BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0079.p (290 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5D2V8.1 C5D2V8_9BACI Cof-like hydrolase 307 6e-82 C3J2A3.1 C3J2A3_9BACI Cof-like hydrolase 283 1e-74 B7YC79.1 B7YC79_9BACI Cof-like hydrolase 283 1e-74 A4IPS3.1 A4IPS3_GEOTN Putative uncharacterized protein 282 3e-74 B4BNS8.1 B4BNS8_9BACI Cof-like hydrolase 282 3e-74 >C5D2V8.1 C5D2V8_9BACI Cof-like hydrolase Length = 281 Score = 307 bits (787), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 156/286 (54%), Positives = 197/286 (68%), Gaps = 5/286 (1%) Query: 1 MLIALDMDGTLLNEEGKISPENREAIVHAQSLGHIVIIATGRSYMDAERQLRLVDLECPV 60 MLIALDMDGTLLN G++S N+EAIV AQ GHIV I TGR+Y DA LR L CP+ Sbjct: 1 MLIALDMDGTLLNSNGQVSRRNKEAIVTAQKQGHIVAIVTGRAYKDARAPLRDAGLVCPI 60 Query: 61 VSLNGAVVTLPDRTLAASKPLNKEDIIPALRWMSGIPELYYEVYTEDNVYVELDKRVRLE 120 +SLNGAV+TL D T+ PL+KE +IPAL W+ P+LY E+YT D VYV L R LE Sbjct: 61 MSLNGAVMTLEDGTVLGDVPLDKEKLIPALEWVRAQPDLYCEIYTGDAVYVGLHNRAHLE 120 Query: 121 KLSELNDEAVPGELRWLLKAMIAKQFQQASVTYVESMEEIWSKDEYVIFKTLAFSLNREL 180 ++E + P LK ++ KQFQQA VTYV+ + IW + + V +K L FSL++E Sbjct: 121 AMAEKASDIAPE-----LKRIVEKQFQQARVTYVDDIRAIWEERQTVFYKVLIFSLDQER 175 Query: 181 LKEASTRFAAIPGLIITASHVNNIEINHKDANKGSGVGMLAAHYGIPAEQVAVMGDSYND 240 L+EA+ +FAAI G+ +T+SH NNIEINH+ A KG + LAAHYGI + V GDS+ND Sbjct: 176 LQEAAAQFAAISGITVTSSHPNNIEINHEQATKGEALVKLAAHYGIDMKDTVVFGDSHND 235 Query: 241 LPMFEMAGYRIAMENAAPILKETADFVTGNHAENGVAEGLRHLLEK 286 L MF +AGYR+AMENAAP LKE +D VT +H E+GVA L L+ K Sbjct: 236 LSMFAVAGYRVAMENAAPGLKEVSDMVTASHEEDGVAVVLEELIGK 281 >C3J2A3.1 C3J2A3_9BACI Cof-like hydrolase Length = 282 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 144/287 (50%), Positives = 191/287 (66%), Gaps = 5/287 (1%) Query: 1 MLIALDMDGTLLNEEGKISPENREAIVHAQSLGHIVIIATGRSYMDAERQLRLVDLECPV 60 MLIALDMDGTLLN EGKIS NR+A++ AQ GHIV + TGR+ DA LR L CP+ Sbjct: 1 MLIALDMDGTLLNGEGKISERNRKAMMAAQKEGHIVAVITGRARKDALAPLREAGLVCPI 60 Query: 61 VSLNGAVVTLPDRTLAASKPLNKEDIIPALRWMSGIPELYYEVYTEDNVYVELDKRVRLE 120 SLNGA+VTL D T+ PL + + P L W+ +LY E YT D VYV L R + E Sbjct: 61 ASLNGAIVTLEDGTVIGEAPLARTAVRPTLEWVRKQSDLYCETYTGDAVYVGLHNRAQWE 120 Query: 121 KLSELNDEAVPGELRWLLKAMIAKQFQQASVTYVESMEEIWSKDEYVIFKTLAFSLNREL 180 L+ +A P +++WL+ KQFQQA VTYV+ + +W + ++K L F+L+RE Sbjct: 121 SLASEMADAAP-DVKWLVN----KQFQQARVTYVDDIRTVWDDPQLTLYKLLIFALDRER 175 Query: 181 LKEASTRFAAIPGLIITASHVNNIEINHKDANKGSGVGMLAAHYGIPAEQVAVMGDSYND 240 L++A++RFAA+PG+ +T+SH +NIE+N++ A KG + LAAHYGI GDS+ND Sbjct: 176 LRDAASRFAALPGVTVTSSHPHNIEMNNERATKGEALKQLAAHYGIDLCDTVAFGDSHND 235 Query: 241 LPMFEMAGYRIAMENAAPILKETADFVTGNHAENGVAEGLRHLLEKR 287 L MFE+AG R+AM NAAP LK AD VT +H E+GVA GL +L +R Sbjct: 236 LSMFEVAGCRVAMANAAPELKAKADIVTCSHEEDGVAAGLERVLRQR 282 >B7YC79.1 B7YC79_9BACI Cof-like hydrolase Length = 282 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 144/287 (50%), Positives = 191/287 (66%), Gaps = 5/287 (1%) Query: 1 MLIALDMDGTLLNEEGKISPENREAIVHAQSLGHIVIIATGRSYMDAERQLRLVDLECPV 60 MLIALDMDGTLLN EGKIS NR+A++ AQ GHIV + TGR+ DA LR L CP+ Sbjct: 1 MLIALDMDGTLLNGEGKISERNRKAMMAAQKEGHIVAVITGRARKDALAPLREAGLVCPI 60 Query: 61 VSLNGAVVTLPDRTLAASKPLNKEDIIPALRWMSGIPELYYEVYTEDNVYVELDKRVRLE 120 SLNGA+VTL D T+ PL + + P L W+ +LY E YT D VYV L R + E Sbjct: 61 ASLNGAIVTLEDGTVIGEAPLARTAVRPTLEWVRKQSDLYCETYTGDAVYVGLHNRAQWE 120 Query: 121 KLSELNDEAVPGELRWLLKAMIAKQFQQASVTYVESMEEIWSKDEYVIFKTLAFSLNREL 180 L+ +A P +++WL+ KQFQQA VTYV+ + +W + ++K L F+L+RE Sbjct: 121 SLASEMADAAP-DVKWLVN----KQFQQARVTYVDDIRTVWDDPQLTLYKLLIFALDRER 175 Query: 181 LKEASTRFAAIPGLIITASHVNNIEINHKDANKGSGVGMLAAHYGIPAEQVAVMGDSYND 240 L++A++RFAA+PG+ +T+SH +NIE+N++ A KG + LAAHYGI GDS+ND Sbjct: 176 LRDAASRFAALPGVTVTSSHPHNIEMNNERATKGEALKQLAAHYGIDLCDTVAFGDSHND 235 Query: 241 LPMFEMAGYRIAMENAAPILKETADFVTGNHAENGVAEGLRHLLEKR 287 L MFE+AG R+AM NAAP LK AD VT +H E+GVA GL +L +R Sbjct: 236 LSMFEVAGCRVAMANAAPELKAKADIVTCSHEEDGVAAGLERVLRQR 282 >A4IPS3.1 A4IPS3_GEOTN Putative uncharacterized protein Length = 282 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/287 (50%), Positives = 192/287 (66%), Gaps = 5/287 (1%) Query: 1 MLIALDMDGTLLNEEGKISPENREAIVHAQSLGHIVIIATGRSYMDAERQLRLVDLECPV 60 MLIALDMDGTLLN EGKIS +NR+AI+ AQ+ GH+V + TGR+ DA LR L CP+ Sbjct: 1 MLIALDMDGTLLNGEGKISEQNRKAIMAAQAQGHLVAVVTGRARKDALAPLREAGLVCPI 60 Query: 61 VSLNGAVVTLPDRTLAASKPLNKEDIIPALRWMSGIPELYYEVYTEDNVYVELDKRVRLE 120 SLNGA+VTL D T+ + PL + I AL W+ +LY E Y D VYV L R + E Sbjct: 61 ASLNGAIVTLEDGTVISQAPLERTVIRHALDWVREQSDLYCETYVGDEVYVGLHNRAQWE 120 Query: 121 KLSELNDEAVPGELRWLLKAMIAKQFQQASVTYVESMEEIWSKDEYVIFKTLAFSLNREL 180 L+ E P E++W+ + KQFQQA VTYV+ + +W + VI+K L FSL+RE Sbjct: 121 ALALEKTEVAP-EVKWI----VMKQFQQARVTYVDDIRTVWDDPKRVIYKLLIFSLDRER 175 Query: 181 LKEASTRFAAIPGLIITASHVNNIEINHKDANKGSGVGMLAAHYGIPAEQVAVMGDSYND 240 L++A++ F +PG+ +T+SH +NIE+N++ A KG + LA+HYGI V GDS+ND Sbjct: 176 LRDAASHFDPLPGVTVTSSHPHNIEVNNERATKGEALKQLASHYGIDLRDTVVFGDSHND 235 Query: 241 LPMFEMAGYRIAMENAAPILKETADFVTGNHAENGVAEGLRHLLEKR 287 L MFE+AG R+AM NAAP LK T DFVT +H E+GVA GL +L +R Sbjct: 236 LSMFEVAGCRVAMANAAPELKSTCDFVTLSHEEDGVAAGLEQVLVRR 282 >B4BNS8.1 B4BNS8_9BACI Cof-like hydrolase Length = 282 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/287 (50%), Positives = 192/287 (66%), Gaps = 5/287 (1%) Query: 1 MLIALDMDGTLLNEEGKISPENREAIVHAQSLGHIVIIATGRSYMDAERQLRLVDLECPV 60 MLIALDMDGTLLN EGKIS +NR+AI+ AQ+ GH+V + TGR+ DA LR L CP+ Sbjct: 1 MLIALDMDGTLLNGEGKISEQNRKAIMAAQAQGHLVAVVTGRARKDALAPLREAGLVCPI 60 Query: 61 VSLNGAVVTLPDRTLAASKPLNKEDIIPALRWMSGIPELYYEVYTEDNVYVELDKRVRLE 120 SLNGA+VTL D T+ + PL + I AL W+ +LY E Y D VYV L R + E Sbjct: 61 ASLNGAIVTLEDGTVISQAPLERTVIRHALDWVREQSDLYCETYVGDEVYVGLHNRAQWE 120 Query: 121 KLSELNDEAVPGELRWLLKAMIAKQFQQASVTYVESMEEIWSKDEYVIFKTLAFSLNREL 180 L+ E P E++W+ + KQFQQA VTYV+ + +W + VI+K L FSL+RE Sbjct: 121 ALALEKTEVAP-EVKWI----VMKQFQQARVTYVDDIRTVWDDPKRVIYKLLIFSLDRER 175 Query: 181 LKEASTRFAAIPGLIITASHVNNIEINHKDANKGSGVGMLAAHYGIPAEQVAVMGDSYND 240 L++A++ F +PG+ +T+SH +NIE+N++ A KG + LA+HYGI V GDS+ND Sbjct: 176 LRDAASHFDPLPGVTVTSSHPHNIEVNNERATKGEALKQLASHYGIDLRDTVVFGDSHND 235 Query: 241 LPMFEMAGYRIAMENAAPILKETADFVTGNHAENGVAEGLRHLLEKR 287 L MFE+AG R+AM NAAP LK T DFVT +H E+GVA GL +L +R Sbjct: 236 LSMFEVAGCRVAMANAAPELKSTCDFVTLSHEEDGVAAGLEQVLVRR 282 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,692,060,314 Number of extensions: 69573439 Number of successful extensions: 201769 Number of sequences better than 1.0e-05: 2738 Number of HSP's gapped: 200477 Number of HSP's successfully gapped: 2909 Length of query: 290 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 156 Effective length of database: 1,798,280,193 Effective search space: 280531710108 Effective search space used: 280531710108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)