BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0083.p (366 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A4IL93.1 A4IL93_GEOTN Spore coat protein 178 8e-43 B4BID9.1 B4BID9_9BACI Glycosyl transferase group 1 178 8e-43 Q67RC8.1 Q67RC8_SYMTH Putative lipopolysaccharide N-acetylglucos... 178 9e-43 B3K9Y1.1 B3K9Y1_9BACI Glycosyl transferase group 1 177 1e-42 Q67RC9.1 Q67RC9_SYMTH Putative lipopolysaccharide N-acetylglucos... 173 3e-41 >A4IL93.1 A4IL93_GEOTN Spore coat protein Length = 379 Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 187/376 (49%), Gaps = 18/376 (4%) Query: 1 MHICMIAPEQFPVPG--DGSVEICIWAVARKLARRHKVTIVSRKAPGLPDTDEQEQVRIV 58 M I MIA E+ PVP G+ +I + A A +AR+H VT++S + LPD ++ + Sbjct: 1 MKIAMIATEKLPVPPIRGGATQIYLDATAAIMARKHDVTVLSIRDRDLPDVEKNKNGVSY 60 Query: 59 RLVSGTPARYLASVLDYLETEHFDVIQVDNRPLLMSSIKRRHPYTPVVLFLHSLTFVPAE 118 R S Y+ V ++L TE +DVI V NRP + I+ P + +VL +H+ F + Sbjct: 61 RRFS--QETYIQEVANHLRTETYDVIHVCNRPRWIRHIREASPDSALVLSIHNEMFRDDK 118 Query: 119 SRIARSLARANL---IAVNSRSLQRKLARRFPGLGGIIRVVPLGADLSRFSPAELPEKQQ 175 A + N I S ++ + RFP G + V G D+ F P + ++ Sbjct: 119 ISYAEGVDCINAVKQIVTVSDYIKMTICDRFPQAIGKVATVYSGVDVETFQPKWTAQGEK 178 Query: 176 M----RRLYRLSPVFTVLFVGRVIPRKGVPVLIRAMRLLHKRLPAQLIIAGHGKPL---- 227 + RR L VLFVGR+ KG +L+ A+ + K+ P +I+ K Sbjct: 179 IYAAIRRELGLEGRKVVLFVGRLSKVKGAHLLLEALPSIIKKHPEAVIVFVGSKWFGDNE 238 Query: 228 ---YIRQLKAMARRLGVRAVFIGKIAHEDIHDLYHAADVFVCPSQRHESFGLVNVEAMAS 284 Y+R L + A+FI + E I LY AD+FVCPSQ E V+ EAMA+ Sbjct: 239 VNSYVRYLYTLGAMYENNAMFIQFVKPEQIPQLYTMADLFVCPSQWQEPLARVHYEAMAA 298 Query: 285 GLPVIASNNGGIREIIVSGHNGYLVQRYREASPFAKALLQLGRDPQLTARIGLQGRRDAL 344 GLP+I SN GG E+I +G NGY+V+ + +A + +L +P + ++G GR+ Sbjct: 299 GLPIITSNRGGNPEVIENGKNGYIVKDFSNPEAYAALINKLFDEPSSSIQMGKYGRQKVE 358 Query: 345 QNFGWQHTAAALEELY 360 + F W+ AA L Y Sbjct: 359 REFNWEVVAAKLLRAY 374 >B4BID9.1 B4BID9_9BACI Glycosyl transferase group 1 Length = 379 Score = 178 bits (451), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 187/376 (49%), Gaps = 18/376 (4%) Query: 1 MHICMIAPEQFPVPG--DGSVEICIWAVARKLARRHKVTIVSRKAPGLPDTDEQEQVRIV 58 M I MIA E+ PVP G+ +I + A A +AR+H VT++S + LPD ++ + Sbjct: 1 MKIAMIATEKLPVPPIRGGATQIYLDATAAIMARKHDVTVLSIRDRDLPDVEKNKNGVSY 60 Query: 59 RLVSGTPARYLASVLDYLETEHFDVIQVDNRPLLMSSIKRRHPYTPVVLFLHSLTFVPAE 118 R S Y+ V ++L TE +DVI V NRP + I+ P + +VL +H+ F + Sbjct: 61 RRFS--QETYIQEVANHLRTETYDVIHVCNRPRWIRHIREASPDSALVLSIHNEMFRDDK 118 Query: 119 SRIARSLARANL---IAVNSRSLQRKLARRFPGLGGIIRVVPLGADLSRFSPAELPEKQQ 175 A + N I S ++ + RFP G + V G D+ F P + ++ Sbjct: 119 ISYAEGVDCINAVKQIVTVSDYIKMTICDRFPQAIGKVATVYSGVDVETFQPKWTAQGEK 178 Query: 176 M----RRLYRLSPVFTVLFVGRVIPRKGVPVLIRAMRLLHKRLPAQLIIAGHGKPL---- 227 + RR L VLFVGR+ KG +L+ A+ + K+ P +I+ K Sbjct: 179 IYAAIRRELGLEGRKVVLFVGRLSKVKGAHLLLEALPSIIKKHPEAVIVFVGSKWFGDNE 238 Query: 228 ---YIRQLKAMARRLGVRAVFIGKIAHEDIHDLYHAADVFVCPSQRHESFGLVNVEAMAS 284 Y+R L + A+FI + E I LY AD+FVCPSQ E V+ EAMA+ Sbjct: 239 VNSYVRYLYTLGAMYENNAMFIQFVKPEQIPQLYTMADLFVCPSQWQEPLARVHYEAMAA 298 Query: 285 GLPVIASNNGGIREIIVSGHNGYLVQRYREASPFAKALLQLGRDPQLTARIGLQGRRDAL 344 GLP+I SN GG E+I +G NGY+V+ + +A + +L +P + ++G GR+ Sbjct: 299 GLPIITSNRGGNPEVIENGKNGYIVKDFSNPEAYAALINKLFDEPSSSIQMGKYGRQKVE 358 Query: 345 QNFGWQHTAAALEELY 360 + F W+ AA L Y Sbjct: 359 REFNWEVVAAKLLRAY 374 >Q67RC8.1 Q67RC8_SYMTH Putative lipopolysaccharide N-acetylglucosaminyltransferase Length = 375 Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 119/369 (32%), Positives = 174/369 (47%), Gaps = 13/369 (3%) Query: 1 MHICMIAPEQFPVPG--DGSVEICIWAVARKLARRHKVTIVSRKAPGLPDTDEQEQVRIV 58 M I ++ E+ PVP G+++ I V LA RH VT+V R P LP +E R V Sbjct: 1 MRIALVCTEKLPVPPVRGGAIQTYIDGVLPYLAARHDVTVVGRADPALPPAEEAGGARFV 60 Query: 59 RLVSGT-PARYLASVLDYLETEHFDVIQVDNRPLLMSSIKRRHPYTPVVLFLHSLTFVPA 117 R+ + P Y V +L E +D ++V NRP + I R P ++L LH+ P Sbjct: 61 RVAADDGPEAYADRVAAFLAAERWDAVEVFNRPAFVERIARAAPGARLILSLHNAMLAPD 120 Query: 118 E---SRIARSLARANLIAVNSRSLQRKLARRFPGLGGIIRVVPLGADLSRFSPAELPEKQ 174 +R R L + + S ++R R +P R + G DL RF P P Sbjct: 121 RIDPARARRILGMVDRVVTISDFIRRTAVRIYPEFAAKFRTIYSGVDLDRFRPGPCPAAA 180 Query: 175 QMRRLYRLSPVFTVLFVGRVIPRKGVPVLIRAMRLLHKRLPAQLIIA------GHGKPL- 227 +R + VL V R+ P+KGV +L+ AM + + P +++ G P Sbjct: 181 ALRAALGIGGRTVVLSVSRLSPKKGVHLLLEAMAHVARTHPGAVLVQVGSRWYGRNDPDD 240 Query: 228 YIRQLKAMARRLGVRAVFIGKIAHEDIHDLYHAADVFVCPSQRHESFGLVNVEAMASGLP 287 Y+R L A LG G + + ++ + ADVFVC SQ E V+ EAMA GLP Sbjct: 241 YVRDLARRAAELGDAVRMAGYVPYGEVDGYFRMADVFVCASQWEEPLARVHYEAMACGLP 300 Query: 288 VIASNNGGIREIIVSGHNGYLVQRYREASPFAKALLQLGRDPQLTARIGLQGRRDALQNF 347 ++ ++ GG E++ G G +V+ + FA A+ L DP L R+G + RR A F Sbjct: 301 IVTTDRGGNAEVVAEGRGGLIVRPHDRPEAFAAAIRTLLDDPALRRRMGAENRRLAEARF 360 Query: 348 GWQHTAAAL 356 GW AA L Sbjct: 361 GWDRVAAEL 369 >B3K9Y1.1 B3K9Y1_9BACI Glycosyl transferase group 1 Length = 381 Score = 177 bits (450), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 137/374 (36%), Positives = 179/374 (47%), Gaps = 19/374 (5%) Query: 3 ICMIAPEQFPVPG--DGSVEICIWAVARKLARRHKVTIVSRKAPGLPDTDEQEQVRIVRL 60 + ++ P F +P SVE + V I GLP D V RL Sbjct: 6 VAVVTPGSFVIPSGRSSSVERVVEQTIPLAQGAMDVRIFGVLGKGLPSKDTINGVPCYRL 65 Query: 61 VSGTPARYLASVLDYLETEHFDVIQVDNRPLLMSSIKRRHPYTPVVLFLHSLTFVP---- 116 SGT Y S+L L+ D+I+V NRPLL +K P +VL LHS TF+ Sbjct: 66 PSGT--NYYPSLLRRLQKWRPDIIEVHNRPLLAQRLKMHLPDVKIVLNLHSNTFISPPYM 123 Query: 117 AESRIARSLARANLIAVNSRSLQRKLARRFPGLGGIIRVVPLGADLSRFSPAELPEKQQM 176 +E R + I VNSR L + R GL I + LG L F+PA P + + Sbjct: 124 SEQRFGTIARWMDGIVVNSRFLLEDITSRHAGLLEKITINHLGVSLDHFTPAFSPAAKAL 183 Query: 177 RRL----YRLSPVFTVLFVGRVIPRKGVPVLIRAMRLLHKRLPAQLII----AGHG---K 225 R Y S +LF GR+IP KGV LI A+ + + P L++ A +G + Sbjct: 184 REAKLAHYGWSGRRIILFAGRLIPDKGVHHLIAALPHIIDKHPDVLLLIIGSAAYGSDRE 243 Query: 226 PLYIRQLKAMARRLGVRAVFIGKIAHEDIHDLYHAADVFVCPSQRHESFGLVNVEAMASG 285 Y+R+LK A F I + I D Y AD+ V PS E+FGLVNVEAMA+G Sbjct: 244 TAYVRELKRTAGPYTQWVFFRPFIPYPAIADWYSLADIVVVPSAPREAFGLVNVEAMAAG 303 Query: 286 LPVIASNNGGIREIIVSGHNGYLVQRYREASPFAKALLQLGRDPQLTARIGLQGRRDALQ 345 +PVIA+N GGI EI+ +G GYLVQR A+ + L +D L RIG+ GR Q Sbjct: 304 VPVIAANAGGIPEIVENGVTGYLVQRDDFPGGLAERINGLLQDENLRTRIGMAGRETVRQ 363 Query: 346 NFGWQHTAAALEEL 359 F W HTA L Sbjct: 364 RFRWDHTAERWANL 377 >Q67RC9.1 Q67RC9_SYMTH Putative lipopolysaccharide N-acetylglucosaminyltransferase Length = 381 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 122/380 (32%), Positives = 199/380 (52%), Gaps = 22/380 (5%) Query: 1 MHICMIAPEQFPVPG--DGSVEICIWAVARKLARRHKVTIVSRKAPGLPDTDEQEQVRIV 58 M MI E+ PVP G+++ I AVA +L R H+VT++ P LPD + ++ V Sbjct: 1 MRSLMICTEKLPVPPVRGGAIQTYIHAVAPRLGRHHRVTVLGVADPELPDREIRDGVEYW 60 Query: 59 RLVSGTPARYLASVLDYLE--TEHFDVIQVDNRPLLMSSIKRRHPYTPVVLFLHSLTFVP 116 R+ +GT +Y V++ L FDV+ + NRP L+ ++ P + ++L LH+ F P Sbjct: 61 RVPAGTFPQYRDRVVNLLRRAGRKFDVVHLFNRPRLVLPVREALPESRLILSLHNEMFRP 120 Query: 117 AESRIARSLARANLIAVN-----SRSLQRKLARRFPGLGGIIRVVPLGADLSRFSPAELP 171 +I ARA + A S + R + +P G + G DL RF P P Sbjct: 121 --EKIGPEEARAAIAATERIVTVSNFIGRGVEALYPEARGKWSTIYSGVDLDRFLPIWTP 178 Query: 172 E----KQQMRRLYRLSPVFTVLFVGRVIPRKGVPVLIRAMRLLHKRLP-AQLIIAG---H 223 E +Q++R + L +L+VGR+ P+KG V+ RA+ + +R P A L++ G + Sbjct: 179 EARRIRQRLRAEHGLGRGPILLYVGRLSPKKGADVVARALGPVARRYPEATLVLVGSKWY 238 Query: 224 GKPL---YIRQLKAMARRLGVRAVFIGKIAHEDIHDLYHAADVFVCPSQRHESFGLVNVE 280 G+ Y+ ++A+A R ++ + G + + +H+ + A D+F+C SQ E V+ E Sbjct: 239 GEDRISDYVAYVRALAARAPMKVLATGYVPADRVHEWFAAGDLFICASQWEEPLARVHYE 298 Query: 281 AMASGLPVIASNNGGIREIIVSGHNGYLVQRYREASPFAKALLQLGRDPQLTARIGLQGR 340 AMA+GLP+I + GG E++ NG +V+ FA+A+L+L D L R+ +GR Sbjct: 299 AMAAGLPIITTARGGNPEVVRGQGNGLVVEEAGSPEIFARAILRLLGDADLRTRMSRRGR 358 Query: 341 RDALQNFGWQHTAAALEELY 360 A +FGW AA + L+ Sbjct: 359 ALAEAHFGWDRVAAEIRALW 378 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,127,119,824 Number of extensions: 87318767 Number of successful extensions: 298282 Number of sequences better than 1.0e-05: 6086 Number of HSP's gapped: 296101 Number of HSP's successfully gapped: 6092 Length of query: 366 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 229 Effective length of database: 1,770,017,148 Effective search space: 405333926892 Effective search space used: 405333926892 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)