BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0084.p
         (253 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6X4.1 B3K6X4_9BACI Putative uncharacterized protein                139   2e-31
B1DKH9.1 B1DKH9_9BACL Putative uncharacterized protein                 70   1e-10

>B3K6X4.1 B3K6X4_9BACI Putative uncharacterized protein
          Length = 271

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 144/252 (57%), Gaps = 3/252 (1%)

Query: 1   LPLAGKAAASGTELTPSIQAAFDLTAAVADSSSRSKLNSQYSELSALSAQYNSREEQIRK 60
           +P A  AA    E T S+QA  + TA  A  + RSKL  QY +  +   Q    +++I  
Sbjct: 22  IPFANAAA---IEFTDSVQAQLNATADRAGGTVRSKLKKQYDDFKSERKQVMDWDDRISS 78

Query: 61  LHESNAQSLLTVKEKIKNIDQDTVTRLTAAVVSTKARYQPLFDQYSALNKRISLLRGMRD 120
           L  +N       +++I  ID+D + RL   + + K++YQPLFD YSALNK+I+  + ++D
Sbjct: 79  LRYANEAKASETRKRISEIDKDKIRRLEDQLQAAKSKYQPLFDTYSALNKQIAAAKKLKD 138

Query: 121 KTLNSVLRAQSDAMKIVVQMARQDIRDQEARLKAAKETRTRKIAAARKTLAGIDSPQTSI 180
           K+L+ +L++Q+  MKI+V + R+DIR+++A L AAK+ RT K A  R  L+ ID  ++ I
Sbjct: 139 KSLSKMLQSQAGGMKILVALGREDIRNKQAALTAAKKERTSKAAKVRSILSEIDPYKSKI 198

Query: 181 KSQKSVISSLNKRLSADWSGFKSAIRKQNPXXXXXXXXXXXXGHRQIAAGKQKIIELEQK 240
           K  KS +++ NK ++ +W  FK+A++                   QI A K+ I   EQK
Sbjct: 199 KGDKSAMTTPNKLMTTEWKNFKAAVKANESARTSDALSRLLTLSGQILAKKKSIHTYEQK 258

Query: 241 VAGVIAAASKQI 252
           +  VI+ A+ Q+
Sbjct: 259 IESVISRANAQL 270


>B1DKH9.1 B1DKH9_9BACL Putative uncharacterized protein
          Length = 271

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 113/241 (46%)

Query: 4   AGKAAASGTELTPSIQAAFDLTAAVADSSSRSKLNSQYSELSALSAQYNSREEQIRKLHE 63
           A  A A+   L+ + Q  FD T A   S+  +KL S Y            ++ +I+   +
Sbjct: 22  AAVAEAAVHSLSATAQKQFDKTKAGLTSADAAKLQSLYQSFVQQQTVIGDKDTRIKTTAK 81

Query: 64  SNAQSLLTVKEKIKNIDQDTVTRLTAAVVSTKARYQPLFDQYSALNKRISLLRGMRDKTL 123
           +N +    +++KI+ ID+  +  L   V   K  YQPLF++Y A    +   R    K L
Sbjct: 82  TNDEKESELRQKIRLIDKAKLDSLDKKVAQLKNYYQPLFNRYEAAQAELKAARKFGIKEL 141

Query: 124 NSVLRAQSDAMKIVVQMARQDIRDQEARLKAAKETRTRKIAAARKTLAGIDSPQTSIKSQ 183
            + ++ + D ++I V+ A+++IR  ++ L +AK + + K+   R  L  I   +  I   
Sbjct: 142 TAAVQLKVDLLEISVKSAKEEIRAAQSALSSAKSSASDKMKRLRGQLDAITEEERKISVA 201

Query: 184 KSVISSLNKRLSADWSGFKSAIRKQNPXXXXXXXXXXXXGHRQIAAGKQKIIELEQKVAG 243
           KS IS  NK+ SA+WS    A+R  +               +QI   + KI   E+K+A 
Sbjct: 202 KSAISQQNKQKSAEWSDLLYALRSYDGKTSIRSLTTLTTVAKQITDQQVKIEGYEKKIAD 261

Query: 244 V 244
           +
Sbjct: 262 I 262


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.122    0.309 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,009,323,718
Number of extensions: 29834931
Number of successful extensions: 135121
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 135155
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 3,060,696,203
Length adjustment: 133
Effective length of query: 120
Effective length of database: 1,807,701,208
Effective search space: 216924144960
Effective search space used: 216924144960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)