BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0565.0007.p (581 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHH0.1 B3KHH0_9BACI SNF2-related protein 938 0.0 B1DBN1.1 B1DBN1_9BACL SNF2-related protein 791 0.0 C0ZBW4.1 C0ZBW4_BREBN Putative uncharacterized protein 700 0.0 C1PEL2.1 C1PEL2_BACCO SNF2-related protein 612 e-173 C2ZUA7.1 C2ZUA7_BACCE Uncharacterized ATP-dependent helicase yqhH 605 e-171 >B3KHH0.1 B3KHH0_9BACI SNF2-related protein Length = 585 Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/563 (79%), Positives = 496/563 (88%) Query: 18 PLLPVPLSFERNWLNDLESRLDKGGPWGDWRLSRLAVEGEKSGLVTSFDELQCMKHLSGL 77 P LPVPL +R+W +DL RLDKGGPWGD+RL++LAVEGEKS LVTSF+ELQC+KHL GL Sbjct: 15 PRLPVPLQIDRSWFDDLSGRLDKGGPWGDYRLAQLAVEGEKSRLVTSFEELQCLKHLGGL 74 Query: 78 SPLPHQLDTAHKVLFQMSGRAILADEVGLGKTIEAGLVLKEYLVRGLVARVLILVPASLV 137 SPLPHQ DTA +VLF+MSGRAILADEVGLGKTIEAGL+LKEY+VRGLV++VLILVPASLV Sbjct: 75 SPLPHQTDTARRVLFEMSGRAILADEVGLGKTIEAGLILKEYIVRGLVSKVLILVPASLV 134 Query: 138 LQWVRELNTKFGISAVAQKKSYSWSNDIVVASMDTAKRDPHKEMLLNNEYDMLVIDEAHK 197 LQWVRELN+KFGI AVAQKK+YSW NDIVVASMDTAKRDPH+E+LLN EYDML+IDEAHK Sbjct: 135 LQWVRELNSKFGIPAVAQKKAYSWGNDIVVASMDTAKRDPHQEILLNQEYDMLIIDEAHK 194 Query: 198 LKNKKSSNYLFVQQLRKKYCLLLTATPVQNDLGELFNLITLLKPGQLGNQGDFATNFVVD 257 LKNKK+SNY F+Q+LRKKYCLLLTATPVQNDL ELFNLITLLKPGQLG QG FA NFVVD Sbjct: 195 LKNKKTSNYQFIQKLRKKYCLLLTATPVQNDLSELFNLITLLKPGQLGGQGQFAANFVVD 254 Query: 258 KRQPKNEVQLRDELSKVMIRNRRGEGPVTFTKRKVRNIPLTLSPEEKVLYDGVTAFVKDQ 317 KR+PKN+ QL+DELSKVMIRNRRGEG V FTKR VRN+ L+LSPEE+ LYDGVT+FVKDQ Sbjct: 255 KRRPKNQDQLKDELSKVMIRNRRGEGEVKFTKRSVRNVGLSLSPEEQSLYDGVTSFVKDQ 314 Query: 318 YQEAGGNLSSMLSLVTLQREVCSSRDAVFITLVNLIKKLPADSPKRDRMMELLQTIRTVK 377 YQ AGGNLSSMLSLVTLQREVCSSRDAVF+TLVNL KKLP DSP RD++ EL+ I+ +K Sbjct: 315 YQAAGGNLSSMLSLVTLQREVCSSRDAVFVTLVNLSKKLPEDSPLRDKIWELVYLIKAIK 374 Query: 378 TNTKAEKTMELIREMNEKVIVFTEYRATQEYLLQYFRDHGLQCVTYSGGMNRGKKDWMMD 437 NTKAEK +ELI++MNEKVIVFTEYRATQEYLL YFRDHGL V Y GGMNRGKKDWMMD Sbjct: 375 ANTKAEKAIELIQQMNEKVIVFTEYRATQEYLLNYFRDHGLVSVPYRGGMNRGKKDWMMD 434 Query: 438 LFRGRAQVMIATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQENDVVIYNL 497 LFRG+AQVMIATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQ NDV IYNL Sbjct: 435 LFRGKAQVMIATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQTNDVKIYNL 494 Query: 498 STEGTIEEHILHLLHEKINMFEMVIGGLDVILERFXXXXXXXXXXYKIMLEARSDEELRS 557 ST GTIEEHIL+LLHEKINMFEMVIGGLDVILERF YKIMLE+ +D+E+R Sbjct: 495 STSGTIEEHILNLLHEKINMFEMVIGGLDVILERFEKKESIEKSLYKIMLESGNDDEIRQ 554 Query: 558 GVDHIGDSLSELTHGMRDGQEAE 580 + +GDS+ + + AE Sbjct: 555 RISTLGDSIHHIKQDVELESAAE 577 >B1DBN1.1 B1DBN1_9BACL SNF2-related protein Length = 608 Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/550 (68%), Positives = 455/550 (82%), Gaps = 2/550 (0%) Query: 22 VPLSFERNWLNDLESRLDKGGPWGDWRLSRLAVEGEKSGLVTSFDELQCMKHLSGLSPLP 81 V L +R W ++L++R+ K GPW DW L +L +E E++ V SF++LQC++ L P+P Sbjct: 29 VDLQCDRTWFDELQNRVAKNGPWDDWTLYQLTMEAEQAKRVDSFEQLQCLRTLPSFEPMP 88 Query: 82 HQLDTAHKVLFQMSGRAILADEVGLGKTIEAGLVLKEYLVRGLVARVLILVPASLVLQWV 141 HQ+DTA KV+ +M GRAILADEVGLGKTIEAGLV+KEY+VRGLV + LILVPASLVLQWV Sbjct: 89 HQVDTARKVVHEMGGRAILADEVGLGKTIEAGLVIKEYMVRGLVRKALILVPASLVLQWV 148 Query: 142 RELNTKFGISAVAQKKSYSWSNDIVVASMDTAKRDPHKEMLLNNEYDMLVIDEAHKLKNK 201 RELN+KFGISAVAQKK ++W D+VVAS+DTAKRDPH+E++L +YDM++IDEAHKLKNK Sbjct: 149 RELNSKFGISAVAQKKEHTWQYDVVVASIDTAKRDPHREIILGQDYDMIIIDEAHKLKNK 208 Query: 202 KSSNYLFVQQLRKKYCLLLTATPVQNDLGELFNLITLLKPGQLGNQGDFATNFVVDKRQP 261 K++NY F QLRKKYCLLLTATP+QNDL EL+NLITLLKPGQLG Q +FA NFVVDKR P Sbjct: 209 KTTNYQFALQLRKKYCLLLTATPIQNDLDELYNLITLLKPGQLGGQSEFAANFVVDKRLP 268 Query: 262 KNEVQLRDELSKVMIRNRRGEGPVTFTKRKVRNIPLTLSPEEKVLYDGVTAFVKDQYQEA 321 KNE QL+D LS VMIRNRRG+G ++FTKR V+NIPL LS EEK LYD VTAFV+D+Y+E Sbjct: 269 KNEDQLQDALSTVMIRNRRGDGGISFTKRVVKNIPLELSSEEKALYDAVTAFVRDRYKED 328 Query: 322 GGNLSSMLSLVTLQREVCSSRDAVFITLVNLIKKLPADSPKRDRMMELLQTIRTVKTNTK 381 G ++ SML LVTLQREVCSSRDAVFITLVNL KK DSP R ++ EL++ I+ +K NTK Sbjct: 329 GVDMMSMLPLVTLQREVCSSRDAVFITLVNLFKKTAEDSPIRPKIWELVEFIKQIKANTK 388 Query: 382 AEKTMELIREMNEKVIVFTEYRATQEYLLQYFRDHGLQCVTYSGGMNRGKKDWMMDLFRG 441 AEK MELI+++N+KVI+FTEYRA+QEYLLQ+FR H + V Y GGMNRGKKDWMMDLFRG Sbjct: 389 AEKVMELIQQINDKVIIFTEYRASQEYLLQFFRSHNILAVPYRGGMNRGKKDWMMDLFRG 448 Query: 442 RAQVMIATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQENDVVIYNLSTEG 501 RAQV+IATEAGGEGINLQFCH+MINFDLPWNPMRVEQRIGRVHRLGQ+ DV IYNL T G Sbjct: 449 RAQVLIATEAGGEGINLQFCHNMINFDLPWNPMRVEQRIGRVHRLGQKEDVKIYNLCTLG 508 Query: 502 TIEEHILHLLHEKINMFEMVIGGLDVILERFXXXX-XXXXXXYKIMLEARSDE-ELRSGV 559 TIEEHI++LLHEKIN+FE+VIG LD ILERF +++LE+ + L + Sbjct: 509 TIEEHIVNLLHEKINLFELVIGELDHILERFETDAGSIEQQLARMLLESEGNAVHLEERL 568 Query: 560 DHIGDSLSEL 569 +H+G S+S+L Sbjct: 569 NHLGSSISKL 578 >C0ZBW4.1 C0ZBW4_BREBN Putative uncharacterized protein Length = 568 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/548 (59%), Positives = 438/548 (79%), Gaps = 4/548 (0%) Query: 22 VPLSFERNWLNDLESRLDKGGPWGDWRLSRLAVEGEKSGLVTSFDELQCMKHLSGLSPLP 81 VP+SF+ +W+N L R+ + GPW W L +L++E E++ V FD+LQC+K+L LSP P Sbjct: 4 VPISFDTSWINPLTERMQEDGPWDKWELFKLSLEAEEAMAVHDFDQLQCLKYLPLLSPFP 63 Query: 82 HQLDTAHKVLFQMSGRAILADEVGLGKTIEAGLVLKEYLVRGLVARVLILVPASLVLQWV 141 HQL+TA +VL +M GRAILADEVGLGKTIEAGL++KEY+VRGL ++L+LVPASLV+QW Sbjct: 64 HQLETAKRVLLEMRGRAILADEVGLGKTIEAGLIMKEYMVRGLAKKILVLVPASLVIQWT 123 Query: 142 RELNTKFGISAVAQKKSYSW-SNDIVVASMDTAKRDPHKEMLLNNEYDMLVIDEAHKLKN 200 +EL+ KFGI+AVAQKK Y W +++VVAS+DTAKRDPH+ +L+ +YDML+IDEAHKLKN Sbjct: 124 KELHQKFGIAAVAQKKEYMWRQHEVVVASIDTAKRDPHRRHVLDIDYDMLIIDEAHKLKN 183 Query: 201 KKSSNYLFVQQLRKKYCLLLTATPVQNDLGELFNLITLLKPGQLGNQGDFATNFVVDKRQ 260 K++ NY FV+++RKKYCLLLTATP+QN++ EL+NLI LLKPG LG+ F+TN+V KRQ Sbjct: 184 KRTRNYQFVKEIRKKYCLLLTATPIQNEMDELYNLINLLKPGHLGHTSTFSTNYVEGKRQ 243 Query: 261 PKNEVQLRDELSKVMIRNRRGEGPVTFTKRKVRNIPLTLSPEEKVLYDGVTAFVKDQYQE 320 KN +LR+E+ KVMIRN+R +G + FT R+V++IP+ L+PEE LY+GVT FV++QYQ Sbjct: 244 SKNSEKLREEIEKVMIRNKRSDGGIQFTSRRVQSIPIDLTPEEMTLYEGVTRFVREQYQT 303 Query: 321 AGG--NLSSMLSLVTLQREVCSSRDAVFITLVNLIKKLPADSPKRDRMMELLQTIRTVKT 378 G +S L+L+TLQREVCSS++A F+TL N+ ++ DSP R +++EL++ I+ ++T Sbjct: 304 GFGVGGFNS-LALITLQREVCSSKEAAFMTLYNMHQRTGEDSPLRTQILELVEMIKQIET 362 Query: 379 NTKAEKTMELIREMNEKVIVFTEYRATQEYLLQYFRDHGLQCVTYSGGMNRGKKDWMMDL 438 ++KA KT+ELI+++N+KVI+FTEYRATQ YL +Y DHG+ V + GG R KKDWM DL Sbjct: 363 HSKAAKTVELIQQINDKVIIFTEYRATQNYLQKYLHDHGITSVPFRGGFKRSKKDWMTDL 422 Query: 439 FRGRAQVMIATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQENDVVIYNLS 498 F+ RAQV+IATEAGGEGINLQFC+ +IN+D+PWNPMRVEQRIGRVHRLGQ+ DV IYNLS Sbjct: 423 FQNRAQVLIATEAGGEGINLQFCNQVINYDMPWNPMRVEQRIGRVHRLGQKRDVHIYNLS 482 Query: 499 TEGTIEEHILHLLHEKINMFEMVIGGLDVILERFXXXXXXXXXXYKIMLEARSDEELRSG 558 T GTIEEHIL LL+EKI++FEMVIG LD I+ER +I+++++S +E+ Sbjct: 483 TTGTIEEHILKLLYEKIDLFEMVIGELDDIVERLNLNHSLEDNLIQIIMDSQSSKEMALK 542 Query: 559 VDHIGDSL 566 +D+IG ++ Sbjct: 543 LDNIGHAI 550 >C1PEL2.1 C1PEL2_BACCO SNF2-related protein Length = 567 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 299/517 (57%), Positives = 380/517 (73%), Gaps = 10/517 (1%) Query: 20 LPVPLSFERNWLNDLESRLDKGGPWGDWRLSRLAVEGEKSGLVTSFDELQCMKHLSGLSP 79 + V + F+R+W L R GPWG W L +LAVE EK ++ F+ LQ KHL+ + P Sbjct: 1 MEVNIEFDRSWETGLMERYQDDGPWGKWELYKLAVEMEKRLVIPEFEGLQAPKHLANVKP 60 Query: 80 LPHQLDTAHKVLFQMSGRAILADEVGLGKTIEAGLVLKEYLVRGLVARVLILVPASLVLQ 139 L HQL+ A +V+ +M+G+AILADEVGLGKTIEAGL+LKEY++RGL +VLILVPASLV Q Sbjct: 61 LAHQLEVARQVVEKMNGKAILADEVGLGKTIEAGLILKEYMIRGLAKKVLILVPASLVSQ 120 Query: 140 WVRELNTKFGISAVAQKKSYSWSN-DIVVASMDTAKRDPHKEMLLNNEYDMLVIDEAHKL 198 WV ELN+KF I AV QKKSY W D VV+S+DTAKR PH++++ +YDM++IDEAHKL Sbjct: 121 WVAELNSKFHIPAVGQKKSYMWEQYDCVVSSIDTAKRSPHRDIIYKQQYDMIIIDEAHKL 180 Query: 199 KNKKSSNYLFVQQLRKKYCLLLTATPVQNDLGELFNLITLLKPGQLGNQGDFATNFVVDK 258 KN + NY FVQ L+KK+CLLLTATP+QN + E+F+L++LLKPG LG++ +F+ + Sbjct: 181 KNPNTKNYAFVQGLKKKFCLLLTATPIQNRIDEIFHLVSLLKPGHLGSESNFSKKYKKGD 240 Query: 259 RQPKNEVQLRDELSKVMIRNRRGEGPVTFTKRKVRNIPLTLSPEEKVLYDGVTAFVK--D 316 RQ K + LR+ +SKVMIRNRR V +TKR+V + + S EE+ LYD + + + Sbjct: 241 RQVKEDEHLRELVSKVMIRNRRTNTGVEWTKRRVETVLIDFSKEERELYDALQTIRQGSE 300 Query: 317 QYQEAGGNLSSMLSLVTLQREVCSSRDAVFITLVNLIKKLPADSPK-RDRMMELLQTIRT 375 Y AG SL+TLQRE CSSR+AVF+TL NL+KK SP + + L+Q I Sbjct: 301 SYSRAG------FSLLTLQREACSSREAVFVTLKNLLKKTEQPSPVLEETVAALIQKIEA 354 Query: 376 VKTNTKAEKTMELIREMNEKVIVFTEYRATQEYLLQYFRDHGLQCVTYSGGMNRGKKDWM 435 VKTN+KAEK +ELI+ +++KVI+FTEYRATQ YL + + HG+ V + GG RGKKDWM Sbjct: 355 VKTNSKAEKALELIQNIDDKVIIFTEYRATQLYLQWFLKQHGISSVPFRGGFKRGKKDWM 414 Query: 436 MDLFRGRAQVMIATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQENDVVIY 495 LF AQV+IATEAGGEGINLQFCHHMINFDLPWNPMR+EQRIGRVHRLGQE DV IY Sbjct: 415 RQLFENHAQVLIATEAGGEGINLQFCHHMINFDLPWNPMRLEQRIGRVHRLGQEKDVHIY 474 Query: 496 NLSTEGTIEEHILHLLHEKINMFEMVIGGLDVILERF 532 N +T+ T+EEHIL LL+EKI++FE VIG LD IL R Sbjct: 475 NFATKNTVEEHILKLLYEKIHLFERVIGELDEILTRL 511 >C2ZUA7.1 C2ZUA7_BACCE Uncharacterized ATP-dependent helicase yqhH Length = 560 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 298/547 (54%), Positives = 400/547 (73%), Gaps = 11/547 (2%) Query: 20 LPVPLSFERNWLNDLESRLDKGGPWGDWRLSRLAVEGEKSGLVTSFDELQCMKHLSGLSP 79 + V +S +R W N+ R+D+ GPW +W L +LA + EKS LV +FD LQ KHLS +P Sbjct: 1 MNVDISVDRTWQNNFLKRIDEDGPWTNWDLYQLAYKTEKSLLVPTFDGLQAPKHLSHFTP 60 Query: 80 LPHQLDTAHKVLFQMSGRAILADEVGLGKTIEAGLVLKEYLVRGLVARVLILVPASLVLQ 139 LPHQL+ A V+ QM+G+AILADEVGLGKTIEAGL+LKEY+VRGLV +VLILVPASLV Q Sbjct: 61 LPHQLEVAQNVIEQMNGKAILADEVGLGKTIEAGLILKEYMVRGLVKKVLILVPASLVSQ 120 Query: 140 WVRELNTKFGISAVAQKKSYSWSN-DIVVASMDTAKRDPHKEMLLNNEYDMLVIDEAHKL 198 W ELNTKF I AVAQKKSYSW D++V+S+DTAKR PH++++LN EYD+++IDEAHKL Sbjct: 121 WAYELNTKFFIPAVAQKKSYSWEQADVIVSSIDTAKRSPHRDIVLNLEYDLIIIDEAHKL 180 Query: 199 KNKKSSNYLFVQQLRKKYCLLLTATPVQNDLGELFNLITLLKPGQLGNQGDFATNFVVDK 258 KN K+ NY F Q+L+KK+CLLLTATPVQN + E+FNL++LLKPG LGNQ +F + Sbjct: 181 KNNKTKNYEFAQRLKKKFCLLLTATPVQNKIDEIFNLVSLLKPGHLGNQSNFEEYYASKN 240 Query: 259 RQPKNEVQLRDELSKVMIRNRRGEGPVTFTKRKVRNIPLTLSPEEKVLYDGVTAFVKDQY 318 R +++ L+ ++KVM+RNRR + + KR VR I + + EE+ LY+ + + + Sbjct: 241 RSAESDEDLKALINKVMVRNRRHNTGIDWPKRHVRTIFVEFNEEEQALYNAIENW---RG 297 Query: 319 QEAGGNLSSMLSLVTLQREVCSSRDAVFITLVNLIKKLPADSP---KRDRMMELLQTIRT 375 Q+A +S S +TL+RE CSSR+AV+ +L ++K ++ K + L+ I Sbjct: 298 QDA---FTSAFSSLTLKREACSSREAVYYSLKKHVEKRQKENEHYIKEPHIDVLMDKINH 354 Query: 376 VKTNTKAEKTMELIREMNEKVIVFTEYRATQEYLLQYFRDHGLQCVTYSGGMNRGKKDWM 435 + N+KA K +ELI+E+++KVI+FTEYRA+Q YL + + HG+ V + GG RGKKDWM Sbjct: 355 IPFNSKANKALELIKEIDDKVIIFTEYRASQMYLQWFLQQHGISSVPFRGGFKRGKKDWM 414 Query: 436 MDLFRGRAQVMIATEAGGEGINLQFCHHMINFDLPWNPMRVEQRIGRVHRLGQENDVVIY 495 +LF+ RAQV+IATEAGGEGINLQFC HMIN+DLPWNPMR+EQRIGR+HRLGQ+NDV IY Sbjct: 415 KELFQNRAQVLIATEAGGEGINLQFCSHMINYDLPWNPMRLEQRIGRIHRLGQKNDVHIY 474 Query: 496 NLSTEGTIEEHILHLLHEKINMFEMVIGGLDVILERFXXXXXXXXXXYKIMLEARSDEEL 555 NL+T+ T+EEHIL LL+EKIN+FE VIG LD IL R +I +++S+ E+ Sbjct: 475 NLATKHTVEEHILKLLYEKINLFERVIGELDEILTRINMKNIDAHIQ-EIFAQSKSEGEI 533 Query: 556 RSGVDHI 562 R +D++ Sbjct: 534 RIKMDNL 540 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,281,318,308 Number of extensions: 134395123 Number of successful extensions: 364391 Number of sequences better than 1.0e-05: 5398 Number of HSP's gapped: 359577 Number of HSP's successfully gapped: 6937 Length of query: 581 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 440 Effective length of database: 1,732,333,088 Effective search space: 762226558720 Effective search space used: 762226558720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)