BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0565.0004.p (195 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4FK04.1 A4FK04_SACEN IS630 family transposase 146 9e-34 Q67NV4.1 Q67NV4_SYMTH Transposase 139 2e-31 B1VKL0.1 B1VKL0_STRGG Putative transposase 132 1e-29 Q2JDM7.1 Q2JDM7_FRASC Putative transposase 123 1e-26 B5GA03.1 B5GA03_9ACTO Transposase 122 1e-26 >A4FK04.1 A4FK04_SACEN IS630 family transposase Length = 478 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 69/162 (42%), Positives = 103/162 (63%) Query: 6 IFVRDLTQEEGNRLKRIARKGADPVQVRRALLILASAQKMKVPEISRLYHISGEHIRHTI 65 +FVR ++ EG RL++I+R DPV++RRA+++ ASAQ VP+I+ L +S +++R I Sbjct: 27 VFVRPVSLAEGQRLQKISRTAKDPVKLRRAIVVWASAQGQSVPDIAHLLDVSPDYVRDVI 86 Query: 66 HRFNQEGLPSLKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTNWSLSKLKQAVEE 125 H FN++G +L PK+ GG P T R+ I +A P++ PF+ WSL+KL + E Sbjct: 87 HAFNEQGFGALDPKWSGGAPKTIDEPTRARICAIAGCDPRILRQPFSTWSLAKLCDYLVE 146 Query: 126 RKIVSSISIEMLRVILGEAKITYQNTKTWKDLNDPDFESKKT 167 + V IS E LR IL + +++Q T TWK NDPDF +K T Sbjct: 147 HRYVERISWETLRRILRDDGVSWQTTTTWKASNDPDFTAKMT 188 >Q67NV4.1 Q67NV4_SYMTH Transposase Length = 175 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 69/150 (46%), Positives = 103/150 (68%) Query: 6 IFVRDLTQEEGNRLKRIARKGADPVQVRRALLILASAQKMKVPEISRLYHISGEHIRHTI 65 IFVR+L+ EE L+R AR+ V RRA ++LASAQ + P+I++ +H S +H+RH I Sbjct: 2 IFVRELSAEERAELERAARRRHRVVSSRRAAIVLASAQGLTAPQIAQRFHCSVDHVRHVI 61 Query: 66 HRFNQEGLPSLKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTNWSLSKLKQAVEE 125 H FN+ GL +LKP YCGGRP F +R+ I++LA PP+VAG+P+ WSLS+L++A+ + Sbjct: 62 HHFNEHGLDALKPAYCGGRPRVFDANQRARIVKLALTPPQVAGFPWPCWSLSRLQEALVQ 121 Query: 126 RKIVSSISIEMLRVILGEAKITYQNTKTWK 155 IV IS E +R++L EA + ++ W+ Sbjct: 122 LHIVDGISKETIRLVLDEAGVRCRSRGAWR 151 >B1VKL0.1 B1VKL0_STRGG Putative transposase Length = 377 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/161 (44%), Positives = 97/161 (60%), Gaps = 1/161 (0%) Query: 8 VRDLTQEEGNRLKRIARKGADPVQV-RRALLILASAQKMKVPEISRLYHISGEHIRHTIH 66 VR++ EEG RL RI R+G V RRA ++L SAQ M V +I+ + S + IR IH Sbjct: 7 VREIDDEEGRRLLRIVRRGTGSVVTWRRAQMVLLSAQGMPVAKIAEVSFTSDDRIRDVIH 66 Query: 67 RFNQEGLPSLKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTNWSLSKLKQAVEER 126 FN +G SL PKY GGRP TFT ER EI ++++ P PF+ WSL+KL + Sbjct: 67 NFNADGFESLYPKYRGGRPKTFTLPERREIKKISKSKPTEHDLPFSTWSLTKLADFLVAE 126 Query: 127 KIVSSISIEMLRVILGEAKITYQNTKTWKDLNDPDFESKKT 167 +V IS E LR++L E +++Q KTWK +DP++ KK Sbjct: 127 GVVDDISHEGLRILLREEGVSFQRLKTWKTSHDPEYAVKKA 167 >Q2JDM7.1 Q2JDM7_FRASC Putative transposase Length = 172 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 66/165 (40%), Positives = 95/165 (57%), Gaps = 2/165 (1%) Query: 6 IFVRDLTQEEGNRLKRIARKGA-DPVQVRRALLILASAQKMKVPEISRLYHISGEHIRHT 64 + R LT EE +++ I R+G V+ RRA +I+ASA VP I+RL +R Sbjct: 5 VRARRLTGEESRQVQAIVRRGTHSSVRARRATIIMASAGGTTVPAIARLVAADEGTVRDV 64 Query: 65 IHRFNQEGLPSLKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTNWSLSKLKQAVE 124 IHRFN+ GL L P++ GGRP + E+ + II +A+ P G PFT+WSL KL + Sbjct: 65 IHRFNEIGLACLDPRWAGGRPRRISCEDEAFIIAVARTRPTKLGRPFTHWSLRKLADYLG 124 Query: 125 ER-KIVSSISIEMLRVILGEAKITYQNTKTWKDLNDPDFESKKTN 168 + V ++ E LR +LG +I++Q T+TWK+ DPD E T Sbjct: 125 DNPDRVVTVGRERLRQLLGHHRISFQRTRTWKEFTDPDKEGNSTG 169 >B5GA03.1 B5GA03_9ACTO Transposase Length = 234 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/164 (41%), Positives = 97/164 (59%), Gaps = 6/164 (3%) Query: 6 IFVRDLTQEEGNRLKRIARKGA-DPVQVRRALLILASAQKMKVPEISRLYHISGEHIRHT 64 + VR LT +EG +L++I R+G+ V+ RRA+++LASA +VP I++L + +R Sbjct: 24 VRVRRLTDQEGQKLQQIVRQGSTSSVRYRRAMMLLASAGGNRVPAIAQLVQADEDTVRDV 83 Query: 65 IHRFNQEGLPSLKPKYCGGRPPTFTPEERSEIIELAQIPPKVAGYPFTNWSLSKLKQAVE 124 IHRFN+ GL L P++ GGRP P++ ++ A P G PFT WS KL A Sbjct: 84 IHRFNEIGLACLDPRWAGGRPRLLKPDDEDFVVATATTRPTKLGQPFTRWSSRKL--AAH 141 Query: 125 ERKI---VSSISIEMLRVILGEAKITYQNTKTWKDLNDPDFESK 165 RK+ V I E LR +L IT+Q TKTWK+ DPD ++K Sbjct: 142 LRKVHGRVIRIGREALRCLLRRRGITFQRTKTWKESPDPDRDAK 185 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,220,847,701 Number of extensions: 49343969 Number of successful extensions: 117877 Number of sequences better than 1.0e-05: 41 Number of HSP's gapped: 117891 Number of HSP's successfully gapped: 41 Length of query: 195 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 67 Effective length of database: 1,854,806,283 Effective search space: 124272020961 Effective search space used: 124272020961 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)