BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0565.0001.p
         (151 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q894W6.1 Q894W6_CLOTE Putative permease                               115   1e-24
Q893J8.1 Q893J8_CLOTE ABC transporter ATP-binding protein             104   3e-21
B6FSP2.1 B6FSP2_9CLOT Putative uncharacterized protein                103   5e-21
C3IJ92.1 C3IJ92_BACTU ABC transporter permease protein                102   8e-21
Q3ELV4.1 Q3ELV4_BACTI ABC transporter permease protein                102   8e-21

>Q894W6.1 Q894W6_CLOTE Putative permease
          Length = 875

 Score =  115 bits (288), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 92/139 (66%), Gaps = 2/139 (1%)

Query: 10  KAKNDAKTFSIFFYGFIGVIVLIAFLNIINTVSTNLILRTNEFATLKAIGMTQKEVRKMI 69
           + ++ A   +IF YGF+GVI LI  LNI+NT+STNLILR  E A ++A+GM + ++ KMI
Sbjct: 736 RNRDKAIAINIFLYGFVGVITLIGCLNIVNTISTNLILRKRELAMIRAVGMDRGKMSKMI 795

Query: 70  ILEGVFYGLFSAVIGIILGTALDYGIHLLFMGALDADWVFPWYSIGIAFAGSMITXXXXL 129
            +EG++YG+ +++ G I+GTAL Y +  +     D  WVFP   I IA  G++I     +
Sbjct: 796 CIEGIYYGIIASIYGGIIGTALSYELFKIMTNFRDFQWVFPIKEILIAVIGAII--ISLI 853

Query: 130 ATIGPMYRLNKVSIVDALR 148
           +T  P+ ++NK +I++ +R
Sbjct: 854 STYIPLRKINKENIIENIR 872


>Q893J8.1 Q893J8_CLOTE ABC transporter ATP-binding protein
          Length = 845

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 2/140 (1%)

Query: 10  KAKNDAKTFSIFFYGFIGVIVLIAFLNIINTVSTNLILRTNEFATLKAIGMTQKEVRKMI 69
           + K+      I  YGFI V+ LI  +NIINT++TNLILR  E A+L AIGMT K +++MI
Sbjct: 706 EQKSSGLQIKILMYGFIVVVSLIGAVNIINTITTNLILRKKEIASLSAIGMTYKNIKRMI 765

Query: 70  ILEGVFYGLFSAVIGIILGTALDYGIHLLFMGALDADWVFPWYSIGIAFAGSMITXXXXL 129
           + EG+ YG++ ++ G+I+GT L Y +       +   W  PW SI IA   S+      +
Sbjct: 766 LTEGILYGVYGSIYGVIVGTFLSYAMFSNMTNIMKFKWPIPWQSICIAVGTSIF--IGLI 823

Query: 130 ATIGPMYRLNKVSIVDALRS 149
           + I P+  + K +I+D +++
Sbjct: 824 SVIRPLNMIKKSNIIDVIKA 843


>B6FSP2.1 B6FSP2_9CLOT Putative uncharacterized protein
          Length = 834

 Score =  103 bits (257), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 80/133 (60%), Gaps = 2/133 (1%)

Query: 19  SIFFYGFIGVIVLIAFLNIINTVSTNLILRTNEFATLKAIGMTQKEVRKMIILEGVFYGL 78
           +IF YGFI VI  I   NI NT++TN+ LR+ EFA L+++GMT+KE RKMI  E + YG 
Sbjct: 703 AIFLYGFIAVISAIGITNIFNTITTNMTLRSREFAILRSVGMTEKEFRKMIRCESILYGT 762

Query: 79  FSAVIGIILGTALDYGIHLLFMGALDADWVFPWYSIGIAFAGSMITXXXXLATIGPMYRL 138
            +   G+ +G AL YG++ +F+G ++  +  PW  I IA A   +     +     + + 
Sbjct: 763 KALAFGVPVGVALSYGMYKVFVGIIEVPYTLPWKEILIAVAAVFLIIFWTMRY--SVKKA 820

Query: 139 NKVSIVDALRSVN 151
            K +I++ +RS N
Sbjct: 821 EKQNIIETIRSEN 833


>C3IJ92.1 C3IJ92_BACTU ABC transporter permease protein
          Length = 802

 Score =  102 bits (255), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 83/130 (63%), Gaps = 2/130 (1%)

Query: 20  IFFYGFIGVIVLIAFLNIINTVSTNLILRTNEFATLKAIGMTQKEVRKMIILEGVFYGLF 79
           I  YGFI VI LI  +NI+NT++ ++I+R  E A LK+IGM+QK+++KMI  EG+ YGLF
Sbjct: 674 ILGYGFIAVITLIGCVNILNTITVSIIMRRKELAALKSIGMSQKDLKKMITYEGLLYGLF 733

Query: 80  SAVIGIILGTALDYGIHLLFMGALDADWVFPWYSIGIAFAGSMITXXXXLATIGPMYRLN 139
            ++ GI  G  L Y +++     +  +W+ P+ SI I F  +++     +A + P+ ++ 
Sbjct: 734 GSIQGIFFGCMLSYILYVALSNMVSFEWIIPYQSIFITFITALL--ISYVAVLIPLRKIQ 791

Query: 140 KVSIVDALRS 149
           K +++D +R 
Sbjct: 792 KDNVIDVIRE 801


>Q3ELV4.1 Q3ELV4_BACTI ABC transporter permease protein
          Length = 792

 Score =  102 bits (255), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 83/130 (63%), Gaps = 2/130 (1%)

Query: 20  IFFYGFIGVIVLIAFLNIINTVSTNLILRTNEFATLKAIGMTQKEVRKMIILEGVFYGLF 79
           I  YGFI VI LI  +NI+NT++ ++I+R  E A LK+IGM+QK+++KMI  EG+ YGLF
Sbjct: 664 ILGYGFIAVITLIGCVNILNTITVSIIMRRKELAALKSIGMSQKDLKKMITYEGLLYGLF 723

Query: 80  SAVIGIILGTALDYGIHLLFMGALDADWVFPWYSIGIAFAGSMITXXXXLATIGPMYRLN 139
            ++ GI  G  L Y +++     +  +W+ P+ SI I F  +++     +A + P+ ++ 
Sbjct: 724 GSIQGIFFGCMLSYILYVALSNMVSFEWIIPYQSIFITFITALL--ISYVAVLIPLRKIQ 781

Query: 140 KVSIVDALRS 149
           K +++D +R 
Sbjct: 782 KDNVIDVIRE 791


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.145    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 768,296,178
Number of extensions: 28609607
Number of successful extensions: 117978
Number of sequences better than 1.0e-05: 467
Number of HSP's gapped: 118236
Number of HSP's successfully gapped: 499
Length of query: 151
Length of database: 3,060,696,203
Length adjustment: 113
Effective length of query: 38
Effective length of database: 1,996,121,508
Effective search space: 75852617304
Effective search space used: 75852617304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)