BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0564.0074.p (775 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4D6.1 B3K4D6_9BACI UvrD/REP helicase 728 0.0 B1DJK1.1 B1DJK1_9BACL UvrD/REP helicase 711 0.0 A6CLK8.1 A6CLK8_9BACI ATP-dependent DNA helicase, UvrD/REP famil... 691 0.0 A7GMB7.1 A7GMB7_BACCN UvrD/REP helicase 561 e-158 C2UN36.1 C2UN36_BACCE ATP-dependent DNA helicase, UvrD/REP 561 e-157 >B3K4D6.1 B3K4D6_9BACI UvrD/REP helicase Length = 822 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/690 (52%), Positives = 490/690 (71%), Gaps = 11/690 (1%) Query: 1 MNKLLFHNIPLGATGERIPQAKVASARTSREMVKPGDSDAAYFRRLEEGGILLNSPQIAA 60 M + F+ P G + IP AK+AS SR++++ DAA+FR LE G+LLN QI A Sbjct: 1 MTSIPFYKRPYGGERQDIPFAKLASFENSRDLIRDDAPDAAFFRGLESQGLLLNRAQIQA 60 Query: 61 VRHHQGPLLTLAGAGSGKTSVLICRTGYLLSVRGISPSQLLLLTFSNKAAAEMRERIALL 120 VRH QGPLLTLAGAGSGKTSVL+ RTGYL++ + + PS +LL+TFS+KAAAEM+ERI L Sbjct: 61 VRHTQGPLLTLAGAGSGKTSVLVSRTGYLIAAKSVEPSSILLVTFSSKAAAEMKERIMAL 120 Query: 121 PGVRESDAARLQARTFHSFFLYFLRRQGLQQEIFNETRRQHILLKQIMRELGLPKDAYPP 180 PG+R S+ A++ ARTFHSFFLY LR +G +QEI + R Q ++K+I+RE+GL +D+Y Sbjct: 121 PGLRSSETAKVTARTFHSFFLYLLRTRGYKQEILSNARHQQFIMKRILREMGL-QDSYEA 179 Query: 181 ETLLALLSTCKMNLGEPEKLPETSPAEKEMKAVLLLYEQWKTDNFKIDFDDVLLIAYRML 240 ETLL+L S +M++ ++LP +PAE E + + YE WK ++ ++DFDD+L+++YR+L Sbjct: 180 ETLLSLWSAHRMSMTGLDELPVKTPAEVEQRQIFARYEAWKEEHGQMDFDDILVLSYRLL 239 Query: 241 REKPALLLELQMRFLYVMVDEFQDTNALQYELVKMIAHPQHNLMVVGDDDQTIYSFNGAR 300 LL LQ R+ YVMVDEFQDT L YEL+K I P NLMVVGDDDQTIY FNGAR Sbjct: 240 SHDSGLLASLQSRYRYVMVDEFQDTGLLPYELLKKIVAPHRNLMVVGDDDQTIYGFNGAR 299 Query: 301 SEFILEFEKLYPGARVITLDINYRSGPAIVGLGNGIIRHNMRRRAKTLQAAQGSGRQPRY 360 +EFILEF++ +PGA+V+TLDINYRS +IVGLGN IIR N RRR K L++ + S P Y Sbjct: 300 NEFILEFDQTFPGAKVVTLDINYRSLSSIVGLGNEIIRVNERRRPKQLRSTRKSSSVPLY 359 Query: 361 LRPQTADEEAEQIVEHILSEVASGARAYSDFALLYRASSSNRALLERLLLRDVPYVDYGE 420 LRP D+EAE ++ HI +V + Y D A+LYR ++++RA+ E+L++R++P++ Y Sbjct: 360 LRPGDPDQEAELLLTHITEQVREHGKQYRDHAILYRTANNSRAIFEQLVMREIPFIHYEN 419 Query: 421 GQLLYEHWLISPVLDYLRLSLNRRNFAAMENILPTLYLNREKGMNHIRRMEAVQPKQGPL 480 G L YE W++ P++D+LRLSL+RRNF AME +L TLY+NR+KGM IR+ +A +PK+GPL Sbjct: 420 GDLFYEQWIVKPLMDHLRLSLDRRNFTAMEGMLHTLYINRDKGMAFIRQQDAPRPKKGPL 479 Query: 481 IHLLSLPGMEDFKSGKXXXXXXXXXXXXXXTPVQAIRQIRSGFYDYFIEANERHQATLHR 540 HLLS PG++DF+ P+QA++++R FYD F+EA+ER + TLH+ Sbjct: 480 SHLLSFPGLKDFQIENIRERSKLIKGLKAMEPLQAVQEMRRQFYDKFLEADERQEITLHK 539 Query: 541 EMLKEMLDELEASAERFDSLPGFLEFIGNVTERNELSRQPGLKEQGNRVALMTIHKSKGL 600 E ++E LDELEASA+RF + F+ F+ + ++ E + V LMTIHKSKGL Sbjct: 540 EFIQEGLDELEASAKRFGDIAEFVGFVDRLIIIHKEMAAMKRDEHADAVRLMTIHKSKGL 599 Query: 601 EFPVVFLIGASEGILPHSSALEGERLKDRKTSPPPGARDSKVIAGNTAGLAALEEERRLA 660 EFP V LIGASEGILPH+SAL+ ER D++ P ++ K L ALEEERRLA Sbjct: 600 EFPSVCLIGASEGILPHTSALDAERRDDQR---PLSDKEDK-------ALDALEEERRLA 649 Query: 661 YVAVTRAREELFISSPARHRGKKAEVSRFM 690 YVA+TRAR+EL ISSP +RG+KAEVSRF Sbjct: 650 YVAITRARDELVISSPGFYRGRKAEVSRFF 679 >B1DJK1.1 B1DJK1_9BACL UvrD/REP helicase Length = 692 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/692 (52%), Positives = 472/692 (68%), Gaps = 13/692 (1%) Query: 2 NKLLFHNIPLGATGERIPQAKVASARTSREMVKPGDSDAAYFRRLEEGGILLNSPQIAAV 61 N +++ P G + A ASA TS ++V P D DA YFR LE GI LN QI+AV Sbjct: 8 NNKIYYKRPYGVVNKNYTPAAHASADTSEQLVSPSDKDAFYFRALENQGIRLNQRQISAV 67 Query: 62 RHHQGPLLTLAGAGSGKTSVLICRTGYLLSVRGISPSQLLLLTFSNKAAAEMRERIALLP 121 RH GP+LTLAGAGSGKTSVL+CRTGY+LSVRGI P QLLL+TFS KAA EM+ RI+ LP Sbjct: 68 RHIDGPILTLAGAGSGKTSVLVCRTGYMLSVRGIPPQQLLLMTFSKKAADEMKLRISQLP 127 Query: 122 GVRESDAARLQARTFHSFFLYFLRRQGLQQEIFNETRRQHILLKQIMRELGLPKDAYPPE 181 + + A+R++ARTFHSF L LRR+G +Q I ET R+ I K+++RE L + Y PE Sbjct: 128 NIGQGAASRIEARTFHSFCLLMLRRRGYKQNILGETGRKQIYFKRLLRERNL-HETYQPE 186 Query: 182 TLLALLSTCKMNLGEPEKLPETSPAEKEMKAVLLLYEQWKTDNFKIDFDDVLLIAYRMLR 241 TL+ LLS+ KM + LPE S E+++K + YE+WK ID+DD+LL AY++L+ Sbjct: 187 TLITLLSSYKMQMIAVPDLPEKSEEERQLKLIFTSYEEWKRQLDLIDYDDMLLEAYQLLK 246 Query: 242 EKPALLLELQMRFLYVMVDEFQDTNALQYELVKMIAHPQHNLMVVGDDDQTIYSFNGARS 301 + LL LQ RF YVM+DEFQDTN +QYE++K++ P NLMVVGDDDQTIYSFNGAR+ Sbjct: 247 QDENLLAMLQNRFRYVMIDEFQDTNTIQYEIIKLLVQPHRNLMVVGDDDQTIYSFNGARN 306 Query: 302 EFILEFEKLYPGARVITLDINYRSGPAIVGLGNGIIRHNMRRRAKTLQAAQGSGRQPRYL 361 ++IL FEK +PGA+ I LD+NYRSG IVGLGN +IRHN +RR+KTL A+ G P Y Sbjct: 307 DYILNFEKQFPGAKNIILDVNYRSGSGIVGLGNAVIRHNKQRRSKTLLTAKPHGLPPVYA 366 Query: 362 RPQTADEEAEQIVEHILSEVASGARAYSDFALLYRASSSNRALLERLLLRDVPYVDYGEG 421 RP +D+EA+ IV +L + R++ DFA+L+R +SS+RA+ ++L++R VP++DYG G Sbjct: 367 RPGNSDDEADLIVNTLLQQKEKKGRSFRDFAILFRTASSSRAIFDQLVIRQVPFIDYGSG 426 Query: 422 QLLYEHWLISPVLDYLRLSLNRRNFAAMENILPTLYLNREKGMNHIRRMEAVQPKQGPLI 481 + LYE W+I PV+ +LRLS++RRNF AME +L T+Y+ ++ M I + Q K+ PLI Sbjct: 427 ESLYEQWVIKPVIAHLRLSIDRRNFDAMEAMLATMYVRPDQAMAFIWNEDKKQAKKWPLI 486 Query: 482 HLLSLPGMEDFKSGKXXXXXXXXXXXXXXTPVQAIRQIRSGFYDYFIEANERHQA-TLHR 540 HL P ++ F K P AIR++R FYD FIEAN+ A T H+ Sbjct: 487 HLTRFPEIKSFHQDKIKERIKLIRSLEKLKPEAAIRRLRIEFYDQFIEANKSGPALTEHK 546 Query: 541 EMLKEMLDELEASAERFDSLPGFLEFIGNVTERN-ELSRQPGLKEQGNRVALMTIHKSKG 599 + LKEMLDELEASA+RFD + FL FI + ++ E+ R + V MTIHKSKG Sbjct: 547 DSLKEMLDELEASAKRFDGITAFLAFIDEIAAKHEEMKRMKLDSSNADAVNFMTIHKSKG 606 Query: 600 LEFPVVFLIGASEGILPHSSALEGERLKDRKTSPPPGARDSKVIAGNTAGLAALEEERRL 659 LEFPVVF+ G SEGILPHSSA+ E+ DR S + AG+ G AA+EEERRL Sbjct: 607 LEFPVVFVCGVSEGILPHSSAITAEKNSDR----------SAIQAGDNVGEAAMEEERRL 656 Query: 660 AYVAVTRAREELFISSPARHRGKKAEVSRFML 691 AYVAVTRA EEL+ISSPA +RGK A VS F++ Sbjct: 657 AYVAVTRAEEELYISSPAYYRGKPAAVSSFII 688 >A6CLK8.1 A6CLK8_9BACI ATP-dependent DNA helicase, UvrD/REP family protein Length = 743 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/743 (47%), Positives = 476/743 (64%), Gaps = 31/743 (4%) Query: 6 FHNIPLGATGERIPQAKVASARTSREMVKPGDSDAAYFRRLEEGGILLNSPQIAAVRHHQ 65 F N P G + +P A+V + D YF+RLEE GI LN Q+ AVRH + Sbjct: 4 FSNRPFGISSSMMPNAEVYHNENHQHY---ESEDRFYFQRLEEKGICLNEAQMKAVRHME 60 Query: 66 GPLLTLAGAGSGKTSVLICRTGYLLSVRGISPSQLLLLTFSNKAAAEMRERIALLPGVRE 125 GP LTLAGAGSGKTSVL+ RTGYLL V+ + P +LLLTFS KAA EM++R+A LP + Sbjct: 61 GPCLTLAGAGSGKTSVLVSRTGYLLQVKHVPPENILLLTFSKKAAMEMKQRVASLPDINR 120 Query: 126 SDAARLQARTFHSFFLYFLRRQGLQQEIFNETRRQHILLKQIMRELGLPKDAYPPETLLA 185 + R+QA TFHSFFL+ LR +G+ QEI R +HI+LKQ+ R++G+ ++ Y PETLL+ Sbjct: 121 NAVNRIQAGTFHSFFLFLLRSRGVSQEILGNERFKHIVLKQLQRKIGI-QEPYQPETLLS 179 Query: 186 LLSTCKMNLGEPEKLPETSPAEKEMKAVLLLYEQWKTDNFKIDFDDVLLIAYRMLREKPA 245 LS KM + E LP+ + AEKE+K +LL++E+WK +N KIDFDD+L+ A MLR Sbjct: 180 TLSNLKMKMETVEDLPDKTTAEKEVKKILLMFEEWKENNQKIDFDDILVKACEMLRNDEK 239 Query: 246 LLLELQMRFLYVMVDEFQDTNALQYELVKMIAHPQHNLMVVGDDDQTIYSFNGARSEFIL 305 LL LQ RF Y+MVDEFQDTN LQYEL++MIA NL VVGDDDQTIYSFNGA + FIL Sbjct: 240 LLDALQKRFQYIMVDEFQDTNWLQYELIQMIARQSRNLFVVGDDDQTIYSFNGADNSFIL 299 Query: 306 EFEKLYPGARVITLDINYRSGPAIVGLGNGIIRHNMRRRAKTLQAAQGSGRQPRYLRPQT 365 +F+K YP A+VITLDINYRS IVGLGN +I N RR KTL+A + +P+Y RP Sbjct: 300 DFDKKYPDAKVITLDINYRSNSHIVGLGNQVISGNKYRRQKTLRAVKEEPVKPQYSRPSN 359 Query: 366 ADEEAEQIVEHILSEVASGARAYSDFALLYRASSSNRALLERLLLRDVPYVDYGEG-QLL 424 +DEEAE I+ I G Y D A+L+R SSS+RA+ ERL++ +VP+ Y G Q Sbjct: 360 SDEEAEWIISKIKEMTREGKLKYKDIAILHRTSSSSRAIFERLVIEEVPFFSYNLGDQHF 419 Query: 425 YEHWLISPVLDYLRLSLNRRNFAAMENILPTLYLNREKGMNHIRRMEAVQPKQGPLIHLL 484 Y+HW++ P++D+LRLSL RNF+A+E +LPTLY+NRE G+ I E K+ P+IHL Sbjct: 420 YDHWIVKPLIDHLRLSLVPRNFSAIEGVLPTLYINREAGVKFITIQEETARKKYPMIHLT 479 Query: 485 SLPGMEDFKSGKXXXXXXXXXXXXXXTPVQAIRQIRSGFYDYFIEANERHQATLHREMLK 544 + +++F+ K P A+++++ FYD +++ NER T H+E +K Sbjct: 480 DMHTLQEFQRNKVKERIKLIKSLSAEAPAAAVKRMKKEFYDSYLDTNERVSVTEHKENIK 539 Query: 545 EMLDELEASAERFDSLPGFLEFIGNVTERNELSRQPGLKEQGNRVALMTIHKSKGLEFPV 604 E L ELEASA+RF S+ F+ FI N+TE++E + + ++LMTIH+SKGLEFP Sbjct: 540 ETLAELEASADRFPSISAFIAFIDNMTEKHEKMQHQDKESFAEAISLMTIHRSKGLEFPA 599 Query: 605 VFLIGASEGILPHSSALEGERLKDRKTSPPPGARDSKVIAGNTAGLAALEEERRLAYVAV 664 VF+IGASEG LPHSSA+ ++L+D+ AR V+ A+EEERRL YVA+ Sbjct: 600 VFVIGASEGNLPHSSAVNADKLEDKIHHE---ARKKDVM--------AIEEERRLMYVAI 648 Query: 665 TRAREELFISSPARHRGKKAEVSRFMLXXXXXXXXXXXXXXTVNRIPAAVRHISASSSRG 724 TRA+ ELFISSPA ++G+K E+SRF+ + + P ++ Sbjct: 649 TRAKRELFISSPAYYQGEKREISRFL--TDAFREKLSKKETPLKKEPPKIK--------- 697 Query: 725 KTHTVPIWKCTGGSCPGWTRMKA 747 V W C+ C W+R+K Sbjct: 698 ----VAAWVCSSDQCIAWSRIKT 716 >A7GMB7.1 A7GMB7_BACCN UvrD/REP helicase Length = 684 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 304/683 (44%), Positives = 424/683 (62%), Gaps = 26/683 (3%) Query: 14 TGERIPQAKVASARTSREMVKPGDSDAAYFRRLEEGGILLNSPQIAAVRHHQGPLLTLAG 73 T +PQA +TS ++ D+DAAYFR LE+ G+ LN Q+ AVR +GP+LTLAG Sbjct: 12 THADVPQATYHIPKTSSHLIMEHDADAAYFRALEQQGVYLNEKQLEAVRATEGPVLTLAG 71 Query: 74 AGSGKTSVLICRTGYLLSVRGISPSQLLLLTFSNKAAAEMRERIALLPGVRESDAARLQA 133 AGSGKTSVL R GYL++V+ + P +LLLTF+ KAA E+R R+A LPG+ + ++ + A Sbjct: 72 AGSGKTSVLTTRVGYLVNVKKVHPRNILLLTFTQKAAEEIRSRVASLPGMNHAASSYVVA 131 Query: 134 RTFHSFFLYFLRRQGLQQEIFNETRRQHILLKQIMRELGLPKDAYPPETLLALLSTCKMN 193 TFHS FL LR QG Q+I + + I++K+I++EL L KDAY ET+LA++S K Sbjct: 132 GTFHSVFLKLLRSQGYNQQILANEKHKQIMIKKILKELRL-KDAYDAETMLAMISLEKNK 190 Query: 194 LGEPEKLPETSPAEKEMKAVLLLYEQWKTDNFKIDFDDVLLIAYRMLREKPALLLELQMR 253 L P+ + +P E+E + V YE+ K IDFDD+LL + ML LL++LQ R Sbjct: 191 LHRPKDVQAKTPVEQEFREVYERYEEVKQKYGYIDFDDILLETFYMLENNAPLLMQLQER 250 Query: 254 FLYVMVDEFQDTNALQYELVKMIAHPQHNLMVVGDDDQTIYSFNGARSEFILEFEKLYPG 313 F Y+ VDEFQDT+ QYE+VK++A PQ+NL + GDDDQ IY + GA + IL F K + Sbjct: 251 FQYIEVDEFQDTSYAQYEIVKLLAAPQNNLFIAGDDDQAIYGWRGASHQIILSFPKEFDD 310 Query: 314 ARVITLDINYRSGPAIVGLGNGIIRHNMRRRAKTLQAAQGSGRQPRYLRPQTADEEAEQI 373 +I L+ NYRS P IVGLGN +I+ N R K L + G +P Y RP T +EA QI Sbjct: 311 TTIIALNTNYRSNPFIVGLGNEVIKLNQERFHKELYSVHEEGMRPFYARPATTLDEANQI 370 Query: 374 VEHILSEVASGARAYSDFALLYRASSSNRALLERLLLRDVPYVDYGEGQLLYEHWLISPV 433 ++ I +V+SG R+Y DF LLYR S +R+LL++L + VP++ YG Q YEH LI PV Sbjct: 371 LQLIQDKVSSGERSYKDFCLLYRTHSVSRSLLDQLTIHKVPFIKYGASQSFYEHSLIKPV 430 Query: 434 LDYLRLSLNRRNFAAMENILPTLYLNREKGMNHIRRMEAVQPKQG---PLIHLLSL-PGM 489 LD+LRL+ A+ +ILPT+Y+ R+ ++ I R E + +G L+H L L P + Sbjct: 431 LDHLRLAYEPFQMEALASILPTMYIGRDDCLSFIER-EKWKYGEGRFPSLLHFLLLNPNL 489 Query: 490 EDFKSGKXXXXXXXXXXXXXXTPVQAIRQIRSGFYDY--FIEANERHQATLHREMLKEML 547 + F+ K P +A+++I G Y +++ N+R T+H+++ +EML Sbjct: 490 KSFQVKKLNDKIDFIKFIKELEPKKALKEIIKGKGKYLEYLQNNDRSSFTMHKDIQEEML 549 Query: 548 DELEASAERFDSLPGFLEFIGNVTERNELSRQPGLKEQGNRVALMTIHKSKGLEFPVVFL 607 +EL SA RF +P +LEF+ + + K Q + V+LM+IH +KGLEFP VFL Sbjct: 550 EELIESANRFTDIPAYLEFVHAAIQNQKEMEALKTKPQKDAVSLMSIHNAKGLEFPCVFL 609 Query: 608 IGASEGILPHSSALEGERLKDRKTSPPPGARDSKVIAGNTAGLAALEEERRLAYVAVTRA 667 +GAS+GILPHSS+ LKD P T ALEEERRL YVA+TRA Sbjct: 610 LGASDGILPHSSS-----LKDANDRP-------------TDSSEALEEERRLMYVAITRA 651 Query: 668 REELFISSPARHRGKKAEVSRFM 690 +EEL+ISSP RGKK ++SRF+ Sbjct: 652 KEELYISSPQFFRGKKLDISRFL 674 >C2UN36.1 C2UN36_BACCE ATP-dependent DNA helicase, UvrD/REP Length = 719 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 295/679 (43%), Positives = 430/679 (63%), Gaps = 18/679 (2%) Query: 18 IPQAKVASARTSREMVKPGDSDAAYFRRLEEGGILLNSPQIAAVRHHQGPLLTLAGAGSG 77 IPQA++A TS+E++ + D+ YFR LEE I LN QI AVR P+L +A AGSG Sbjct: 47 IPQAEIADIYTSKELIADDELDSFYFRALEEKNIFLNENQIEAVRTIDKPVLAIAAAGSG 106 Query: 78 KTSVLICRTGYLLSVRGISPSQLLLLTFSNKAAAEMRERIALLPGVRESDAARLQARTFH 137 KT VL R GYL+ V + S++L+LTF+ KAA EM++RIA LPG+ +S + A TFH Sbjct: 107 KTRVLASRVGYLMCVANVDASRILVLTFTRKAANEMKQRIAGLPGISKSVLNIIVAGTFH 166 Query: 138 SFFLYFLRRQGLQQEIFNETRRQHILLKQIMRELGLPKDAYPPETLLALLSTCKMNLGEP 197 S FL LR +G Q I + + +HI++K I+++ +DAY PET+L+L+S K P Sbjct: 167 SVFLRILRSRGYDQRILSNEKFKHIIIKNILKKYKY-QDAYDPETVLSLISYYKNTFVTP 225 Query: 198 EKLPETSPAEKEMKAVLLLYEQWKTDNFKIDFDDVLLIAYRMLREKPALLLELQMRFLYV 257 E LP +P EKE+K + YE+WK DN ++DFDD+LL Y++L E LL LQ +FL++ Sbjct: 226 ENLPVKTPIEKEIKTIYHSYEEWKADNNQMDFDDILLYTYQLLLEDYQLLELLQNKFLHI 285 Query: 258 MVDEFQDTNALQYELVKMIAHPQHNLMVVGDDDQTIYSFNGARSEFILEFEKLYPGARVI 317 +VDE+QD + LQ +VKM+A+PQ + VGDD QT+YSF G+ + IL+F YPGA+VI Sbjct: 286 LVDEYQDISLLQQMIVKMLAYPQKLIFGVGDDGQTVYSFRGSDPKLILDFPNEYPGAKVI 345 Query: 318 TLDINYRSGPAIVGLGNGIIRHNMRRRAKTLQAAQGSGRQPRYLRPQTADEEAEQIVEHI 377 L++NYRS P IVGLGN +I++N + K L+A + G +P Y P +DEEA IV+ I Sbjct: 346 KLEVNYRSNPYIVGLGNAVIKNNKVQFKKELRAFKADGPKPIYSSPADSDEEAINIVQSI 405 Query: 378 LSEVASGARAYSDFALLYRASSSNRALLERLLLRDVPYVDYGEGQLLYEHWLISPVLDYL 437 S + S R + D A+LYR + +RA++E+L+L D+PY+ YG YE+ + P++ +L Sbjct: 406 KSAIKSETRQFKDIAVLYRTHAVSRAIVEQLVLNDIPYIQYGNKDTFYENTYVRPIIGFL 465 Query: 438 RLSLNRRNFAAMENILPTLYLNREKGMNHIRR---MEAVQPKQGPLIHLL-SLPGMEDFK 493 RL+LN + A++ I LY+++EK ++HI R ++ + K PL++ L S+P ++ ++ Sbjct: 466 RLALNPTDEEAIKEICNVLYISKEKAISHINRASALDYIDGKVKPLLYYLTSIPELKKYQ 525 Query: 494 SGKXXXXXXXXXXXXXXTPVQAIRQIRSGF--YDYFIEANERHQATLHREMLKEMLDELE 551 P A+ +IR G+ Y+ +++ N+R T+H+E++KE+LDEL Sbjct: 526 LQFIIGVIKNLKGLARLNPDLAVEEIRHGYIGYEKYLQNNKRGSLTIHQELVKEVLDELT 585 Query: 552 ASAERFDSLPGFLEFIGNVTERNELSRQPGLKEQGNRVALMTIHKSKGLEFPVVFLIGAS 611 AS+++F + FL FI V RN+ + ++ + VAL TIH SKGLEFP VF IG S Sbjct: 586 ASSKKFKDIASFLNFIDKVILRNKQMEELQKQQNPDAVALHTIHSSKGLEFPTVFFIGVS 645 Query: 612 EGILPHSSALEGERLKDRKTSPPPGARDSKVIAGNTAGLAALEEERRLAYVAVTRAREEL 671 EG+LPH SALE ++DR T+ + +LEEERRLAYV +TRA EL Sbjct: 646 EGVLPHKSALEV--MEDRITNKKEMLMKLQ---------ESLEEERRLAYVGITRAESEL 694 Query: 672 FISSPARHRGKKAEVSRFM 690 FISSP R + E+SRF+ Sbjct: 695 FISSPKVVRNQSCEISRFI 713 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,249,285,041 Number of extensions: 171731521 Number of successful extensions: 443693 Number of sequences better than 1.0e-05: 3927 Number of HSP's gapped: 435629 Number of HSP's successfully gapped: 5870 Length of query: 775 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 631 Effective length of database: 1,704,070,043 Effective search space: 1075268197133 Effective search space used: 1075268197133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)