BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0013.p
         (240 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KHH4.1 B3KHH4_9BACI Cell wall hydrolase/autolysin                   117   8e-25
B1DBM7.1 B1DBM7_9BACL Cell wall hydrolase/autolysin                   105   4e-21
C0Z7Y7.1 C0Z7Y7_BREBN Putative N-acetylmuramoyl-L-alanine amidas...    86   3e-15

>B3KHH4.1 B3KHH4_9BACI Cell wall hydrolase/autolysin
          Length = 259

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 72/95 (75%)

Query: 107 LEKDITLAISRRLFLLLRSDGFDAILNRTGDYAPSDENRWLRSSSRHMKDLAQRKELAET 166
           LEKDI LAISRRLF+LLR +G+ A+LNR  DYA SD+NRW RSSSRH +DL+QRK+L+  
Sbjct: 90  LEKDINLAISRRLFMLLRKEGYHAVLNRDADYALSDDNRWHRSSSRHRRDLSQRKQLSSE 149

Query: 167 LPANVVVSIHINWARSPAKQGPLVXXXXPPRRSQL 201
           +P  +VVS+H+NW ++ +K+G +V      R + L
Sbjct: 150 IPTKLVVSVHVNWGKNASKRGGIVLHQSEGRSTLL 184


>B1DBM7.1 B1DBM7_9BACL Cell wall hydrolase/autolysin
          Length = 236

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 65/84 (77%)

Query: 107 LEKDITLAISRRLFLLLRSDGFDAILNRTGDYAPSDENRWLRSSSRHMKDLAQRKELAET 166
           LEKDI LAI+++L+LLL S G  A+LNRTGDYA S+ENRW  S SRH +DL+QR++L + 
Sbjct: 66  LEKDINLAIAQKLYLLLNSQGIPAVLNRTGDYALSEENRWHVSKSRHKRDLSQRRQLTDE 125

Query: 167 LPANVVVSIHINWARSPAKQGPLV 190
           +   ++VS+H+NW +  +K GPLV
Sbjct: 126 IETTMLVSLHVNWTKDRSKHGPLV 149


>C0Z7Y7.1 C0Z7Y7_BREBN Putative N-acetylmuramoyl-L-alanine amidase
           EC=3.5.1.28
          Length = 247

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 60/83 (72%)

Query: 108 EKDITLAISRRLFLLLRSDGFDAILNRTGDYAPSDENRWLRSSSRHMKDLAQRKELAETL 167
           EKDI L I++RL+  L + G+   LNR  D A SD+NRWL + SRH++DLAQRK LA+ +
Sbjct: 54  EKDINLQIAKRLYQQLTAAGYTVALNRHKDVALSDDNRWLDNRSRHIRDLAQRKNLAKEI 113

Query: 168 PANVVVSIHINWARSPAKQGPLV 190
              +++S+H+NW+ SP ++G ++
Sbjct: 114 GPQMMLSLHVNWSPSPRRRGAII 136


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,050,035,516
Number of extensions: 34148508
Number of successful extensions: 63870
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 64034
Number of HSP's successfully gapped: 3
Length of query: 240
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 108
Effective length of database: 1,817,122,223
Effective search space: 196249200084
Effective search space used: 196249200084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)