BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0014.p
         (290 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KHH6.1 B3KHH6_9BACI Putative uncharacterized protein                200   1e-49
B1DBM6.1 B1DBM6_9BACL Putative uncharacterized protein                199   2e-49
A7GMM5.1 A7GMM5_BACCN Putative uncharacterized protein                179   2e-43
C2W5J4.1 C2W5J4_BACCE Putative uncharacterized protein                177   7e-43
C3BHP6.1 C3BHP6_9BACI Putative uncharacterized protein                177   8e-43

>B3KHH6.1 B3KHH6_9BACI Putative uncharacterized protein
          Length = 293

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 88/135 (65%), Positives = 111/135 (82%)

Query: 78  SRVAIIIDDFGNGMKGTDEMFALPVKFTVAVMPFLPTSVKDATRAHELGLDVLVHLPMEP 137
           +++A+IIDDFGN  KGT+EM  LPVK TVAVMPFLPTS KDA  AH+ G DV++H+PMEP
Sbjct: 60  NKLAVIIDDFGNDQKGTEEMLNLPVKITVAVMPFLPTSKKDAEAAHQQGHDVIIHMPMEP 119

Query: 138 RQGKPEWLGPGAVLTRMSDAEVRKSVEAALDNVPFAIGINNHMGSKVTGDERVMGIVLAV 197
           +QG+  WLGPGA+L+ ++D E+RK +E A+D+VP+A+GINNHMGSKVTGDERVM IVL V
Sbjct: 120 KQGRSSWLGPGAILSSLTDEEIRKRMEEAIDSVPYAVGINNHMGSKVTGDERVMSIVLDV 179

Query: 198 CKERGLFXXXXRQPY 212
           C+ERGLF    +  Y
Sbjct: 180 CRERGLFFVDSKTNY 194


>B1DBM6.1 B1DBM6_9BACL Putative uncharacterized protein
          Length = 309

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/152 (59%), Positives = 117/152 (76%), Gaps = 2/152 (1%)

Query: 67  RVQSAEDSARRS--RVAIIIDDFGNGMKGTDEMFALPVKFTVAVMPFLPTSVKDATRAHE 124
           RV +AE+   +S  + AI+IDDFGNGM GT+EM  LP KFTVA+MPF+PT+ KDA  AH 
Sbjct: 28  RVMAAEEEQAKSARQFAIVIDDFGNGMNGTEEMLQLPAKFTVAIMPFMPTTKKDAEEAHR 87

Query: 125 LGLDVLVHLPMEPRQGKPEWLGPGAVLTRMSDAEVRKSVEAALDNVPFAIGINNHMGSKV 184
           LG DV+VH+PMEP +G+  WLGPGA+   +SD E++K VE A+D+VP+A+G+NNHMGSK+
Sbjct: 88  LGHDVIVHMPMEPNKGQKNWLGPGAITADLSDEEIKKRVEDAIDDVPYAVGMNNHMGSKI 147

Query: 185 TGDERVMGIVLAVCKERGLFXXXXRQPYQLPV 216
           T DER+M IVL+VCKERGLF    R  ++  V
Sbjct: 148 TADERIMRIVLSVCKERGLFFLDSRTTFKTVV 179


>A7GMM5.1 A7GMM5_BACCN Putative uncharacterized protein
          Length = 256

 Score =  179 bits (455), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 103/130 (79%)

Query: 75  ARRSRVAIIIDDFGNGMKGTDEMFALPVKFTVAVMPFLPTSVKDATRAHELGLDVLVHLP 134
           A  ++VAI+IDDFGN MKGT EM +LP+  TVAVMPFLP++ +DA  AH+ G +V++H+P
Sbjct: 25  AHTNKVAIVIDDFGNNMKGTKEMLSLPIPLTVAVMPFLPSTKQDAIAAHKKGHEVIIHMP 84

Query: 135 MEPRQGKPEWLGPGAVLTRMSDAEVRKSVEAALDNVPFAIGINNHMGSKVTGDERVMGIV 194
           MEP  GK EWLGP A+ T +SD E++  +E A++ VP+AIG+NNHMGSKVT DER+M I+
Sbjct: 85  MEPINGKKEWLGPKAITTDLSDDEIKHRIEQAIEAVPYAIGMNNHMGSKVTADERIMRII 144

Query: 195 LAVCKERGLF 204
           L VCK+ GLF
Sbjct: 145 LTVCKKHGLF 154


>C2W5J4.1 C2W5J4_BACCE Putative uncharacterized protein
          Length = 253

 Score =  177 bits (450), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 77/130 (59%), Positives = 103/130 (79%)

Query: 75  ARRSRVAIIIDDFGNGMKGTDEMFALPVKFTVAVMPFLPTSVKDATRAHELGLDVLVHLP 134
           A  ++VAI+IDDFGN MKGT+ M +LP+  TVAVMPFLP++ +DA  AH+ G +V++H+P
Sbjct: 23  AHTNKVAIVIDDFGNNMKGTERMLSLPIPLTVAVMPFLPSTKQDAVAAHQKGHEVILHMP 82

Query: 135 MEPRQGKPEWLGPGAVLTRMSDAEVRKSVEAALDNVPFAIGINNHMGSKVTGDERVMGIV 194
           MEP +GK EWLGP A+ T +SD E+ K +E A+ +VP AIG+NNHMGSKVT DER+M I+
Sbjct: 83  MEPIKGKKEWLGPKAITTDLSDQEIEKRIEQAIQDVPHAIGMNNHMGSKVTADERIMRII 142

Query: 195 LAVCKERGLF 204
           L+VCK+  LF
Sbjct: 143 LSVCKKHNLF 152


>C3BHP6.1 C3BHP6_9BACI Putative uncharacterized protein
          Length = 255

 Score =  177 bits (450), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 106/140 (75%)

Query: 65  SSRVQSAEDSARRSRVAIIIDDFGNGMKGTDEMFALPVKFTVAVMPFLPTSVKDATRAHE 124
           S+ +   +  A  ++VAI+IDDFGN MKGT+ M +LP+  TVAVMPFLP++ +DA  AH+
Sbjct: 13  STVIFPFQTYAHTNKVAIVIDDFGNNMKGTERMLSLPIPLTVAVMPFLPSTKQDAVAAHQ 72

Query: 125 LGLDVLVHLPMEPRQGKPEWLGPGAVLTRMSDAEVRKSVEAALDNVPFAIGINNHMGSKV 184
            G +V++H+PMEP +GK EWLGP A+ T +SD E+   VE A+  VP AIG+NNHMGSKV
Sbjct: 73  KGHEVIIHMPMEPIKGKKEWLGPKAITTDLSDHEIESRVEQAIQEVPHAIGMNNHMGSKV 132

Query: 185 TGDERVMGIVLAVCKERGLF 204
           T DER+M I+L+VCK+ GLF
Sbjct: 133 TADERIMRIILSVCKKHGLF 152


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,496,213,634
Number of extensions: 56418859
Number of successful extensions: 108493
Number of sequences better than 1.0e-05: 376
Number of HSP's gapped: 108287
Number of HSP's successfully gapped: 376
Length of query: 290
Length of database: 3,060,696,203
Length adjustment: 134
Effective length of query: 156
Effective length of database: 1,798,280,193
Effective search space: 280531710108
Effective search space used: 280531710108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)