BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0011.p
         (358 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KHH2.1 B3KHH2_9BACI Putative uncharacterized protein                111   1e-22
B1DBM9.1 B1DBM9_9BACL Putative uncharacterized protein                 80   2e-13
C0ZBW2.1 C0ZBW2_BREBN Putative uncharacterized protein                 57   2e-06

>B3KHH2.1 B3KHH2_9BACI Putative uncharacterized protein
          Length = 371

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 112/237 (47%), Gaps = 10/237 (4%)

Query: 67  PDSVQDFARLTINKLSADPPFTSWKNAGTEYYPLGPGTHSWLVNVMDGEQRIGYLIITAK 126
           P+S+ DFA  T+++LS   PFT+W  A  E+ PLGPGTH WLV + D     GY+II+A 
Sbjct: 95  PESLVDFAEQTVDQLSVHAPFTAWDGAELEFTPLGPGTHGWLVTISDQGLPQGYMIISAG 154

Query: 127 DQGGYMLSEYGAGSYGLPYSLQDLRQFLAQQELIPS--NLSGQLELTALYAPLLPLWKLT 184
           + GGY+LSEYG GS  LP+S   L + LA +  + +  +L     +  LY  + P+W++ 
Sbjct: 155 EDGGYILSEYGIGS-TLPFSQAPLNERLAAEGFLKAGGSLPKGSSVRKLY-DVSPVWQVQ 212

Query: 185 I-DNKTLYINASVLQVLPWSISKAEDMLHAKS-----AAAGAISSLEPGLAPLPAYQTGG 238
           +   K +YI+A   +VLP  + +    +   S     A+ G ++S    +A  P    G 
Sbjct: 213 LPGKKPVYISALNSEVLPAELKQTTTAVKPVSASMPAASKGLVTSSTRWIAGAPTIAAGD 272

Query: 239 QDDPYADXXXXXXXXXXXXXGNXXXXXXXXXXXXXXXXPGRNDAFGGPFMITGCQNW 295
             DPY +                                  N AFG PF + G   W
Sbjct: 273 SRDPYDNLLWLASSNLTARSSADLRKLLQEHSSLIFKSKNSNAAFGAPFTLNGWHRW 329


>B1DBM9.1 B1DBM9_9BACL Putative uncharacterized protein
          Length = 267

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 78/149 (52%), Gaps = 12/149 (8%)

Query: 78  INKLSADPPFTSWKNAGTEYYPLGPGTHSWLVNVMDGEQRIGYLIITAKDQGGYMLSEYG 137
           +++L+  P F +W +A     PLGPGTHSW+  V D  Q  GYL+I AK+ GG+ L EYG
Sbjct: 20  MDELAKLPEFKAWNHAEFTVSPLGPGTHSWIAIVKDKGQPAGYLVIQAKENGGFALGEYG 79

Query: 138 AGSYGLPYSLQDLRQFLAQQELIPSNLSGQLELTALY-APLLPLWKLTIDNKTLYINASV 196
            G Y   +    L Q LAQ EL+ S  +      ALY  PLL +W +    +  Y++   
Sbjct: 80  TGEY--LFDQTTLHQSLAQLELLSSLPNTN---QALYIHPLLAVWDVNGSAENTYLDGMS 134

Query: 197 LQVLPW------SISKAEDMLHAKSAAAG 219
            + LP         +KAE+ L A+ A  G
Sbjct: 135 GEWLPLQKAALEKTAKAEEGLAARYALQG 163


>C0ZBW2.1 C0ZBW2_BREBN Putative uncharacterized protein
          Length = 285

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 19/136 (13%)

Query: 82  SADPPFTSWKNAGTEYYPLGPGTHSWLVNVMDGEQRIGYLII----TAKDQGGYMLSEYG 137
           S DP F  W++A T+   LG G H WLV++   ++++GYL+I     +     ++L EYG
Sbjct: 47  SRDPQFKQWQDAKTDVQTLGAGQHQWLVSIKKADKQVGYLVIGESPDSTSHEKFVLLEYG 106

Query: 138 AGSYGLPYSLQDLRQFLAQQELIPSNLSGQLELTALYAPLLPLWKLTIDNKTLYINASVL 197
            G Y            L      P  ++ +     +Y      W +T  + T  +NA   
Sbjct: 107 VGEY-----------ILFDDAFAPKEIAAE----PVYDGFASYWLITQKSDTQMVNAKTG 151

Query: 198 QVLPWSISKAEDMLHA 213
           ++ P S   +E  + A
Sbjct: 152 EMYPTSFQISEPAIDA 167


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,879,260,592
Number of extensions: 70772464
Number of successful extensions: 114158
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 114157
Number of HSP's successfully gapped: 3
Length of query: 358
Length of database: 3,060,696,203
Length adjustment: 137
Effective length of query: 221
Effective length of database: 1,770,017,148
Effective search space: 391173789708
Effective search space used: 391173789708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)