BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0564.0082.p
         (106 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9E2F2.1 B9E2F2_CLOK1 Putative uncharacterized protein                144   2e-33
A5N914.1 A5N914_CLOK5 Nitrogen regulatory protein P-1                 144   2e-33
Q3Z7C8.1 Q3Z7C8_DEHE1 Nitrogen regulatory protein P-II                144   3e-33
Q9KHA5.1 Q9KHA5_CLOBE GlnB-like protein I                             142   1e-32
A6LUZ0.1 A6LUZ0_CLOB8 Nitrogen regulatory protein P-II                140   4e-32

>B9E2F2.1 B9E2F2_CLOK1 Putative uncharacterized protein
          Length = 108

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 89/106 (83%)

Query: 1   MIKAIVRPEKADAVMAELLLAGFPSISKMDLLGRGKQKGIQVGTNHYNQISKKLLMIVIN 60
           MIKAI+RPEK ++V++ L  AGFP+++K D++GRGKQ+G+QVG+ HY++I K++LMIVIN
Sbjct: 3   MIKAIIRPEKVESVLSALSNAGFPAVTKYDVVGRGKQQGLQVGSIHYDEIPKEMLMIVIN 62

Query: 61  DDEKEDVISIIMRTARTGEQGSFGDGKIFVLPVQEAYTISNGKSQL 106
           D +K++VI  I+RTA+TGE+G+FGDGKIF  PV E YTIS G  +L
Sbjct: 63  DTDKDEVIDTIIRTAKTGEEGAFGDGKIFTAPVDEVYTISTGSKEL 108


>A5N914.1 A5N914_CLOK5 Nitrogen regulatory protein P-1
          Length = 108

 Score =  144 bits (364), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 89/106 (83%)

Query: 1   MIKAIVRPEKADAVMAELLLAGFPSISKMDLLGRGKQKGIQVGTNHYNQISKKLLMIVIN 60
           MIKAI+RPEK ++V++ L  AGFP+++K D++GRGKQ+G+QVG+ HY++I K++LMIVIN
Sbjct: 3   MIKAIIRPEKVESVLSALSNAGFPAVTKYDVVGRGKQQGLQVGSIHYDEIPKEMLMIVIN 62

Query: 61  DDEKEDVISIIMRTARTGEQGSFGDGKIFVLPVQEAYTISNGKSQL 106
           D +K++VI  I+RTA+TGE+G+FGDGKIF  PV E YTIS G  +L
Sbjct: 63  DTDKDEVIDTIIRTAKTGEEGAFGDGKIFTAPVDEVYTISTGSKEL 108


>Q3Z7C8.1 Q3Z7C8_DEHE1 Nitrogen regulatory protein P-II
          Length = 108

 Score =  144 bits (363), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 88/106 (83%)

Query: 1   MIKAIVRPEKADAVMAELLLAGFPSISKMDLLGRGKQKGIQVGTNHYNQISKKLLMIVIN 60
           M++AIVRPEK D VMAEL+ AGFP+++K+D+ GRGKQ+GI+ G+  Y+++ K LL+ VI+
Sbjct: 3   MVRAIVRPEKVDDVMAELMYAGFPAVTKIDVFGRGKQRGIRAGSVSYDELPKVLLLTVID 62

Query: 61  DDEKEDVISIIMRTARTGEQGSFGDGKIFVLPVQEAYTISNGKSQL 106
           D +KE VI  IM+TARTGE+G+FGDGKIF+ PV+EAYTIS G + L
Sbjct: 63  DKDKEFVIDTIMKTARTGEKGNFGDGKIFISPVEEAYTISTGSAVL 108


>Q9KHA5.1 Q9KHA5_CLOBE GlnB-like protein I
          Length = 108

 Score =  142 bits (357), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 89/106 (83%)

Query: 1   MIKAIVRPEKADAVMAELLLAGFPSISKMDLLGRGKQKGIQVGTNHYNQISKKLLMIVIN 60
           MI+AI+RPE+   V++ELL AGFP ++KM + GRGKQKGI+VG  +Y+++ K++L+I + 
Sbjct: 3   MIRAIIRPERVSTVLSELLDAGFPEVTKMAVYGRGKQKGIKVGEIYYDELPKEMLLIAVK 62

Query: 61  DDEKEDVISIIMRTARTGEQGSFGDGKIFVLPVQEAYTISNGKSQL 106
           D++K+DVI +IMR +RTGE+G+FGDGKIFV P++E YT+S+GKS L
Sbjct: 63  DEDKDDVIKVIMRNSRTGEKGAFGDGKIFVAPIEEVYTVSSGKSGL 108


>A6LUZ0.1 A6LUZ0_CLOB8 Nitrogen regulatory protein P-II
          Length = 108

 Score =  140 bits (353), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 89/106 (83%)

Query: 1   MIKAIVRPEKADAVMAELLLAGFPSISKMDLLGRGKQKGIQVGTNHYNQISKKLLMIVIN 60
           MI+AI+RPE+   V++ELL AGFP ++KM + GRGKQKGI+VG  +Y+++ K++L+I + 
Sbjct: 3   MIRAIIRPERVSTVLSELLDAGFPEVTKMAVYGRGKQKGIKVGEVYYDELPKEMLLIAVK 62

Query: 61  DDEKEDVISIIMRTARTGEQGSFGDGKIFVLPVQEAYTISNGKSQL 106
           D++K+DVI +I+R +RTGE+G+FGDGKIFV P++E YT+S+GKS L
Sbjct: 63  DEDKDDVIKVIIRNSRTGEKGAFGDGKIFVAPIEEVYTVSSGKSGL 108


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.136    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 581,625,299
Number of extensions: 19905786
Number of successful extensions: 58119
Number of sequences better than 1.0e-05: 810
Number of HSP's gapped: 58370
Number of HSP's successfully gapped: 810
Length of query: 106
Length of database: 3,060,696,203
Length adjustment: 74
Effective length of query: 32
Effective length of database: 2,363,541,093
Effective search space: 75633314976
Effective search space used: 75633314976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)