BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0076.p (149 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2X0P4.1 C2X0P4_BACCE Putative uncharacterized protein 147 2e-34 C2XW70.1 C2XW70_BACCE Putative uncharacterized protein 147 3e-34 C3ID60.1 C3ID60_BACTU Putative uncharacterized protein 142 1e-32 C2WQ19.1 C2WQ19_BACCE Putative uncharacterized protein 142 1e-32 C3AEU6.1 C3AEU6_BACMY Putative uncharacterized protein 138 1e-31 >C2X0P4.1 C2X0P4_BACCE Putative uncharacterized protein Length = 160 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 68/145 (46%), Positives = 102/145 (70%) Query: 5 IAQLYHNRLLRTELECEAFDLALEGLAGDMEDAVIRQIFYVFDDDTEQEEVMFGLVHFVE 64 + +LY R L+ + ECE FD LE LA ++ +I+++ VF+D+T+ EEVMFGLVH +E Sbjct: 7 VKRLYSCRFLKNQSECEEFDSVLENLADCTDEKLIKELCIVFEDETQAEEVMFGLVHCIE 66 Query: 65 SYQMEMYLTQLLESLPDMLENARNWAIVLNRRILEDDLCRREYADIAAGMTPRIKRSLAF 124 S++ME YLT++ ++LP M+E+A+ WA++LN+RIL DLCR EYA + G+ I+ ++ Sbjct: 67 SFEMEKYLTEMPKALPKMVESAKEWAMLLNKRILNSDLCRSEYAKVLVGINHDIQLTVIN 126 Query: 125 LLEEIKEDNPRLYERKVNAVLGQLE 149 LL EI DNP+ +E N VL QL+ Sbjct: 127 LLNEIIADNPKKFESTANEVLSQLQ 151 >C2XW70.1 C2XW70_BACCE Putative uncharacterized protein Length = 157 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/145 (48%), Positives = 102/145 (70%) Query: 5 IAQLYHNRLLRTELECEAFDLALEGLAGDMEDAVIRQIFYVFDDDTEQEEVMFGLVHFVE 64 + +LY R L+ + ECE FD LE LA ++ +I+++ VF+D+T+ EEVMFGLVHF+E Sbjct: 7 VKRLYSCRFLKNQSECEEFDNILENLADCTDEKLIKELCIVFEDETQAEEVMFGLVHFIE 66 Query: 65 SYQMEMYLTQLLESLPDMLENARNWAIVLNRRILEDDLCRREYADIAAGMTPRIKRSLAF 124 S++ME YLT++ ++LP M+E+A+ WAI+LN RIL DLCR EYA + GM I+ ++ Sbjct: 67 SFEMEKYLTEMPKALPKMVESAKEWAILLNIRILNSDLCRSEYAKVLVGMNHDIQLTVID 126 Query: 125 LLEEIKEDNPRLYERKVNAVLGQLE 149 LL EI D+P+ +E N VL QL+ Sbjct: 127 LLNEIIADDPKRFESTANEVLSQLQ 151 >C3ID60.1 C3ID60_BACTU Putative uncharacterized protein Length = 159 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/145 (48%), Positives = 101/145 (69%) Query: 5 IAQLYHNRLLRTELECEAFDLALEGLAGDMEDAVIRQIFYVFDDDTEQEEVMFGLVHFVE 64 + +LY R L+ + ECE FD ALE LA +I+++ VF+D+T+ EEVMFGLVHF+E Sbjct: 9 VKRLYSCRFLKNQSECEEFDNALENLADCTVKELIQELCIVFEDETQAEEVMFGLVHFIE 68 Query: 65 SYQMEMYLTQLLESLPDMLENARNWAIVLNRRILEDDLCRREYADIAAGMTPRIKRSLAF 124 S++ME YLT++ ++LP M+E+A+ WA++LN+RIL DDL R EYA + GM I+ + Sbjct: 69 SFEMEKYLTEMPKALPKMVESAKEWAMLLNKRILNDDLYRSEYAKVLVGMNYDIQLKVID 128 Query: 125 LLEEIKEDNPRLYERKVNAVLGQLE 149 LL EI +NP+ +E N VL QL+ Sbjct: 129 LLNEIITNNPKRFEITANEVLSQLQ 153 >C2WQ19.1 C2WQ19_BACCE Putative uncharacterized protein Length = 159 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/145 (48%), Positives = 101/145 (69%) Query: 5 IAQLYHNRLLRTELECEAFDLALEGLAGDMEDAVIRQIFYVFDDDTEQEEVMFGLVHFVE 64 + +LY R L+ + ECE FD ALE LA +I+++ VF+D+T+ EEVMFGLVHF+E Sbjct: 9 VKRLYSCRFLKNQSECEEFDNALENLADCTVKELIQELCIVFEDETQAEEVMFGLVHFIE 68 Query: 65 SYQMEMYLTQLLESLPDMLENARNWAIVLNRRILEDDLCRREYADIAAGMTPRIKRSLAF 124 S++ME YLT++ ++LP M+E+A+ WA++LN+RIL DDL R EYA + GM I+ + Sbjct: 69 SFEMEKYLTEMPKALPKMVESAKEWAMLLNKRILNDDLYRSEYAKVLVGMNYDIQLKVID 128 Query: 125 LLEEIKEDNPRLYERKVNAVLGQLE 149 LL EI +NP+ +E N VL QL+ Sbjct: 129 LLNEIITNNPKRFEITANEVLSQLQ 153 >C3AEU6.1 C3AEU6_BACMY Putative uncharacterized protein Length = 159 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 68/145 (46%), Positives = 101/145 (69%) Query: 5 IAQLYHNRLLRTELECEAFDLALEGLAGDMEDAVIRQIFYVFDDDTEQEEVMFGLVHFVE 64 + +LY R L+ + ECE FD ALE LA + +I+++ VF+D+T++EEVMFGLVHF+E Sbjct: 9 VKRLYSCRFLKNQSECEEFDNALENLADCTDKELIQELCIVFEDETQEEEVMFGLVHFIE 68 Query: 65 SYQMEMYLTQLLESLPDMLENARNWAIVLNRRILEDDLCRREYADIAAGMTPRIKRSLAF 124 S++M YLT++ ++L M+E+A+ WA++LN+RIL DDL R EYA + GM I+ + Sbjct: 69 SFEMGKYLTEMPKALSKMVESAKEWAMLLNKRILNDDLYRSEYAKVLVGMNYDIQLKVID 128 Query: 125 LLEEIKEDNPRLYERKVNAVLGQLE 149 LL EI +NP+ +E N VL QL+ Sbjct: 129 LLNEIITNNPKRFEITANEVLSQLQ 153 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.140 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 843,444,749 Number of extensions: 30904971 Number of successful extensions: 72760 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 72742 Number of HSP's successfully gapped: 39 Length of query: 149 Length of database: 3,060,696,203 Length adjustment: 111 Effective length of query: 38 Effective length of database: 2,014,963,538 Effective search space: 76568614444 Effective search space used: 76568614444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)