BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0003.p
         (78 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B4UZ38.1 B4UZ38_9ACTO Transposase                                      85   2e-15
C0TZV6.1 C0TZV6_9ACTO Putative uncharacterized protein                 83   8e-15
B4UXW3.1 B4UXW3_9ACTO Transposase                                      82   2e-14
B5H6A1.1 B5H6A1_STRPR IS630 family transposase                         81   3e-14
B5I4D8.1 B5I4D8_9ACTO Transposase                                      81   3e-14

>B4UZ38.1 B4UZ38_9ACTO Transposase
          Length = 370

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 47/74 (63%)

Query: 1   VKEWAAANNVEFVYTPTYASWLNRIECHFGPLRKFVLEGSDFAKHQDLGLAIQAYLRWRN 60
           ++ WAA N VE  +TPTYASW N IE HFGPLR+F L  S+   H     A+ AYLRWRN
Sbjct: 278 IRRWAARNKVELCFTPTYASWANPIEAHFGPLRQFTLANSNHPNHTVQTRALHAYLRWRN 337

Query: 61  KNKRKAIILREQNK 74
           KN R   +L  Q +
Sbjct: 338 KNARHPDVLAAQRR 351


>C0TZV6.1 C0TZV6_9ACTO Putative uncharacterized protein
          Length = 109

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 47/72 (65%)

Query: 1  VKEWAAANNVEFVYTPTYASWLNRIECHFGPLRKFVLEGSDFAKHQDLGLAIQAYLRWRN 60
          ++ WA  +NVE   TPTYASW N IE HFGPLR FVL  S++  H +L  A+ A+LRWRN
Sbjct: 14 IRRWAERHNVELCPTPTYASWANPIEVHFGPLRSFVLANSEYTNHVELTRALHAHLRWRN 73

Query: 61 KNKRKAIILREQ 72
           + R   +L  Q
Sbjct: 74 DHARDPELLAAQ 85


>B4UXW3.1 B4UXW3_9ACTO Transposase
          Length = 391

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 45/74 (60%)

Query: 1   VKEWAAANNVEFVYTPTYASWLNRIECHFGPLRKFVLEGSDFAKHQDLGLAIQAYLRWRN 60
           ++ WA  N VE  +TPTYASW N IE HFGPLR+F +  S+   H     A+ AYLRWRN
Sbjct: 296 IRRWAKKNRVELCFTPTYASWANPIEAHFGPLRQFTIANSNHRNHTVQTRALHAYLRWRN 355

Query: 61  KNKRKAIILREQNK 74
            N R   +L  Q +
Sbjct: 356 ANARHPDVLAAQRR 369


>B5H6A1.1 B5H6A1_STRPR IS630 family transposase
          Length = 231

 Score = 81.3 bits (199), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 45/74 (60%)

Query: 1   VKEWAAANNVEFVYTPTYASWLNRIECHFGPLRKFVLEGSDFAKHQDLGLAIQAYLRWRN 60
           ++ WA  N VE  +TPTYASW N IE HFGPLR+F +  S    H     A+ AYLRWRN
Sbjct: 138 IRCWARKNRVELCFTPTYASWANPIEAHFGPLRQFTIANSHHGNHTVQTRALHAYLRWRN 197

Query: 61  KNKRKAIILREQNK 74
           KN R   +L  Q +
Sbjct: 198 KNARHPDVLAAQRR 211


>B5I4D8.1 B5I4D8_9ACTO Transposase
          Length = 391

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 44/74 (59%)

Query: 1   VKEWAAANNVEFVYTPTYASWLNRIECHFGPLRKFVLEGSDFAKHQDLGLAIQAYLRWRN 60
           ++ WA  N VE  +TPTYASW N IE HFGPLR+F +  S    H     A+ AYLRWRN
Sbjct: 296 IRRWAKKNKVELCFTPTYASWANPIEAHFGPLRQFTIADSHHPNHSAQTRALHAYLRWRN 355

Query: 61  KNKRKAIILREQNK 74
            N R   +L  + K
Sbjct: 356 ANARHRDVLAAERK 369


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 495,281,817
Number of extensions: 16386069
Number of successful extensions: 29600
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 29607
Number of HSP's successfully gapped: 23
Length of query: 78
Length of database: 3,060,696,203
Length adjustment: 49
Effective length of query: 29
Effective length of database: 2,599,066,468
Effective search space: 75372927572
Effective search space used: 75372927572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)