BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0086.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZCV4.1 C0ZCV4_BREBN Putative uncharacterized protein 153 9e-36 B1HSK4.1 B1HSK4_LYSSC Putative uncharacterized protein 98 5e-19 A3I7B1.1 A3I7B1_9BACI Autolysin 72 3e-11 B1HWJ9.1 B1HWJ9_LYSSC Putative uncharacterized protein 67 8e-10 A3IDU0.1 A3IDU0_9BACI Putative uncharacterized protein 65 3e-09 >C0ZCV4.1 C0ZCV4_BREBN Putative uncharacterized protein Length = 365 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 80/194 (41%), Positives = 114/194 (58%), Gaps = 12/194 (6%) Query: 10 LNVEPYTQWEPGVFSPGSACGPATMAALMEYWHTRRGCSLIPGAGHFQSKAAHINYIYSH 69 LNV +TQWE GV +P S+CGPAT+AA+ EYW +++G I G +F ++ IN +Y + Sbjct: 180 LNVTRFTQWEDGVNNPASSCGPATIAAIAEYWRSKKGFDTIDGLDYF-TRTEMINAVYKY 238 Query: 70 HGGTPWGMSARGFAKGLQDYLGAALPRENGKPFSVSLFNNMQRYQAEIDAKRPVAVKFDK 129 HGG +GMS GL+ Y+ R + S FN+ Y+ EI RP+AVKFD+ Sbjct: 239 HGGKSYGMSVSNVRSGLKSYIN----RGHTHTVSTDSFNSFSTYKYEIGRSRPLAVKFDQ 294 Query: 130 WFS-LRWRGSYAYDYHWVLGSGY--DMTDAAAGPVLIVQDNGMRHKNGGFTPGRERRIPY 186 +F+ YAYDYHW +G GY D TD L +QDNG+ + +G + +E I Y Sbjct: 295 YFTFFEPDAEYAYDYHWTVGVGYLEDGTD----KYLYIQDNGIGYTDGTWDWSKELYIDY 350 Query: 187 LPNRSILTMVALHI 200 N+ I+TMV+L + Sbjct: 351 TTNKPIITMVSLEV 364 >B1HSK4.1 B1HSK4_LYSSC Putative uncharacterized protein Length = 147 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 83/141 (58%), Gaps = 10/141 (7%) Query: 7 GIRLNVEP-YTQWEPGVFSP--GSACGPATMAALMEYWHTRRGCS-LIPGAGHFQSKAAH 62 G +L P ++Q++ V S SACGP T+A +++YWH +G S L + +K A Sbjct: 12 GSKLLSSPKFSQYDKDVKSSYQTSACGPTTIAVILQYWHDSKGKSKLQVWNSGYSTKGAF 71 Query: 63 INYIYSHHGGTPWGMSARGFAKGLQDYLGAALPRENGKPFSVSLFNNMQRYQAEIDAKRP 122 IN +Y++HGGT + MS G GL++ + A G + S FNN Y+ EID RP Sbjct: 72 INSMYANHGGTFYSMSVNGMRSGLENEVIA-----RGYAATTSSFNNFFSYKTEIDNNRP 126 Query: 123 VAVKFDKWFSLRWRGSYAYDY 143 VAVKFDKWFS +W + +Y+Y Sbjct: 127 VAVKFDKWFS-KWEPNASYEY 146 >A3I7B1.1 A3I7B1_9BACI Autolysin Length = 128 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/138 (40%), Positives = 74/138 (53%), Gaps = 18/138 (13%) Query: 66 IYSHHGGTPWGMSARGFAKGLQDYLGAALPRENGKPFSVSLFNNMQRYQAEIDAKRPVAV 125 +Y++ GGT +GMS G GL++ A+ R G S S FNN Y+ EID RP+AV Sbjct: 1 MYANRGGTFYGMSVNGVRSGLEN---KAIAR--GYSASSSSFNNFFSYKTEIDNNRPLAV 55 Query: 126 KFDKWFSL-RWRGSYAYDYHWVLGSGYDMTDAAAGPVLIVQDNGMRHKNGGFTPGRE-RR 183 KFDK+F+L YAYDYHW G GY A+ G +L VQ P R Sbjct: 56 KFDKYFTLFEPNADYAYDYHWTPGLGY--IYASTGTMLRVQT---------LAPNSTIRD 104 Query: 184 IPYLPNRSILTMVALHID 201 I Y N +I++MV+ I+ Sbjct: 105 INYNVNSAIISMVSFSIN 122 >B1HWJ9.1 B1HWJ9_LYSSC Putative uncharacterized protein Length = 185 Score = 67.4 bits (163), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 77/174 (44%), Gaps = 33/174 (18%) Query: 26 GSACGPATMAALMEYWHTRRGCSLIPGAGHFQSKAAHINYIYSHHGGTPWGMSARGFAKG 85 SACGP T+ ++ Y A IN +Y G T G+ + Sbjct: 41 NSACGPTTVHVILNY---------------LNGSAPSINELYKQLGSTKIGLFKWRLIRK 85 Query: 86 LQDYLGAALPRENGKPFSVSLFNNMQRYQAEIDAKRPVAVKFDKWFSLRWRG-SYAYDYH 144 L+ + R + SL +Q EIDA RPVA++FD++FS RWR + + YH Sbjct: 86 LRQLYPSWDVR------TCSLKEALQ----EIDAGRPVAMRFDRYFSFRWRDQTSTFAYH 135 Query: 145 WVLGSGYDMTDAAAGPVLIVQDNGMRHKNGGFTPGRERRIPYLPNRSILTMVAL 198 WV GYD+ + LI DNG +++ R++ Y N +L+ V + Sbjct: 136 WVPLIGYDIKNNQLW--LIFHDNGTSNRDSII-----RQVLYQNNEKVLSFVKM 182 >A3IDU0.1 A3IDU0_9BACI Putative uncharacterized protein Length = 185 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 33/174 (18%) Query: 26 GSACGPATMAALMEYWHTRRGCSLIPGAGHFQSKAAHINYIYSHHGGTPWGMSARGFAKG 85 SACGP T+ ++ Y A IN +Y G T G+ + Sbjct: 41 NSACGPTTIHVMLNY---------------LNGTAPSINELYKQLGSTKIGLFKWRLIRN 85 Query: 86 LQDYLGAALPRENGKPFSVSLFNNMQRYQAEIDAKRPVAVKFDKWFSLRWRG-SYAYDYH 144 L+ + R + SL +Q EIDA RPVA++FD++FS RWR + + YH Sbjct: 86 LRRLYPSWDVR------TCSLKEALQ----EIDAGRPVAMRFDRYFSFRWRDQTSTFAYH 135 Query: 145 WVLGSGYDMTDAAAGPVLIVQDNGMRHKNGGFTPGRERRIPYLPNRSILTMVAL 198 WV GYD+ + LI DNG +++ R+ Y N +L+ V + Sbjct: 136 WVPLIGYDIRNDQLN--LIFHDNGTANRDSII-----RQALYQHNEKVLSFVKM 182 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,384,127,549 Number of extensions: 60037843 Number of successful extensions: 110011 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 109999 Number of HSP's successfully gapped: 5 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)