct: 4   YSIKQISEKTGLTEDAIRYYEKIGLLPYAKRKQNGHRIYGDEDKELMELIMCLKKTGMSL 63

Query: 76  DDMRPYLDLSLDSNLSEYPELHEMILNHKQKILDQIASLQQIVDLIDSKIDQN 128
           ++M+  + L +  N++  PEL   +L++K+KI+ QI  LQ+IV  ID+K++ +
Sbjct: 64  NEMKKIIKLPIKENINAIPELKRTLLDYKEKIMTQIQDLQRIVAFIDNKLESD 116


>C4LGY3.1 C4LGY3_CORK4 Transcriptional regulator, MerR family
          Length = 138

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 77/110 (70%), Gaps = 1/110 (0%)

Query: 16  YSIKQTAELTGITEDTIRYYEKIGLLPRAQRKGNSHRIYSDNDIETMKLITCLKKTGMSL 75
           YS ++ +E +GI+ DT+RYY KIGL+PR  R  N++R++ ++DI  ++ + CL++ GM +
Sbjct: 3   YSTREASEASGISVDTVRYYCKIGLVPRVMRDENNYRVFDEHDIAWLRGLRCLRECGMGI 62

Query: 76  DDMRPYLDLSLDSNLSEYPELHEMILNHKQKILDQIASLQQIVDLIDSKI 125
           D MR Y++L L+   S  P+  +++ + ++ + D+I++L+ ++  IDSK+
Sbjct: 63  DQMREYMELCLEGEGS-IPQRKDILRDQRRVVEDKISNLRDMLAFIDSKL 111


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 846,234,582
Number of extensions: 31557951
Number of successful extensions: 108079
Number of sequences better than 1.0e-05: 1834
Number of HSP's gapped: 108806
Number of HSP's successfully gapped: 1834
Length of query: 151
Length of database: 3,060,696,203
Length adjustment: 113
Effective length of query: 38
Effective length of database: 1,996,121,508
Effective search space: 75852617304
Effective search space used: 75852617304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)