BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0085.p (1048 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6Y4.1 B3K6Y4_9BACI Sensor protein EC=2.7.13.3 653 0.0 Q1IJ91.1 Q1IJ91_ACIBL Sensor protein EC=2.7.13.3 355 1e-95 C0V055.1 C0V055_9BACT PAS domain S-box 350 3e-94 Q2W1N3.1 Q2W1N3_MAGMM Sensor protein EC=2.7.13.3 339 8e-91 B3E2P8.1 B3E2P8_GEOLS Sensor protein EC=2.7.13.3 334 3e-89 >B3K6Y4.1 B3K6Y4_9BACI Sensor protein EC=2.7.13.3 Length = 1004 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/694 (51%), Positives = 463/694 (66%), Gaps = 23/694 (3%) Query: 188 PDDVEGMDQS-----QGLLESKTYIRRLRHKDGHYLWFETSFHVIHDENNEIVRIMGIGR 242 P+D E ++Q QG + Y R++ KDG + V + ++G+ + Sbjct: 306 PEDRERLEQVVRTAVQGRADEIIY--RIQLKDGQIRTIRAQWEVTVTNEGRPMEMVGMAQ 363 Query: 243 NVTSR---------KQNEEALAAAQRVAKIGSWVWDLSKGRLVFSEELQRMLHYSTGTDV 293 ++T + +N+ L + I D L S +L Y V Sbjct: 364 DITEQVMIEQQSLENENKYKLITENSLDFISRSTIDCFTF-LYCSPSCYALLGYRPEEMV 422 Query: 294 KYETFLSLVHPDDLELLKAGVERAVKKGESGESSYRLVLPDA--TLLTVNIQWDVTRGPT 351 TF V+ +D+ L+ +E ++ ++R + D VN ++ T+G Sbjct: 423 GTSTF-DYVYAEDIAPLQDYLENCLEGKMLTPITFRYIHKDGRHIWFEVNCKYISTQG-- 479 Query: 352 GKPVQLIGMMQDITERRQMEQQLRESEQRYKSLFEYNPSAVYSMNLNGDYLSANANLEEL 411 G+ ++I + +DI+ER+ ME +L+ESEQRY+SLFEYNPSAVYSMNL+GDY++AN NL+EL Sbjct: 480 GQKNEIISIARDISERKLMEFKLKESEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQEL 539 Query: 412 TGYTLDELIGMYFGPIVHEKDIEKTLHHFKLASQGEPQSYDLTLIHKDGHLVEINTLNIP 471 TGYTLDELIGMYFGPIV EKD+ +TL HF A +G PQSYDLT+IHKDG +EINT+NIP Sbjct: 540 TGYTLDELIGMYFGPIVAEKDMARTLFHFNQAKEGIPQSYDLTIIHKDGRPIEINTINIP 599 Query: 472 IIVDKQVVGVYGISRDITERIRYTEQIEKLSNEYTLILNAVSEGIFGLDTEGRITFINPA 531 I VD +VVGVYGI+RDITERIR E+I+KLS E TL+LN VSEGI GLD G++ FINPA Sbjct: 600 IFVDDEVVGVYGITRDITERIRTMEEIKKLSRELTLLLNTVSEGIIGLDIHGQVAFINPA 659 Query: 532 GAHMLGFEQDEIMGRSYLNHIGQTASDAVHYRMEASPLIRVIQAGESQRSMDAVLWRKDG 591 GA ML +E +GR I + D YR E SPL++ ++ G + VLWR DG Sbjct: 660 GAAMLDYEPATTIGRPCDQIIKEIRHDGTFYRGEDSPLVQAVKQGIPLSRAEIVLWRGDG 719 Query: 592 SSFLAEYQATPLFDKGERKGAVVVFRDITNEQEIIRAKESAEKADQAKSEFLAVMSHELR 651 +SFLA+YQ P++D+GERKGAV+VFRDIT+E+EIIRAKE+AE+ADQAK+EFL +MSHELR Sbjct: 720 TSFLADYQVNPIWDQGERKGAVMVFRDITDEKEIIRAKENAERADQAKTEFLTMMSHELR 779 Query: 652 TPMNGIIGMTDLLAETDLNEEQRGYAEXXXXXXXXXXXXXNEILDFSKIEAGKMTLMHEP 711 TPMNGIIGM +LL+ T+L+E+Q+ Y NEILDFSKIE G MTL HEP Sbjct: 780 TPMNGIIGMIELLSTTELDEDQQNYIHILMESSGSLLHILNEILDFSKIETGNMTLNHEP 839 Query: 712 VSVESVMGIVTELFSPKAKEKNILLSSRI-AEDVPELIMGDADRLRQVLVNLVSNAVKFT 770 + + S++ +V +LFS KAKEK + LS I + +VP++I+GDA RLRQVLVNL+SNA+KFT Sbjct: 840 IDLRSLLEVVVDLFSAKAKEKGLSLSFNINSANVPDVIIGDALRLRQVLVNLISNAIKFT 899 Query: 771 EEGQVSIGVETEFCPNAKKLSLKFSVHDTGIGIPSEKQPQLFQSFSQLHPSINRKYGGTG 830 EG +++ VE ++ +L F V DTGIGI E Q QLF SFSQLHPS+NRKYGGTG Sbjct: 900 HEGSITLNVEGLRRTGTQEFTLAFQVKDTGIGIAPELQHQLFTSFSQLHPSLNRKYGGTG 959 Query: 831 LGLAICKRLVELMGGAIGVESVEGKGSKFFFTLP 864 LGLAI K+LVELMGG IGVES E GS F+FT+P Sbjct: 960 LGLAISKKLVELMGGVIGVESRENVGSSFYFTIP 993 Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 192/641 (29%), Positives = 311/641 (48%), Gaps = 39/641 (6%) Query: 32 VNPAFCHTLGCSEQEFLAGGLLHNTVAQQEGIQQIDINLLIGELASSPERSLVKEKKFLT 91 VN FC + L V QQI + L P +L +E F+ Sbjct: 34 VNDRFCEITESKRSDLLQLKPSEIQVLSNLSFQQI-----LQSLIYDPTSTLSRESYFIR 88 Query: 92 RSGRTVWLL--LTFVKAAAGQACSHIIVYAEDITDRKIADQLTVDSRD-LYDLFIKDDQT 148 + GR V + ++ ++ + I+ E T ++ + D L L K Q Sbjct: 89 QDGRQVHVAVSISLLEPPSRDRTPWIMCCLEPGTVQEGTTLPPIIKNDELLALISKSGQD 148 Query: 149 MISFTLPDGTLSFISPSSQLQIGFAPEEIVGRNRLEFYHPDDVEGMDQSQGLL-ESKTYI 207 +IS + DG + +ISPS+ +G+ EE++G++R ++YH D E M + L E+ +++ Sbjct: 149 LISISSADGIIEYISPSATDILGYTQEEMMGQHRGKYYHQVDSEQMKEPGKLFSENDSFV 208 Query: 208 RRLRHKDGHYLWFETSFHVIHDENNEIVRIMGIGRNVTSRKQNEEALAAAQRVAKIGSWV 267 RR+RHK+GHYLWFETSF +I EI +++ IGRN+T RK +E+ LA AQR+AKIGSW Sbjct: 209 RRIRHKEGHYLWFETSFQLIRGAQGEIDKVLAIGRNITKRKTDEDTLAHAQRIAKIGSWR 268 Query: 268 WDLSKGRLVFSEELQRMLHYS-TGTDVKYETFLSLVHPDDLELLKAGVERAVKKGESGES 326 WDL L +S+E++R+ Y + ++T +SLV P+D E L+ V AV +G + E Sbjct: 269 WDLITHTLTYSDEMRRIYGYQINAIEPNHDTLMSLVIPEDRERLEQVVRTAV-QGRADEI 327 Query: 327 SYRLVLPDATLLTVNIQWDVTRGPTGKPVQLIGMMQDITERRQMEQQLRESEQRYKSLFE 386 YR+ L D + T+ QW+VT G+P++++GM QDITE+ +EQQ E+E +YK + E Sbjct: 328 IYRIQLKDGQIRTIRAQWEVTVTNEGRPMEMVGMAQDITEQVMIEQQSLENENKYKLITE 387 Query: 387 YNPSAVYSMNLNG-DYLSANANLEELTGYTLDELIGMYFGPIVHEKDIEKTLHHFKLASQ 445 + + ++ +L + + L GY +E++G V+ +DI + + + Sbjct: 388 NSLDFISRSTIDCFTFLYCSPSCYALLGYRPEEMVGTSTFDYVYAEDIAPLQDYLENCLE 447 Query: 446 GE---PQSYDLTLIHKDGHLV--EINTLNIPIIVDKQVVGVYGISRDITERIRYTEQIEK 500 G+ P ++ IHKDG + E+N I Q + I+RDI+ER ++++ Sbjct: 448 GKMLTPITF--RYIHKDGRHIWFEVNCKYIS-TQGGQKNEIISIARDISERKLMEFKLKE 504 Query: 501 LSNEYTLILNAVSEGIFGLDTEGRITFINPAGAHMLGFEQDEIMGRSYLNHIGQTASDAV 560 Y + ++ ++ +G N + G+ DE++G + V Sbjct: 505 SEQRYRSLFEYNPSAVYSMNLDGDYITANQNLQELTGYTLDELIGMYF--------GPIV 556 Query: 561 HYRMEASPLIRVIQAGES-QRSMDAVLWRKDGSSFLAEYQATPLFDKGERKGAVVVFRDI 619 + A L QA E +S D + KDG P+F E G + RDI Sbjct: 557 AEKDMARTLFHFNQAKEGIPQSYDLTIIHKDGRPIEINTINIPIFVDDEVVGVYGITRDI 616 Query: 620 TNEQEIIRAKESAEKADQAKSEFLAVMSHELRTPMNGIIGM 660 T E IR E +K + + L +S GIIG+ Sbjct: 617 T---ERIRTMEEIKKLSRELTLLLNTVSE-------GIIGL 647 >Q1IJ91.1 Q1IJ91_ACIBL Sensor protein EC=2.7.13.3 Length = 1326 Score = 355 bits (911), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 235/623 (37%), Positives = 327/623 (52%), Gaps = 67/623 (10%) Query: 422 MYFGPIVHEKDIEKTLHHFKLASQGEPQSYDLTLIHKDGHLVEINTLNIPIIVDKQVVGV 481 ++F PI ++ + +LAS G + + L+H L I ++ +++ Sbjct: 376 LWFVPITTSDEV---IGVVELASAGTLTAEQIELLH---------ALLPAIALNLEILNA 423 Query: 482 YGISRDITERIRYTE-QIEKLSNEYTLILNAVSEGIFGLDTEGRITFINPAGAHMLGFEQ 540 +R + ER + +I + + LIL +V EGI G+D +G ITFINPAGA MLG++Q Sbjct: 424 NLATRKLLERTQQQAIEIAETEEKSRLILGSVDEGIAGMDAKGYITFINPAGADMLGYDQ 483 Query: 541 DEIMGRSYLNHIGQTASDAVHYRMEASPLIRVIQAGESQRSMDAVLWRKDGSSFLAEYQA 600 I+G + I SD Y + P+ R GE+ D VLWRKDG +F AEY A Sbjct: 484 AGIVGAHLHSTIHYAHSDGSPYSRDDCPMYRTAITGEACAVDDEVLWRKDGGAFPAEYAA 543 Query: 601 TPLFDKGERKGAVVVFRDIT----NEQEIIRAKESAEKADQAKSEFLAVMSHELRTPMNG 656 TP+ G G VV FRDIT NE E+ RA+E+AE A + KS+FLA MSHE+RTPMN Sbjct: 544 TPVLKDGRAVGTVVAFRDITERKKNEAELRRAREAAEDATRTKSDFLANMSHEIRTPMNA 603 Query: 657 IIGMTDLLAETDLNEEQRGYAEXXXXXXXXXXXXXNEILDFSKIEAGKMTLMHEPVSVES 716 IIGM+ L +T+L+ +QR Y N+ILDFSKIEAGK+ + S+E Sbjct: 604 IIGMSHLALKTNLSPQQRDYLNKIQISSHHLLGVINDILDFSKIEAGKLNVESIDFSLEK 663 Query: 717 VMGIVTELFSPKAKEKNILLSSRIAEDVPELIMGDADRLRQVLVNLVSNAVKFTEEGQVS 776 V+ + L KA K + L I+ DVP ++GD RL Q+L N SNAVKFTE G++ Sbjct: 664 VLETLANLIGEKASAKGLELIFDISPDVPHNLIGDPLRLGQILTNYASNAVKFTEHGEIV 723 Query: 777 IGVETEFCPNAKKLSLKFSVHDTGIGIPSEKQPQLFQSFSQLHPSINRKYGGTGLGLAIC 836 IG + + + + L L F+V DTG+G+ +E++ +LFQSF Q S RK+GGTGLGLAI Sbjct: 724 IGAKVQERTDDEVL-LYFAVRDTGLGLTAEQKARLFQSFQQADTSTTRKHGGTGLGLAIS 782 Query: 837 KRLVELMGGAIGVESVEGKGSKFFFTLPVDPGGEWEENGAEDHELAEVLYTPDSGENTAA 896 K+L LM G +GVES GKGS F+FT + G + Y P S Sbjct: 783 KQLSALMHGEVGVESEPGKGSTFWFTARMGIGQSKADK-----------YLPVSD----- 826 Query: 897 YAGRKXXXXXXXXXXXXXXXXXEAKYGPLRILVAEDHPVNQRLILTMLEKRGYKADLAEN 956 GR R+LV +D+ ++++ ML ++ A Sbjct: 827 LRGR-------------------------RVLVVDDNESARKVLDEMLSSMTFQVTTANG 861 Query: 957 GQQALQAVLRQ------PYDLVFMDVQMPVMSGLTAAAGIREQAPLNHQPFIVAVTAYAR 1010 G +A+ V RQ PYD+ F+D +MP M G+ A IR L P +V VTAY R Sbjct: 862 GHEAIDQV-RQAAQAESPYDIAFLDWRMPGMDGIETAKAIRGLG-LERSPRMVMVTAYGR 919 Query: 1011 PEDRERCLAVGMEDFVSKPFLSS 1033 E G+ED + KP +S Sbjct: 920 EEVMRGAAEAGIEDVLIKPVGAS 942 Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 927 ILVAEDHPVNQRLILTMLEKRGYKADLAENGQQALQAVLRQPYDLVFMDVQMPVMSGLTA 986 +L+AED+ NQ++ +L + G ++A +G+QAL + + YD V MD+QMP M GL A Sbjct: 981 VLLAEDNEFNQQVATGLLNEVGVNVEIAGDGKQALARLAERTYDAVLMDMQMPEMDGLAA 1040 Query: 987 AAGIREQAPLNHQPFIVAVTAYARPEDRERCLAVGMEDFVSKPF 1030 IR+QA P I+A+TA A +D+ERC+A GM D ++KP Sbjct: 1041 TREIRKQARFKDLP-IIAMTANAMEQDKERCIAAGMNDHIAKPI 1083 >C0V055.1 C0V055_9BACT PAS domain S-box Length = 1363 Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 280/922 (30%), Positives = 453/922 (49%), Gaps = 111/922 (12%) Query: 158 TLSFISPSSQLQIGFAPEEIVGR--NRLEFYHPDDVEGMDQS-QGLLESKTYIR---RLR 211 +L F+S ++ G++ E++G + E HP+D+ + + +G+ R RLR Sbjct: 349 SLEFVSSYAREITGYSDAELLGGKVSLRELVHPEDLPAVTANLRGVSSPGQRYRLEYRLR 408 Query: 212 HKDGHYLWFETSFHVIHDENNEIVRIM-------GIGRNVTSRKQNEEALAAAQR----- 259 H+DG + E E + VR+ G+ +VT RK E+A+ QR Sbjct: 409 HRDGSLRFVE--------EYGQCVRVTEGMPLLEGLLTDVTDRKHAEQAVQQVQRRYQDI 460 Query: 260 VAKIGSWVWDLS-KGRLVFSE-ELQRMLHYSTGTDVKYETFLSLVHPDDLELLKAGVER- 316 +I ++ S GRL+ + L RML Y++ E LS V ++ +R Sbjct: 461 FERISEGIFQTSLDGRLLLANPALARMLGYASP-----EELLSEVQDVARQIYARPADRD 515 Query: 317 -----AVKKGESGESSYRLVLPDA--TLLTVNIQW--DVTRGPTGKPVQLI-GMMQDITE 366 +++GE + V D L+++ +W D RG +++I G QDIT+ Sbjct: 516 RYLRIMLEEGEVRDFELEAVRKDGEHIWLSISSRWLLDEARG-----MRIIEGTCQDITQ 570 Query: 367 RRQMEQQLRESEQRYKSLFEYNPSAVYSMNLNGDYLSANANLEELTGYTLDELIGMYFGP 426 R++ E+ LRES + + S F++ P + + +G +L N +L + GY+ EL+GM F Sbjct: 571 RKRAEEALRESMELFVSAFDHAPIGMALVATDGRWLRVNPSLCRMLGYSERELLGMTFQD 630 Query: 427 IVHEKDIEKTLHHFKLASQGEPQSYDL--TLIHKDGHLVEINTLNIPIIVDKQVVGVYGI 484 I H D+E L H + GE Y++ HK G +V L++ ++ D +Y + Sbjct: 631 ITHPDDLELDLQHVRQVLDGEIAQYEMEKRYYHKHGSIV-WALLSVSLVRDLDGQPLYFV 689 Query: 485 SR--DITERIRYTEQIEKLSNEYTLILNAVSEGIFGLDTEGRITFINPAGAHMLGFEQ-D 541 S+ DIT+R I + Y ++ A + + + +GR+ ++NPAGA MLG + Sbjct: 690 SQIQDITQRKEIERAITESEERYRRLVEAFPD-LIAIVQDGRVAYVNPAGARMLGAKDPQ 748 Query: 542 EIMGRSYLNHIGQTASDAVHYRMEASPLIRVIQAGESQRSMDAVLWRKDGSSFLAEYQAT 601 E++GRS L + V ++++ + + G S++ DG AE + Sbjct: 749 ELVGRSVLEFVHPERRGEVAAQIDS-----IGEGGPPPDSIEERFITLDGREIYAEVKVV 803 Query: 602 PLFDKGERKGAVVVFRDITNE----QEIIRAKESAEKADQAKSEFLAVMSHELRTPMNGI 657 P + +R + ++ RDIT +E+ RA++ A +A + KSEF+A MSHE+RTP+N I Sbjct: 804 PTSHE-DRPASQIIARDITESRRVAEELRRARDQAIEASRLKSEFVANMSHEIRTPLNAI 862 Query: 658 IGMTDLLAETDLNEEQRGYAEXXXXXXXXXXXXXNEILDFSKIEAGKMTLMHEPVSVESV 717 IGMT+LL +T L+E QR + + N+ILDFSKIEAGKM L + S+ Sbjct: 863 IGMTELLQDTPLSERQREFVQTIQTSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVSL 922 Query: 718 MGIVTELFSPKAKEKNILLSSRIAEDVPELIMGDADRLRQVLVNLVSNAVKFTEEGQVSI 777 + +E+ + A+ K I L + + +P ++GD RLRQVL+NL+SNAVKFTE+G+V + Sbjct: 923 VEGTSEMLAGAARGKGISLMTFVDPTIPRTLIGDPARLRQVLLNLLSNAVKFTEQGEVLL 982 Query: 778 GVETEFCPNAKKLSLKFSVHDTGIGIPSEKQPQLFQSFSQLHPSINRKYGGTGLGLAICK 837 V ++ ++ L F V DTGIGI S +LFQ F+Q S R+YGGTGLGL I K Sbjct: 983 RVLPHRAADS-EVELLFEVRDTGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTISK 1041 Query: 838 RLVELMGGAIGVESVEGKGSKFFFTLPVDPGGEWEENGAEDHELAEVLYTPDSGENTAAY 897 LVELMGG I ES G GS F FT ++ E +++ PD Sbjct: 1042 TLVELMGGTIWAESQPGVGSTFRFT------ARFKVAAMERSPTQQLVLPPD-------- 1087 Query: 898 AGRKXXXXXXXXXXXXXXXXXEAKYGPLRILVAEDHPVNQRLILTMLEKRGYKADLAENG 957 L +LV +D +++++ + LE + + A +G Sbjct: 1088 ---------------------------LHVLVVDDQAAHRQILRSYLESWHMRCEEAADG 1120 Query: 958 QQALQAVLRQPYDLVFMDVQMPVMSGLTAAAGIREQAPLNHQPFIVAVTAYARPEDRERC 1017 QA++ R+ +DL +D+ +P G A +R +P +V +TA+ ER Sbjct: 1121 AQAIEKAQREHFDLAILDLLLPDTDGFDLAQQLRRLSPSMK---LVLLTAHHEQGQGERA 1177 Query: 1018 LAVGMEDFVSKPFLSSDIERIL 1039 + G ++ KP S + +L Sbjct: 1178 VDAGFSAYLLKPIRQSQLMDVL 1199 Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 129/506 (25%), Positives = 216/506 (42%), Gaps = 39/506 (7%) Query: 25 QEGKW-LKVNPAFCHTL-GCSEQEFLAGGLLHNTVAQQEGIQQIDINLLIGELASSPERS 82 Q+ +W L+ ++ + G S+ E L G + + E + + NL SSP + Sbjct: 344 QDDRWSLEFVSSYAREITGYSDAELLGGKVSLRELVHPEDLPAVTANL---RGVSSPGQR 400 Query: 83 LVKEKKFLTRSG--RTVWLLLTFVKAAAGQACSHIIVYAEDITDRKIADQLTVDSRDLY- 139 E + R G R V V+ G ++ D+TDRK A+Q + Y Sbjct: 401 YRLEYRLRHRDGSLRFVEEYGQCVRVTEGMPLLEGLL--TDVTDRKHAEQAVQQVQRRYQ 458 Query: 140 DLFIKDDQTMISFTLPDGTLSFISPSSQLQIGFA-PEEIVGR----NRLEFYHPDDVEGM 194 D+F + + + +L DG L +P+ +G+A PEE++ R + P D Sbjct: 459 DIFERISEGIFQTSL-DGRLLLANPALARMLGYASPEELLSEVQDVARQIYARPAD---R 514 Query: 195 DQSQGLLESKTYIRRLR----HKDGHYLWFETSFHVIHDENNEIVRIMGIGRNVTSRKQN 250 D+ ++ + +R KDG ++W S + DE + I G +++T RK+ Sbjct: 515 DRYLRIMLEEGEVRDFELEAVRKDGEHIWLSISSRWLLDEARGMRIIEGTCQDITQRKRA 574 Query: 251 EEALAAAQRV-------AKIGSWVWDLSKGRLVFSEELQRMLHYSTGTDVKYETFLSLVH 303 EEAL + + A IG + L + L RML YS ++ TF + H Sbjct: 575 EEALRESMELFVSAFDHAPIGMALVATDGRWLRVNPSLCRMLGYSE-RELLGMTFQDITH 633 Query: 304 PDDLELLKAGVERAVKKGESG--ESSYRLVLPDATLLTVNIQWDVTRGPTGKPVQLIGMM 361 PDDLEL V R V GE E R +++ + + R G+P+ + + Sbjct: 634 PDDLELDLQHV-RQVLDGEIAQYEMEKRYYHKHGSIVWALLSVSLVRDLDGQPLYFVSQI 692 Query: 362 QDITERRQMEQQLRESEQRYKSLFEYNPSAVYSMNLNGDYLSAN-ANLEELTGYTLDELI 420 QDIT+R+++E+ + ESE+RY+ L E P + ++ +G N A L EL+ Sbjct: 693 QDITQRKEIERAITESEERYRRLVEAFPDLI-AIVQDGRVAYVNPAGARMLGAKDPQELV 751 Query: 421 GMYFGPIVHEKDIEKTLHHFKLASQG--EPQSYDLTLIHKDGHLVEINTLNIPIIVDKQV 478 G VH + + +G P S + I DG + +P + + Sbjct: 752 GRSVLEFVHPERRGEVAAQIDSIGEGGPPPDSIEERFITLDGREIYAEVKVVPTSHEDRP 811 Query: 479 VGVYGISRDITERIRYTEQIEKLSNE 504 I+RDITE R E++ + ++ Sbjct: 812 ASQI-IARDITESRRVAEELRRARDQ 836 Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 51/116 (43%), Positives = 70/116 (60%), Gaps = 3/116 (2%) Query: 927 ILVAEDHPVNQRLILTMLEKRGYKADLAENGQQALQAVLR--QPYDLVFMDVQMPVMSGL 984 IL+AED+PVN+RL LEK GY +NG++A++ + R Q Y LV MD QMP M G Sbjct: 1234 ILLAEDNPVNRRLATLQLEKLGYSVRTVDNGREAVEEMARRGQEYCLVLMDCQMPEMDGY 1293 Query: 985 TAAAGIRE-QAPLNHQPFIVAVTAYARPEDRERCLAVGMEDFVSKPFLSSDIERIL 1039 A IR + + I+A+TA A DRE CLA GM+D++SKP ++ +L Sbjct: 1294 EATRQIRRLETKSGRRTPIIALTANALEGDREACLAAGMDDYLSKPLTMGKLKAVL 1349 Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 106/193 (54%), Gaps = 17/193 (8%) Query: 4 DNRELLDYAFLMSPLGTGVLSQEGKWLKVNPAFCHTLGCSEQEFLAGGLLHNTVAQQEGI 63 ++ EL AF +P+G +++ +G+WL+VNP+ C LG SE+E L G+ + + + Sbjct: 580 ESMELFVSAFDHAPIGMALVATDGRWLRVNPSLCRMLGYSERELL--GMTFQDITHPDDL 637 Query: 64 QQIDI----NLLIGELASSPERSLVKEKKFLTRSGRTVWLLL--TFVKAAAGQACSHIIV 117 ++D+ +L GE+A EK++ + G VW LL + V+ GQ + + Sbjct: 638 -ELDLQHVRQVLDGEIAQYE-----MEKRYYHKHGSIVWALLSVSLVRDLDGQPL-YFVS 690 Query: 118 YAEDITDRKIADQLTVDSRDLYDLFIKDDQTMISFTLPDGTLSFISPSSQLQIGFA-PEE 176 +DIT RK ++ +S + Y ++ +I+ + DG +++++P+ +G P+E Sbjct: 691 QIQDITQRKEIERAITESEERYRRLVEAFPDLIAI-VQDGRVAYVNPAGARMLGAKDPQE 749 Query: 177 IVGRNRLEFYHPD 189 +VGR+ LEF HP+ Sbjct: 750 LVGRSVLEFVHPE 762 >Q2W1N3.1 Q2W1N3_MAGMM Sensor protein EC=2.7.13.3 Length = 1117 Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 230/657 (35%), Positives = 338/657 (51%), Gaps = 79/657 (12%) Query: 350 PTGKPVQLIGMMQDITERRQMEQQLRESEQRYKSLFEYNPSAVYSMNLNGDYLSANANLE 409 PTG P Q + +M+DI+ER+++E+++ ESE+R++ + + M + + + Sbjct: 184 PTGSP-QFVVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFSGQFT 242 Query: 410 ELTGYTLDELIGMYFGPIVHEKDIEKTLHHFKLASQGEPQSYDLTLIHK-----DGHLVE 464 E T D +G ++ + D + LA + + + H G + Sbjct: 243 EHTRTLPDHYVGRTRDEMISD-DTPAEVRRQNLADMAARRPFRDFVYHTREMDGPGRFLR 301 Query: 465 INTLNIPII-VDKQVVGVYGISRDITERIRYTE-------QIEKLSNEYTLILNAVSEGI 516 +N P+ + G G + DITE I E +IE+L+ IL +V +GI Sbjct: 302 VN--GKPVFDASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNSILESVDDGI 359 Query: 517 FGLDTEGRITFINPAGAHMLGFEQDEIMGRSYLNHIGQTASDAVH-YRMEASPLIRVIQA 575 G+D GR TF+N A A +L FE E++G L + A Y++ L+R+ Sbjct: 360 VGIDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDLHTAEKLYQI----LLRLT-- 413 Query: 576 GESQRSMDAVLWRKDGSSFLAEYQATPLFDKGERKGAVVVFRDITN----EQEIIRAKES 631 ES R A R+DGS EY A+P+ D+G + G V+ FRDIT E+++ AKE+ Sbjct: 414 -ESIRDDTASFKRRDGSPLPVEYIASPVMDRGNQVGVVLGFRDITQRRLVERQLREAKEA 472 Query: 632 AEKADQAKSEFLAVMSHELRTPMNGIIGMTDLLAETDLNEEQRGYAEXXXXXXXXXXXXX 691 AE ++ KSEFLA MSHE+RTPMNG+IGMT LL +T L+EEQR +AE Sbjct: 473 AEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEEQRHFAETIRDSGESLLTVI 532 Query: 692 NEILDFSKIEAGKMTLMHEPVSVESVMGIVTELFSPKAKEKNILLSSRIAEDVPELIMGD 751 N+ILDFSK+EAGK+ L + + ++ V ++ +P+A K I ++S I + L+ D Sbjct: 533 NDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSD 592 Query: 752 ADRLRQVLVNLVSNAVKFTEEGQVSIGVETEFCPNAKKLSLKFSVHDTGIGIPSEKQPQL 811 RLRQVL+NL NAVKFTE+G VSI V P+A ++ +F V DTGIGIP E Q +L Sbjct: 593 PGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAPAMA-RFDVRDTGIGIPPEAQGRL 651 Query: 812 FQSFSQLHPSINRKYGGTGLGLAICKRLVELMGGAIGVESVEGKGSKFFFTLPVDPGGEW 871 F FSQ+ S R+YGGTGLGLAI +RL ELMGG +GVES G+GS+F+ TLP++ Sbjct: 652 FSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLPLE----- 706 Query: 872 EENGAEDHELAEVLYTPDSGENTAAYAGRKXXXXXXXXXXXXXXXXXEAKYGPLRILVAE 931 L P S R+LV + Sbjct: 707 -------------LLAPQSA--------------------------APPDLSGHRVLVVD 727 Query: 932 DHPVNQRLILTMLEKRGYKADLAEN-----GQQALQAVLRQPYDLVFMDVQMPVMSG 983 D+PVN +I L G + + G+ A + P+++ +D QMPV++G Sbjct: 728 DNPVNCDVIERQLRAFGVEVHACLDAGSGMGELTRAAAMGTPWEVAVVDSQMPVVTG 784 Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/106 (49%), Positives = 67/106 (63%) Query: 925 LRILVAEDHPVNQRLILTMLEKRGYKADLAENGQQALQAVLRQPYDLVFMDVQMPVMSGL 984 LRILVAED+PVNQ++ L +L K G+ D+ +G +AL+AV PYD+V MDVQMP M GL Sbjct: 868 LRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMDGL 927 Query: 985 TAAAGIREQAPLNHQPFIVAVTAYARPEDRERCLAVGMEDFVSKPF 1030 A IR Q IVA+TA A D + C GM+ ++SKP Sbjct: 928 EATRAIRALPLAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPI 973 >B3E2P8.1 B3E2P8_GEOLS Sensor protein EC=2.7.13.3 Length = 1195 Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 238/690 (34%), Positives = 353/690 (51%), Gaps = 55/690 (7%) Query: 371 EQQLRESEQRYKSLFEYNPSAVYSMNLNGDYLSANANLEELTGYTLDELIGMYFGPIVHE 430 ++ +R+ + F + +L+G + N + EE GY LDEL G F +H Sbjct: 326 DESIRKLNEELDRFFSMALDMLCIADLDGHFKRLNRSWEETLGYALDELTGKQFLEFIHP 385 Query: 431 KDIEKTLHHFKLASQGEPQSYDLTLIH----KDGHLVEINTLNIPIIVDKQVVGVYGISR 486 DI TL S + L I+ KDG I + P +Y +R Sbjct: 386 DDIPATLAAL---SDLDANKQILNFINRYRCKDGSYRWIEWRSTPC-----ANLIYAAAR 437 Query: 487 DITERIRYTEQIEKLSNEYTLILNAVSEGIFGL-DTEGRITFINPAGAHMLGFEQDEIMG 545 DITER +E+ S + +L + G+ G D + F N A G +++ G Sbjct: 438 DITERKNAEAALEE-SERFMRVLTDIIPGMVGYWDRDLHNRFANIAYLEWFGKTSEQMRG 496 Query: 546 RSYLNHIGQTASDAVHYRMEASPLIRVIQAGESQRSMDAVLWRKDGSSFLAEYQATPLFD 605 HI D + + E P +R GE QR + L + DGS P Sbjct: 497 ----IHIRDLMGDELFAKNE--PYMRAALNGERQR-FERTLTKADGSIGYTWAHYIPDIA 549 Query: 606 KGERKGAVVVFRDIT----NEQEIIRAKESAEKADQAKSEFLAVMSHELRTPMNGIIGMT 661 G+ +G V+ DIT + ++ + + AE A++AKSEFLA MSHE+RTPMN I+G+T Sbjct: 550 NGQVRGFFVLVSDITELKLTQLQLEQRTKEAEAANRAKSEFLANMSHEIRTPMNAILGLT 609 Query: 662 DLLAETDLNEEQRGYAEXXXXXXXXXXXXXNEILDFSKIEAGKMTLMHEPVSVESVMGIV 721 L+ ET+L+ QR + N+ILD+SKIEAG++ + P+SVE V+ Sbjct: 610 RLVLETELDPRQRDFLLKVYNASQALMEILNDILDYSKIEAGRVEIEQLPISVEEVVRNT 669 Query: 722 TELFSPKAKEKNILLSSRIAEDVPELIMGDADRLRQVLVNLVSNAVKFTEEGQVSIGVET 781 LF K +EK + +A +P ++ GD RL QVL NLV NAVKFTE G++ I VE Sbjct: 670 MGLFRAKIEEKGLATIMELASSLPAVLQGDPMRLSQVLNNLVGNAVKFTESGEIRIMVE- 728 Query: 782 EFCPNAKKLSLKFSVHDTGIGIPSEKQPQLFQSFSQLHPSINRKYGGTGLGLAICKRLVE 841 + + + ++L FSV DTGIG+ ++ +LFQ+F+Q +I+RKYGGTGLGL IC+RLV Sbjct: 729 QIQEDCRTVTLCFSVQDTGIGLDKDETARLFQAFTQADSTISRKYGGTGLGLTICQRLVG 788 Query: 842 LMGGAIGVESVEGKGSKFFFTL---PVDPGGEWEENGAEDHELAE-VLYTPDSGENTAAY 897 LMGG+I V S++G GS F F + V PG + + H A+ + TPDS +A+ Sbjct: 789 LMGGSISVSSLKGVGSTFSFVIQMGKVPPGTQ----AKKLHAFADGAMGTPDSLAVLSAH 844 Query: 898 AGRKXXXXXXXXXXXXXXXXXEAKYGPLRILVAEDHPVNQRLILTMLEKRGYKADLAENG 957 + + LR+L+ ED+ +NQ + +L++ G + LA++G Sbjct: 845 QKK-------------------LELNRLRVLLVEDNRINQEVAAEILQQYGAQVTLADHG 885 Query: 958 QQALQAVLRQPYDLVFMDVQMPVMSGLTAAAGIREQAPLNHQPFIVAVTAYARPEDRERC 1017 AL+ + +D+V MD+ MPVM G A IRE P ++A+TA +DRERC Sbjct: 886 AAALELLTGPGFDVVLMDLHMPVMDGFEATRKIRELYDSATLP-VIAMTAAVLQDDRERC 944 Query: 1018 LAVGMEDFVSKPFLSSDIERILRERMEKIS 1047 A GM DFV+KP ++ +L+ R +K S Sbjct: 945 TAAGMVDFVAKPINPLELVTVLK-RFQKTS 973 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 77/316 (24%), Positives = 125/316 (39%), Gaps = 37/316 (11%) Query: 223 SFHVIHDENNEIVRIMGIGRNVTSRKQNEEA---LAAAQRVAKIGSWVWDLSKGRLVFSE 279 + H H + E R + + RK NEE + A + I + + E Sbjct: 307 TLHFFHKRHEEFTR-QKAASDESIRKLNEELDRFFSMALDMLCIADLDGHFKRLNRSWEE 365 Query: 280 ELQRMLHYSTGTDVKYETFLSLVHPDDLELLKAGVE---------RAVKKGESGESSYRL 330 L L TG + FL +HPDD+ A + + + + SYR Sbjct: 366 TLGYALDELTG-----KQFLEFIHPDDIPATLAALSDLDANKQILNFINRYRCKDGSYRW 420 Query: 331 VLPDATLLTVNIQWDVTRGPTGKPVQLIGMMQDITERRQMEQQLRESEQRYKSLFEYNPS 390 I+W T P + +DITER+ E L ESE+ + L + P Sbjct: 421 -----------IEWRST--PCANLI--YAAARDITERKNAEAALEESERFMRVLTDIIPG 465 Query: 391 AV--YSMNLNGDYLSANANLEELTGYTLDELIGMYFGPIVHEKDIEKTLHHFKLASQGEP 448 V + +L+ + AN E G T +++ G++ ++ ++ K + + A GE Sbjct: 466 MVGYWDRDLHNRF--ANIAYLEWFGKTSEQMRGIHIRDLMGDELFAKNEPYMRAALNGER 523 Query: 449 QSYDLTLIHKDGHLVEINTLNIPIIVDKQVVGVYGISRDITERIRYTEQIEKLSNEYTLI 508 Q ++ TL DG + IP I + QV G + + DITE Q+E+ + E Sbjct: 524 QRFERTLTKADGSIGYTWAHYIPDIANGQVRGFFVLVSDITELKLTQLQLEQRTKEAEAA 583 Query: 509 LNAVSEGIFGLDTEGR 524 A SE + + E R Sbjct: 584 NRAKSEFLANMSHEIR 599 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 6,012,694,509 Number of extensions: 254990010 Number of successful extensions: 889685 Number of sequences better than 1.0e-05: 36411 Number of HSP's gapped: 831302 Number of HSP's successfully gapped: 44058 Length of query: 1048 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 902 Effective length of database: 1,685,228,013 Effective search space: 1520075667726 Effective search space used: 1520075667726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 137 (57.4 bits)