BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0077.p (322 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein 271 5e-71 B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein 241 6e-62 B3KIV0.1 B3KIV0_9BACI Helix-turn-helix domain protein 216 3e-54 A9U7T8.1 A9U7T8_PHYPA Predicted protein (Fragment) 191 9e-47 C0Z8G0.1 C0Z8G0_BREBN Putative DNA-binding protein 177 8e-43 >B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein Length = 467 Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 140/320 (43%), Positives = 195/320 (60%), Gaps = 5/320 (1%) Query: 2 AEMEEYIRREGLSISQFAERSGIHSGTLSNMLHGRRPIAMQQLDRVTRAMGLAEGYYYDL 61 E+ Y+++E LSIS FA +S I+SGTLS + G++P+++ LD VT AM L EGY+Y Sbjct: 10 TELLRYLKKENLSISSFANKSRINSGTLSRFIKGQQPLSVSNLDLVTEAMNLEEGYFYSF 69 Query: 62 YIDNYIVDGSSDWRRVGPLLQRCAELGKLDSIRRVVRIVTDNLSYLPALFDRAEELYAKG 121 Y ++ S +WRR+GP + RCAEL KL + ++V ++ DNL+Y LFD AE LY KG Sbjct: 70 YAYECMIQSSPNWRRLGPFIMRCAELNKLKCLDQLVGMMMDNLTYSSLLFDTAEALYHKG 129 Query: 122 RSEAAALLYEGVAESEKYQHSERLALCQYRLFRIGLCEDQDENLRLANQFESYVERLDEA 181 EAA ++Y+ VAESEKYQH+ERL +CQYR+F L DQ+ NL QFE+YV+RL +A Sbjct: 130 NREAALIIYKKVAESEKYQHAERLGMCQYRIFTCSLNSDQEHNLDCTIQFENYVKRLPDA 189 Query: 182 DQLDALKHLADVFASLHNWSKVDELGDRLGRKSDAQYKYRKK----NKTQKQPDRPXXXX 237 QLDALK LA+ SL W+K +GR S Y + K + K+P +P Sbjct: 190 VQLDALKDLANTLLSLRKWNKAKYYIQEMGRISRVLYSQKHKQARPSSRLKRPAKPLFGY 249 Query: 238 XXXXXXXXXXXCDETGDHSRALHFVSLYSDTSWVELPASKEEERVMEQFKEWATANSYLY 297 E D+ +AL++VS Y D SWV+ + + E EQF+EWA N YLY Sbjct: 250 ILYSDLLLGSIAAENDDYDQALYYVSCYEDQSWVK-ESDEAAEITKEQFREWAKGNRYLY 308 Query: 298 RLTAGDIEIIPEYINYVESR 317 L G+ +++ YI+Y+ SR Sbjct: 309 ELMKGNTDVLEPYIDYLSSR 328 >B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein Length = 414 Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 126/280 (45%), Positives = 173/280 (61%), Gaps = 2/280 (0%) Query: 39 IAMQQLDRVTRAMGLAEGYYYDLYIDNYIVDGSSDWRRVGPLLQRCAELGKLDSIRRVVR 98 ++M QLDR+T MGL EG++Y+LYI I + DWRR+ P L+RCAEL KLD + R R Sbjct: 1 MSMHQLDRITEGMGLEEGHFYNLYITESIFHTTPDWRRLRPFLKRCAELDKLDCLHRTAR 60 Query: 99 IVTDNLSYLPALFDRAEELYAKGRSEAAALLYEGVAESEKYQHSERLALCQYRLFRIGLC 158 + +N++Y+P LF+ AEEL+ + + +AAALLYE VAE EK Q+SERLALCQYRLF I L Sbjct: 61 MTLENINYVPMLFEMAEELFIEEKYKAAALLYECVAECEKLQYSERLALCQYRLFLIRLG 120 Query: 159 EDQDENLRLANQFESYVERLDEADQLDALKHLADVFASLHNWSKVDELGDRLGRKSDAQY 218 E+Q+ENL+ A FE Y++RLDE QLDA L ++ SL K++ L R+ + Y Sbjct: 121 ENQEENLQAAVYFEPYIDRLDEMYQLDAYVKLINLNISLQRMDKIEALAKRMEHHARIHY 180 Query: 219 KY-RKKNKTQKQPDRPXXXXXXXXXXXXXXXCDETGDHSRALHFVSLYSDTSWVELPASK 277 + R + P +P E GD+ A ++VSLY W+ AS Sbjct: 181 QQNRSWFEGSGNPRKPLIFYILYSYLIQAYLYQERGDYDNAFYYVSLYEKPDWIT-NASN 239 Query: 278 EEERVMEQFKEWATANSYLYRLTAGDIEIIPEYINYVESR 317 EE +M QFKEWA AN Y++ L +G + +Y++YVESR Sbjct: 240 EESLIMNQFKEWAEANRYMFSLMSGQPGALHQYVDYVESR 279 >B3KIV0.1 B3KIV0_9BACI Helix-turn-helix domain protein Length = 181 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 97/164 (59%), Positives = 128/164 (78%) Query: 3 EMEEYIRREGLSISQFAERSGIHSGTLSNMLHGRRPIAMQQLDRVTRAMGLAEGYYYDLY 62 +MEE++ + ++I++FAE S ++SGTLSN+L+G RPI+MQQLDR+T MGL EGY+Y+LY Sbjct: 10 QMEEFLHKNEMTINRFAEISEVNSGTLSNILNGNRPISMQQLDRITSGMGLEEGYFYELY 69 Query: 63 IDNYIVDGSSDWRRVGPLLQRCAELGKLDSIRRVVRIVTDNLSYLPALFDRAEELYAKGR 122 ID I + DWRR+GP L RCAELGKLD + + VR+ DN+SY P LF+ AE + +G+ Sbjct: 70 IDECIFHATPDWRRLGPFLHRCAELGKLDCLDKAVRMTMDNISYSPLLFETAELFFKEGK 129 Query: 123 SEAAALLYEGVAESEKYQHSERLALCQYRLFRIGLCEDQDENLR 166 EAA LLY VAESE++QHSERLALCQYRLF +GL +DQ+ N R Sbjct: 130 HEAAVLLYRSVAESERFQHSERLALCQYRLFTLGLTDDQEMNSR 173 >A9U7T8.1 A9U7T8_PHYPA Predicted protein (Fragment) Length = 183 Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 97/183 (53%), Positives = 127/183 (69%), Gaps = 2/183 (1%) Query: 8 IRREGLSISQFAERSGIHSGTLSNMLHGRRPIAMQQLDRVTRAMGLAEGYYYDLYIDNYI 67 + + L +S FAE+SG++SGTLS ++ G RPI+ QL +T MGL E ++ Y+ I Sbjct: 1 MEKNKLKVSHFAEQSGLNSGTLSRIIQGLRPISFNQLIAITSGMGLPEDTFFSSYVS--I 58 Query: 68 VDGSSDWRRVGPLLQRCAELGKLDSIRRVVRIVTDNLSYLPALFDRAEELYAKGRSEAAA 127 RRVGP L RCAEL ++D I R+ DN+SY+ ALFD AEE Y +G+ +AA Sbjct: 59 CIKQPSLRRVGPFLLRCAELDRMDCIGRLASAYWDNISYVKALFDYAEEFYIQGKLKAAE 118 Query: 128 LLYEGVAESEKYQHSERLALCQYRLFRIGLCEDQDENLRLANQFESYVERLDEADQLDAL 187 ++YE V+E+EK QHSERLALCQYRLF I L E+ +ENL+LA QFE Y+ RLDE+ QLDAL Sbjct: 119 VIYEMVSEAEKMQHSERLALCQYRLFDIKLGENLEENLKLAVQFELYINRLDESYQLDAL 178 Query: 188 KHL 190 K L Sbjct: 179 KQL 181 >C0Z8G0.1 C0Z8G0_BREBN Putative DNA-binding protein Length = 443 Score = 177 bits (450), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 109/323 (33%), Positives = 173/323 (53%), Gaps = 9/323 (2%) Query: 2 AEMEEYIRREGLSISQFAERSGIHSGTLSNMLHGRRPIAMQ--QLDRVTRAMGLAEGYYY 59 +E+E+ R+ G ++S+ +E +GI+ G+LS +L+G P AM QLD + G +G+ Y Sbjct: 7 SEIEKCRRKHGYTLSKLSELTGINPGSLSEILNGNPPRAMTIGQLDAFAKVFGREQGWLY 66 Query: 60 DLYIDNYIVDGSSDWRRVGPLLQRCAELGKLDSIRRVVRIVTDNLSYLPALFDRAEELYA 119 +LY + + + R+ P L RC E+G+ D I VV I+ +N + LF AE+LY Sbjct: 67 ELYPEECLSEQRISRPRLIPYLARCVEVGRKDCIETVVSILLENPKNILILFALAEQLYE 126 Query: 120 KGRSEAAALLYEGVAESEKYQHSERLALCQYRLFRIGLCEDQDENLRLANQFESYVERLD 179 KG+ + + YE V E+EK +S+ + QYRLFR L + +EN +F Y RL Sbjct: 127 KGQLKESVPFYEYVIENEKDSYSDHFVMSQYRLFRAVLGTNAEENWENVIRFSPYRNRLP 186 Query: 180 EADQLDALKHLADVFASLHNWSKVDELGDRLGRKSDAQYKY------RKKNKTQKQPDRP 233 E QLDAL LA V +L W+K E GD L ++ + + R K +P+RP Sbjct: 187 ENYQLDALFQLARVCFALQKWNKSGEYGDELRLLAETVHMHELDRLKRNKKGEPLKPERP 246 Query: 234 XXXXXXXXXXXXXXXCDETGDHSRALHFVSLYSDTSWVELPASKEEERVMEQFKEWATAN 293 + G + A +V +Y+D W EL ++ + +E+FK WA AN Sbjct: 247 LVYYYGMGHLYKGAALEMQGLYEEAKQYVRVYADLGWFEL-LDEDGRKEVERFKVWAKAN 305 Query: 294 SYLYRLTAGDIEIIPEYINYVES 316 SY + +G+ +++ EY++Y+ES Sbjct: 306 SYTLEVLSGNTDVLEEYVDYLES 328 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,787,705,948 Number of extensions: 69190499 Number of successful extensions: 199477 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 199456 Number of HSP's successfully gapped: 11 Length of query: 322 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 186 Effective length of database: 1,779,438,163 Effective search space: 330975498318 Effective search space used: 330975498318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)