BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0008.p
         (142 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KHH1.1 B3KHH1_9BACI Putative uncharacterized protein                127   4e-28
B1DBN0.1 B1DBN0_9BACL Putative uncharacterized protein                 99   1e-19
Q9K932.1 Q9K932_BACHD BH2818 protein                                   64   4e-09
Q81M04.1 Q81M04_BACAN Putative uncharacterized protein                 64   5e-09
Q6HDT4.1 Q6HDT4_BACHK Putative uncharacterized protein                 64   5e-09

>B3KHH1.1 B3KHH1_9BACI Putative uncharacterized protein
          Length = 320

 Score =  127 bits (318), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 66/75 (88%)

Query: 1  MTLTAQEIRRHVMDYLEATECSIIEASPLHVTVKLSPRADRMLTDRPYYWGFVERTGVDP 60
          MT+T QE+++H M YLEATEC++IE SP HVTVKLSP+AD+MLT+RPYYWGFVERTG   
Sbjct: 1  MTMTPQEVQQHFMAYLEATECTVIEKSPEHVTVKLSPQADKMLTNRPYYWGFVERTGAPA 60

Query: 61 ETLSFTFVFEPEKYD 75
          ETLSF FVF+PEKYD
Sbjct: 61 ETLSFNFVFDPEKYD 75


>B1DBN0.1 B1DBN0_9BACL Putative uncharacterized protein
          Length = 310

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 59/73 (80%)

Query: 3  LTAQEIRRHVMDYLEATECSIIEASPLHVTVKLSPRADRMLTDRPYYWGFVERTGVDPET 62
          + ++++ ++V  +LEAT+CSI+E SP H TVKLSP ADR LT+RP+YW FV+RTG +PET
Sbjct: 1  MNSKQVHKYVQRFLEATQCSILEKSPAHFTVKLSPAADRELTNRPFYWSFVDRTGSEPET 60

Query: 63 LSFTFVFEPEKYD 75
          +S+ FV + EKY+
Sbjct: 61 MSYLFVTDKEKYE 73


>Q9K932.1 Q9K932_BACHD BH2818 protein
          Length = 266

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 47/71 (66%)

Query: 3  LTAQEIRRHVMDYLEATECSIIEASPLHVTVKLSPRADRMLTDRPYYWGFVERTGVDPET 62
          +  +++ + +  Y EA +  +I++SP H+TV+LS   D+ L +RP+YW ++E+TG  P+ 
Sbjct: 1  MQQEQLHQFLTRYFEANDSPLIDSSPYHLTVQLSIDMDKRLMNRPFYWHYLEKTGGIPQP 60

Query: 63 LSFTFVFEPEK 73
          +  T V +PEK
Sbjct: 61 MQMTLVTDPEK 71


>Q81M04.1 Q81M04_BACAN Putative uncharacterized protein
          Length = 264

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 45/74 (60%)

Query: 3  LTAQEIRRHVMDYLEATECSIIEASPLHVTVKLSPRADRMLTDRPYYWGFVERTGVDPET 62
          +   EI  ++ ++ EA  C I+E SP  + V+L+   D++L +RP+YW ++E+TG  P  
Sbjct: 1  MQQHEIHNYLYNFFEANNCEILERSPHLLDVQLTIEMDKLLMNRPFYWHYLEKTGGVPNP 60

Query: 63 LSFTFVFEPEKYDN 76
          +  T + +PE  +N
Sbjct: 61 MRLTLITDPENEEN 74


>Q6HDT4.1 Q6HDT4_BACHK Putative uncharacterized protein
          Length = 264

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 45/74 (60%)

Query: 3  LTAQEIRRHVMDYLEATECSIIEASPLHVTVKLSPRADRMLTDRPYYWGFVERTGVDPET 62
          +   EI  ++ ++ EA  C I+E SP  + V+L+   D++L +RP+YW ++E+TG  P  
Sbjct: 1  MQQHEIHNYLYNFFEANNCEILERSPHLLDVQLTIEMDKLLMNRPFYWHYLEKTGGVPNP 60

Query: 63 LSFTFVFEPEKYDN 76
          +  T + +PE  +N
Sbjct: 61 MRLTLITDPENEEN 74


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 545,134,212
Number of extensions: 16087523
Number of successful extensions: 28303
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 28303
Number of HSP's successfully gapped: 48
Length of query: 142
Length of database: 3,060,696,203
Length adjustment: 105
Effective length of query: 37
Effective length of database: 2,071,489,628
Effective search space: 76645116236
Effective search space used: 76645116236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)