BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0565.0010.p (161 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHH1.1 B3KHH1_9BACI Putative uncharacterized protein 172 1e-41 B1DBN0.1 B1DBN0_9BACL Putative uncharacterized protein 125 2e-27 Q5KX74.1 Q5KX74_GEOKA Hypothetical conserved protein 78 3e-13 C3J0T6.1 C3J0T6_9BACI Putative uncharacterized protein 78 3e-13 B7YE29.1 B7YE29_9BACI Putative uncharacterized protein 78 3e-13 >B3KHH1.1 B3KHH1_9BACI Putative uncharacterized protein Length = 320 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 81/156 (51%), Positives = 105/156 (67%) Query: 5 SAAYEPWLAVCYKVEMSCDLKREELHFIGVSLTTGLIIPDFEAKLASRELTPRLPENIHI 64 S YE WL VC+KVE SCDLKREEL F+G+SL++ I DF A L RELTPRLPE++H+ Sbjct: 159 STPYEQWLGVCFKVEFSCDLKREELFFLGISLSSRAITEDFPAILHGRELTPRLPESVHV 218 Query: 65 QPFELTVADGAGRLEGYLTSKLALMDYSWXXXXXXXXXXXXDIVDIYYQELLKEQDEEKR 124 +P LT+ LE +L +KL+ +DY W ++D YY++LLKEQDEEK+ Sbjct: 219 RPAALTLEQAVAALENHLINKLSKLDYDWAAKAKERLEDELVVIDGYYEDLLKEQDEEKK 278 Query: 125 LATLEQYNRRRKETAWQYEPQIAVSAVTYGLFHLRS 160 EQY RR E WQYEP++++SA+T GLFHL S Sbjct: 279 AQIEEQYKNRRSEMQWQYEPKVSLSAITCGLFHLCS 314 >B1DBN0.1 B1DBN0_9BACL Putative uncharacterized protein Length = 310 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 65/154 (42%), Positives = 90/154 (58%) Query: 5 SAAYEPWLAVCYKVEMSCDLKREELHFIGVSLTTGLIIPDFEAKLASRELTPRLPENIHI 64 S Y WL V +VE +CD KREE+H GVSL TGL++ +F +L + +LTPRLP NIH+ Sbjct: 153 STPYTVWLGVNMRVEFACDRKREEIHSYGVSLATGLVVENFYDRLKNLKLTPRLPSNIHL 212 Query: 65 QPFELTVADGAGRLEGYLTSKLALMDYSWXXXXXXXXXXXXDIVDIYYQELLKEQDEEKR 124 L+ A G +E L KL DY+W D + YY ++K +EE + Sbjct: 213 TRNGLSYAKALGVIETSLERKLRNYDYTWAADAAARLEEELDRIRHYYDPMIKHAEEEAK 272 Query: 125 LATLEQYNRRRKETAWQYEPQIAVSAVTYGLFHL 158 A EQ+N+R+ E WQYEP++ SA+ G+FHL Sbjct: 273 EAIEEQFNQRQTEIKWQYEPRVTASAINCGIFHL 306 >Q5KX74.1 Q5KX74_GEOKA Hypothetical conserved protein Length = 264 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 11/155 (7%) Query: 5 SAAYEPWLAVCYKVEMSCDLKREELHFIGVSLTTGLIIPDFEAKLASRELTPRLPE-NIH 63 +AA PWL + + CD K++E+ +G+ L +G I+ F ++ R LTP++P+ Sbjct: 115 NAALHPWLGMNVTISYECDRKKDEIVSLGLHLISGTIVESFHERMRERRLTPKIPDYCFT 174 Query: 64 IQPFELTVADGAGRLEGYLTSKLALMDYSWXXXXXXXXXXXXDIVDIYYQELLKEQDEEK 123 I P + G GRLE Y+ S++A +++W ++D +Y++ EEK Sbjct: 175 ISPL-IKPRSGIGRLEQYIRSRIAADNHAWADEARRRWADDLALLDEFYKDC-----EEK 228 Query: 124 RLATLEQYNRRRKETAWQYEPQIAVSAVTYGLFHL 158 E Y ++ QY+P+I VS + GLF+L Sbjct: 229 ----PECYYIEKEALEKQYKPRITVSVINGGLFYL 259 >C3J0T6.1 C3J0T6_9BACI Putative uncharacterized protein Length = 264 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 11/155 (7%) Query: 5 SAAYEPWLAVCYKVEMSCDLKREELHFIGVSLTTGLIIPDFEAKLASRELTPRLPE-NIH 63 +AA PWL + + CD K++E+ +G+ L +G I+ F ++ R LTP++P+ Sbjct: 115 NAALHPWLGMNVTISYECDRKKDEIVSLGLHLISGTIVESFHERMRERRLTPKIPDYCFT 174 Query: 64 IQPFELTVADGAGRLEGYLTSKLALMDYSWXXXXXXXXXXXXDIVDIYYQELLKEQDEEK 123 I P + G GRLE Y+ S++A +++W ++D +Y++ EEK Sbjct: 175 ISPL-IKPRSGIGRLEQYIRSRIAADNHAWADEARRRWADDLALLDEFYKDC-----EEK 228 Query: 124 RLATLEQYNRRRKETAWQYEPQIAVSAVTYGLFHL 158 E Y ++ QY+P+I VS + GLF+L Sbjct: 229 ----PECYYIEKEALEKQYKPRITVSVINGGLFYL 259 >B7YE29.1 B7YE29_9BACI Putative uncharacterized protein Length = 264 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 80/155 (51%), Gaps = 11/155 (7%) Query: 5 SAAYEPWLAVCYKVEMSCDLKREELHFIGVSLTTGLIIPDFEAKLASRELTPRLPE-NIH 63 +AA PWL + + CD K++E+ +G+ L +G I+ F ++ R LTP++P+ Sbjct: 115 NAALHPWLGMNVTISYECDRKKDEIVSLGLHLISGTIVESFHERMRERRLTPKIPDYCFT 174 Query: 64 IQPFELTVADGAGRLEGYLTSKLALMDYSWXXXXXXXXXXXXDIVDIYYQELLKEQDEEK 123 I P + G GRLE Y+ S++A +++W ++D +Y++ EEK Sbjct: 175 ISPL-IKPRSGIGRLEQYIRSRIAADNHAWADEARRRWADDLALLDEFYKDC-----EEK 228 Query: 124 RLATLEQYNRRRKETAWQYEPQIAVSAVTYGLFHL 158 E Y ++ QY+P+I VS + GLF+L Sbjct: 229 ----PECYYIEKEALEKQYKPRITVSVINGGLFYL 259 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 849,044,287 Number of extensions: 28874354 Number of successful extensions: 77602 Number of sequences better than 1.0e-05: 97 Number of HSP's gapped: 77435 Number of HSP's successfully gapped: 97 Length of query: 161 Length of database: 3,060,696,203 Length adjustment: 121 Effective length of query: 40 Effective length of database: 1,920,753,388 Effective search space: 76830135520 Effective search space used: 76830135520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)